conf.py

# -*- coding: utf-8 -*-
#
# training_modules documentation build configuration file, created by
# sphinx-quickstart on Fri Jan 27 16:40:00 2017.
#
# This file is execfile()d with the current directory set to its
# containing dir.
#
# Note that not all possible configuration values are present in this
# autogenerated file.
#
# All configuration values have a default; values that are commented out
# serve to show the default.

# If extensions (or modules to document with autodoc) are in another directory,
# add these directories to sys.path here. If the directory is relative to the
# documentation root, use os.path.abspath to make it absolute, like shown here.
#
# import os
# import sys
# sys.path.insert(0, os.path.abspath('.'))


# -- General configuration ------------------------------------------------

# If your documentation needs a minimal Sphinx version, state it here.
#
# needs_sphinx = '1.0'

# Add any Sphinx extension module names here, as strings. They can be
# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
# ones.
extensions = ['sphinx_tabs.tabs', 'myst_parser']

myst_enable_extensions = ["colon_fence"]

# Add any paths that contain templates here, relative to this directory.
templates_path = ['_templates']

# The suffix(es) of source filenames.
# You can specify multiple suffix as a list of string:
#
# source_suffix = ['.rst', '.md']
#source_suffix = '.rst'

# The master toctree document.
master_doc = 'index'

# General information about the project.
project = u'ENA Browser Documentation'
copyright = u'2017-2022, European Nucleotide Archive (ENA). Licensed under the Apache License 2.0.'
author = u'The European Nucleotide Archive (ENA) team.'

# The version info for the project you're documenting, acts as replacement for
# |version| and |release|, also used in various other places throughout the
# built documents.
#
# The short X.Y version.
version = u'1'
# The full version, including alpha/beta/rc tags.
release = u'1'

# The language for content autogenerated by Sphinx. Refer to documentation
# for a list of supported languages.
#
# This is also used if you do content translation via gettext catalogs.
# Usually you set "language" from the command line for these cases.
# language = None

# List of patterns, relative to source directory, that match files and
# directories to ignore when looking for source files.
# This patterns also effect to html_static_path and html_extra_path
exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store']

# The name of the Pygments (syntax highlighting) style to use.
pygments_style = 'sphinx'

# If true, `todo` and `todoList` produce output, else they produce nothing.
todo_include_todos = False


# -- Options for HTML output ----------------------------------------------

# The theme to use for HTML and HTML Help pages.  See the documentation for
# a list of builtin themes.
#
# html_theme = 'alabaster'
# Jasmine addition: please note that the theme is now specified in the requirements file as sphinx_rtd_theme
# Jasmine addition: please note that any docs breaking could be due to a required package changing
# Jasmine addition: it is reccommended to pin requirments - see https://docs.readthedocs.io/en/stable/guides/rep>
html_theme = "sphinx_rtd_theme"

# marc addition: from http://stackoverflow.com/questions/18969093/how-to-include-the-toctree-in-the-sidebar-of-each-page
# remove if causing issues. forces globaltoc.html
#html_sidebars = { '**': ['globaltoc.html', 'relations.html', 'sourcelink.html', 'searchbox.html'], }
# and with localtoc (although this might be default)
#html_sidebars = { '**': ['localtoc.html', 'relations.html', 'sourcelink.html', 'searchbox.html'], }
#trial, this one has globaltoc.html AND localtoc.html
html_sidebars = { '**': ['globaltoc.html','localtoc.html', 'relations.html', 'sourcelink.html', 'searchbox.html'], }


# Theme options are theme-specific and customize the look and feel of a theme
# further.  For a list of options available for each theme, see the
# documentation.
#
# html_theme_options = {}

# Add any paths that contain custom static files (such as style sheets) here,
# relative to this directory. They are copied after the builtin static files,
# so a file named "default.css" will overwrite the builtin "default.css".
html_static_path = ['_static']

html_logo = 'ENA_Logo_tagline_white.png'


# -- Options for HTMLHelp output ------------------------------------------

# Output file base name for HTML help builder.
htmlhelp_basename = 'training_modulesdoc'


# -- Options for LaTeX output ---------------------------------------------

latex_elements = {
    # The paper size ('letterpaper' or 'a4paper').
    #
    # 'papersize': 'letterpaper',

    # The font size ('10pt', '11pt' or '12pt').
    #
    # 'pointsize': '10pt',

    # Additional stuff for the LaTeX preamble.
    #
    # 'preamble': '',

    # Latex figure (float) alignment
    #
    # 'figure_align': 'htbp',
}

# Grouping the document tree into LaTeX files. List of tuples
# (source start file, target name, title,
#  author, documentclass [howto, manual, or own class]).
latex_documents = [
    (master_doc, 'training_modules.tex', u'training\\_modules Documentation',
     u'Marc B Rossello', 'manual'),
]


# -- Options for manual page output ---------------------------------------

# One entry per manual page. List of tuples
# (source start file, name, description, authors, manual section).
man_pages = [
    (master_doc, 'training_modules', u'training_modules Documentation',
     [author], 1)
]


# -- Options for Texinfo output -------------------------------------------

# Grouping the document tree into Texinfo files. List of tuples
# (source start file, target name, title, author,
#  dir menu entry, description, category)
texinfo_documents = [
    (master_doc, 'training_modules', u'training_modules Documentation',
     author, 'training_modules', 'One line description of project.',
     'Miscellaneous'),
]

# Jasmine addition: test use recommonmarkparser to parse .md files, remove if causing issues
#from recommonmark.parser import CommonMarkParser
#  
#source_parsers = {
#    '.md': CommonMarkParser,
#}

source_suffix = {
    '.rst': 'restructuredtext',
    '.txt': 'markdown',
    '.md': 'markdown',
}