From 5de8f1fac65c1032ef855b8dc021454d6ec82744 Mon Sep 17 00:00:00 2001 From: Natalia Garcia Date: Fri, 22 Mar 2024 09:37:34 +0000 Subject: [PATCH] bump version --- CHANGELOG.md | 2 +- bin/workflow_glue/check_sample_sheet.py | 2 +- nextflow.config | 4 ++-- 3 files changed, 4 insertions(+), 4 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 11c97b0..815e80c 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -5,7 +5,7 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.1.0/), and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). -## [Unreleased] +## [v2.9.3] ### Fixed - Files that are empty following the fastcat filtering are discarded from downstream analyses. diff --git a/bin/workflow_glue/check_sample_sheet.py b/bin/workflow_glue/check_sample_sheet.py index cd565df..7fa1605 100755 --- a/bin/workflow_glue/check_sample_sheet.py +++ b/bin/workflow_glue/check_sample_sheet.py @@ -51,7 +51,7 @@ def main(args): with open(args.sample_sheet, "r", encoding=encoding) as f: try: # Excel files don't throw any error until here - csv.Sniffer().sniff(f.read(100)) + csv.Sniffer().sniff(f.readline()) f.seek(0) # return to initial position again except Exception as e: # Excel fails with UniCode error diff --git a/nextflow.config b/nextflow.config index 18a81eb..edeef34 100644 --- a/nextflow.config +++ b/nextflow.config @@ -120,7 +120,7 @@ params { ] agent = null container_sha = "sha44a6dacff5f2001d917b774647bb4cbc1b53bc76" - common_sha = "sha362c808b4f22ce66f940bef192a1316aec5f4c75" + common_sha = "sha645176f98b8780851f9c476a064d44c2ae76ddf6" container_sha_amr = "sha2c763f19fac46035437854f1e2a5f05553542a78" } } @@ -133,7 +133,7 @@ manifest { description = 'Identification of the origin of single reads from both amplicon-targeted and shotgun metagenomics sequencing.' mainScript = 'main.nf' nextflowVersion = '>=23.04.2' - version = 'v2.9.2' + version = 'v2.9.3' }