v0.6.1

Fixed

• ChEBI codes not cast correctly in Python API.

Added

• Support ambiguous modified bases as listed in HTS tags specification.

v0.6.0

Changed

• Sites with no coverage now report "nan" methylation frequency and score.

Added

• Option --aggregate to pair information from two strands and output additional files.
• Support for ChEBI codes in C and Python pileup API.

v0.5.3

Added

• Python 3.9 and 3.10 wheel builds.

v0.5.2

Changed

• Use commit e51f72f of htslib for ? and . parsing of Mm tag.

v0.5.1

Added

• --max_depth argument, and do not limit by default.
• --chh and --chg filter options.

v0.5.0

Changed

• Decouple file opening from read iteration.
• Move Python pileup function to method of ModBam class.

v0.4.6

Changed

• Reworked compilation to remove argparser from Python module.

Fixed

• Memory leak in modbampy.

v0.4.5

Fixed

• Unmasking of reference sites (again).

Added

• Option --mask/-k to respect reference soft-masking.

v0.4.4

Fixed

• Logic error in filtering CpG sites for masked bases.

v0.4.3

Changed

• Update modbampy version to match C code.