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snpEff download hg19 when needed. #1

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ahmetsacan opened this issue Sep 26, 2024 · 0 comments

ahmetsacan commented Sep 26, 2024

Azurify/azurify.py

Line 46 in c35262b

    
           snpeff_command = f"java -jar {snpeff_jar_path} -canon hg19 {input_file} > {output_file}"

Automated download of hg19 here. e.g.,:
If hg19 file is not present:
run snpEff to download it.

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