diff --git a/logs/completed_preprocessing.tsv b/logs/completed_preprocessing.tsv index e99ae2e..c339cbd 100644 --- a/logs/completed_preprocessing.tsv +++ b/logs/completed_preprocessing.tsv @@ -1,47 +1,47 @@ subjID wme_mask intersect_ses-S1_task-study intersect_ses-S2_task-test intersect_ses-S2_task-rest scaled_ses-S1_1 scaled_ses-S1_2 scaled_ses-S2_1 scaled_ses-S2_2 scaled_ses-S2_3 scaled_resting decon_ses-S1_1 decon_ses-S2_1 decon_resting ashs_L ashs_R reface -sub-4001 2022-03-18 21:16:41 2022-03-18 21:16:41 2022-03-01 18:21:15 2022-03-15 13:24:42 2022-03-18 21:16:42 2022-03-18 21:16:47 2022-03-01 18:21:17 2022-03-01 18:21:18 2022-03-01 18:21:20 2022-03-15 13:24:45 2022-03-18 21:16:44 2022-03-01 18:21:21 2022-03-15 13:24:48 2021-12-20 09:18:00 2021-12-20 09:18:00 2021-11-22 11:12:05 -sub-4002 2022-03-01 18:22:56 2022-03-21 19:23:57 2022-03-01 18:22:56 2022-03-21 19:23:59 2022-03-21 19:24:05 2022-03-01 18:22:59 2022-03-01 18:23:05 2022-03-01 18:22:57 2022-03-01 18:22:59 2021-12-20 09:17:57 2021-12-20 09:17:57 2021-11-22 11:12:10 -sub-4005 2022-03-01 18:21:45 2022-03-21 18:31:10 2022-03-01 18:21:45 2022-03-21 18:31:15 2022-03-21 18:31:17 2022-03-01 18:21:48 2022-03-01 18:21:47 2022-03-01 18:21:54 2022-03-01 18:21:49 2021-12-20 09:17:58 2021-12-20 09:17:58 2021-11-22 11:12:27 -sub-4008 2022-03-01 18:13:08 2022-03-21 19:24:02 2022-03-01 18:13:08 2022-03-21 19:24:11 2022-03-21 19:24:10 2022-03-01 18:13:09 2022-03-01 18:13:12 2022-03-01 18:13:11 2022-03-01 18:13:12 2021-12-20 09:17:57 2021-12-20 09:17:57 2021-11-22 11:12:28 -sub-4009 2022-03-01 18:23:59 2022-03-21 18:20:06 2022-03-01 18:23:59 2022-03-21 18:20:13 2022-03-21 18:20:12 2022-03-01 18:24:09 2022-03-01 18:24:01 2022-03-01 18:24:02 2022-03-01 18:24:03 2021-12-20 09:17:58 2021-12-20 09:17:58 2021-11-22 11:12:11 -sub-4011 2021-12-20 09:18:20 2021-12-20 09:18:20 2021-11-22 11:12:23 -sub-4012 2022-03-01 17:43:59 2022-03-21 19:28:24 2022-03-01 17:44:00 2022-03-21 19:28:33 2022-03-21 19:28:26 2022-03-01 17:44:06 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2022-03-25 11:11:29 2022-03-02 20:52:46 2022-03-25 11:11:40 2022-03-25 11:11:38 2022-03-02 20:52:55 2022-03-02 20:52:48 2022-03-02 20:52:50 2022-03-02 20:52:50 2021-11-29 13:56:05 -sub-4062 2022-03-02 23:24:29 2022-03-25 10:31:56 2022-03-02 23:24:30 2022-03-25 10:31:59 2022-03-25 10:32:08 2022-03-02 23:24:33 2022-03-02 23:24:34 2022-03-02 23:24:36 2022-03-02 23:24:36 2021-12-20 09:18:00 2021-12-20 09:17:59 2021-11-29 13:56:10 -sub-4063 2022-03-25 11:00:17 2022-03-25 11:00:17 2022-03-25 11:00:28 2022-03-25 11:00:26 2021-12-20 09:18:00 2021-12-20 09:18:00 2021-11-29 13:55:53 -sub-4064 2022-03-02 22:12:23 2022-03-25 11:31:21 2022-03-02 22:12:23 2022-03-25 11:31:30 2022-03-25 11:31:31 2022-03-02 22:12:32 2022-03-02 22:12:25 2022-03-02 22:12:33 2022-03-02 22:12:26 2021-12-20 09:18:18 2021-12-20 09:18:18 2021-11-29 13:56:17 -sub-4065 2022-03-03 00:03:40 2022-03-25 11:14:15 2022-03-03 00:03:40 2022-03-25 11:14:26 2022-03-25 11:14:24 2022-03-03 00:03:43 2022-03-03 00:03:50 2022-03-03 00:03:42 2022-03-03 00:03:43 2021-11-29 13:56:32 -sub-4066 2022-03-02 23:50:04 2022-03-25 10:58:07 2022-03-02 23:50:04 2022-03-25 10:58:17 2022-03-25 10:58:19 2022-03-02 23:50:07 2022-03-02 23:50:06 2022-03-02 23:50:09 2022-03-02 23:50:09 2021-12-20 09:17:58 2021-12-20 09:17:58 2021-11-29 13:56:23 -sub-4067 2022-03-02 23:25:45 2022-03-25 10:36:25 2022-03-02 23:25:45 2022-03-25 10:36:28 2022-03-25 10:36:30 2022-03-02 23:25:49 2022-03-02 23:25:47 2022-03-02 23:25:57 2022-03-02 23:25:50 2021-11-29 13:56:24 -sub-4070 2022-03-03 13:23:20 2022-03-25 10:53:26 2022-03-03 13:23:20 2022-03-25 10:53:36 2022-03-25 10:53:38 2022-03-03 13:23:23 2022-03-03 13:23:30 2022-03-03 13:23:21 2022-03-03 13:23:24 2021-12-20 09:18:20 2021-12-20 09:18:20 2021-11-29 14:06:20 -sub-4077 2022-03-03 13:15:27 2022-03-25 10:56:57 2022-03-03 13:15:27 2022-03-25 10:57:01 2022-03-25 10:57:09 2022-03-03 13:15:28 2022-03-03 13:15:29 2022-03-03 13:15:32 2022-03-03 13:15:32 2021-12-20 09:18:20 2021-12-20 09:18:20 2021-11-29 14:06:11 -sub-4080 2022-03-03 14:24:40 2022-03-25 10:27:25 2022-03-03 14:24:40 2022-03-25 10:27:41 2022-03-25 10:27:39 2022-03-03 14:24:44 2022-03-03 14:24:45 2022-03-03 14:24:42 2022-03-03 14:24:45 2021-12-20 09:18:00 2021-12-20 09:18:00 2021-11-29 14:06:10 -sub-4081 2022-03-03 13:06:31 2022-03-25 10:52:27 2022-03-03 13:06:31 2022-03-25 10:52:39 2022-03-25 10:52:37 2022-03-03 13:06:35 2022-03-03 13:06:44 2022-03-03 13:06:34 2022-03-03 13:06:36 2021-12-20 09:17:59 2021-12-20 09:17:59 2021-11-29 14:06:13 +sub-4057 2022-03-02 22:20:21 2022-03-02 22:20:21 2022-03-02 22:20:22 2022-03-02 22:20:30 2022-03-02 22:20:28 2022-03-02 22:20:23 2021-12-20 09:17:59 2021-12-20 09:17:59 2021-11-29 13:56:36 +sub-4059 2022-03-02 20:52:46 2022-03-02 20:52:46 2022-03-02 20:52:55 2022-03-02 20:52:48 2022-03-02 20:52:50 2022-03-02 20:52:50 2021-11-29 13:56:05 +sub-4062 2022-03-02 23:24:29 2022-03-02 23:24:30 2022-03-02 23:24:33 2022-03-02 23:24:34 2022-03-02 23:24:36 2022-03-02 23:24:36 2021-12-20 09:18:00 2021-12-20 09:17:59 2021-11-29 13:56:10 +sub-4063 2021-12-20 09:18:00 2021-12-20 09:18:00 2021-11-29 13:55:53 +sub-4064 2022-03-02 22:12:23 2022-03-02 22:12:23 2022-03-02 22:12:32 2022-03-02 22:12:25 2022-03-02 22:12:33 2022-03-02 22:12:26 2021-12-20 09:18:18 2021-12-20 09:18:18 2021-11-29 13:56:17 +sub-4065 2022-03-03 00:03:40 2022-03-03 00:03:40 2022-03-03 00:03:43 2022-03-03 00:03:50 2022-03-03 00:03:42 2022-03-03 00:03:43 2021-11-29 13:56:32 +sub-4066 2022-03-02 23:50:04 2022-03-02 23:50:04 2022-03-02 23:50:07 2022-03-02 23:50:06 2022-03-02 23:50:09 2022-03-02 23:50:09 2021-12-20 09:17:58 2021-12-20 09:17:58 2021-11-29 13:56:23 +sub-4067 2022-03-02 23:25:45 2022-03-02 23:25:45 2022-03-02 23:25:49 2022-03-02 23:25:47 2022-03-02 23:25:57 2022-03-02 23:25:50 2021-11-29 13:56:24 +sub-4070 2022-03-03 13:23:20 2022-03-03 13:23:20 2022-03-03 13:23:23 2022-03-03 13:23:30 2022-03-03 13:23:21 2022-03-03 13:23:24 2021-12-20 09:18:20 2021-12-20 09:18:20 2021-11-29 14:06:20 +sub-4077 2022-03-03 13:15:27 2022-03-03 13:15:27 2022-03-03 13:15:28 2022-03-03 13:15:29 2022-03-03 13:15:32 2022-03-03 13:15:32 2021-12-20 09:18:20 2021-12-20 09:18:20 2021-11-29 14:06:11 +sub-4080 2022-03-03 14:24:40 2022-03-03 14:24:40 2022-03-03 14:24:44 2022-03-03 14:24:45 2022-03-03 14:24:42 2022-03-03 14:24:45 2021-12-20 09:18:00 2021-12-20 09:18:00 2021-11-29 14:06:10 +sub-4081 2022-03-03 13:06:31 2022-03-03 13:06:31 2022-03-03 13:06:35 2022-03-03 13:06:44 2022-03-03 13:06:34 2022-03-03 13:06:36 2021-12-20 09:17:59 2021-12-20 09:17:59 2021-11-29 14:06:13 sub-4082 2022-03-03 11:56:29 2022-03-03 11:56:30 2022-03-03 11:56:44 2022-03-03 11:56:36 2022-03-03 11:56:34 2022-03-03 11:56:37 2021-12-20 09:18:17 2021-12-20 09:18:17 2021-11-29 14:06:18 sub-4083 2022-03-03 13:16:37 2022-03-03 13:16:37 2022-03-03 13:16:42 2022-03-03 13:16:41 2022-03-03 13:16:39 2022-03-03 13:16:42 2021-11-29 14:06:15 sub-4084 2022-03-03 13:37:55 2022-03-03 13:37:55 2022-03-03 13:37:58 2022-03-03 13:38:06 2022-03-03 13:38:04 2022-03-03 13:37:58 2021-12-20 09:18:20 2021-12-20 09:18:20 2021-11-29 14:06:26 @@ -49,7 +49,7 @@ sub-4085 2022-03-03 14:44:00 2022-03-03 14:44:00 2022-03-03 14:44:10 2022-03 sub-4086 2022-03-03 19:47:06 2022-03-03 19:47:06 2022-03-03 19:47:10 2022-03-03 19:47:09 2022-03-03 19:47:07 2022-03-03 19:47:11 2021-12-20 09:18:19 2021-12-20 09:18:19 2021-11-29 14:16:16 sub-4088 2022-03-03 18:57:37 2022-03-03 18:57:37 2022-03-03 18:57:40 2022-03-03 18:57:47 2022-03-03 18:57:39 2022-03-03 18:57:41 2021-12-20 09:17:58 2021-12-20 09:17:58 2021-11-29 14:16:22 sub-4090 2021-11-29 14:15:58 -sub-4091 2022-03-03 19:43:07 2022-03-03 19:43:07 2022-03-03 19:43:17 2022-03-03 19:43:09 2022-03-03 19:43:11 2022-03-03 19:43:11 2021-12-20 09:17:57 2021-12-20 09:17:57 2021-11-29 14:16:06 +sub-4091 2022-03-24 10:45:48 2022-03-24 10:45:49 2022-03-24 10:47:37 2022-03-24 10:49:05 2022-03-24 10:56:29 2022-03-24 10:55:11 2021-12-20 09:17:57 2021-12-20 09:17:57 2021-11-29 14:16:06 sub-4096 2022-03-03 20:30:29 2022-03-03 20:30:29 2022-03-03 20:30:34 2022-03-03 20:30:31 2022-03-03 20:30:35 2022-03-03 20:30:35 2021-12-20 09:17:59 2021-12-20 09:17:59 2021-11-29 14:16:10 sub-4097 2022-03-03 18:52:52 2022-03-03 18:52:52 2022-03-03 18:53:03 2022-03-03 18:52:53 2022-03-03 18:52:55 2022-03-03 18:52:56 2021-12-20 09:18:19 2021-12-20 09:18:19 2021-11-29 14:16:36 sub-4101 2022-03-03 19:33:37 2022-03-03 19:33:37 2022-03-03 19:33:41 2022-03-03 19:33:42 2022-03-03 19:33:39 2022-03-03 19:33:42 2021-12-20 09:18:17 2021-12-20 09:18:17 2021-11-29 14:16:37 @@ -63,7 +63,7 @@ sub-4110 2022-03-03 19:03:38 2022-03-03 19:03:38 2022-03-03 19:03:41 2022-03 sub-4111 2022-03-03 18:15:25 2022-03-03 18:15:25 2022-03-03 18:15:27 2022-03-03 18:15:29 2022-03-03 18:15:30 2022-03-03 18:15:30 2021-12-20 09:17:57 2021-12-20 09:17:57 2021-11-29 14:29:16 sub-4114 2022-03-03 20:32:18 2022-03-03 20:32:18 2022-03-03 20:32:23 2022-03-03 20:32:20 2022-03-03 20:32:22 2022-03-03 20:32:23 2021-12-20 09:17:57 2021-12-20 09:17:58 2021-11-29 14:29:23 sub-4115 2022-03-04 13:29:31 2022-03-04 13:29:31 2022-03-04 13:29:40 2022-03-04 13:29:33 2022-03-04 13:29:34 2022-03-04 13:29:34 2021-12-20 09:18:18 2021-12-20 09:18:18 2021-11-29 14:36:35 -sub-4116 2022-03-04 13:43:51 2022-03-04 13:43:51 2022-03-04 13:43:53 2022-03-04 13:44:00 2022-03-04 13:43:54 2022-03-04 13:43:54 2021-12-20 09:17:57 2021-12-20 09:17:57 2021-11-29 14:37:03 +sub-4116 2022-03-24 11:49:29 2022-03-24 11:49:29 2022-03-24 12:00:34 2022-03-24 11:51:13 2022-03-24 11:52:32 2022-03-24 11:59:09 2021-12-20 09:17:57 2021-12-20 09:17:57 2021-11-29 14:37:03 sub-4117 2022-03-04 11:54:35 2022-03-04 11:54:35 2022-03-04 11:54:38 2022-03-04 11:54:40 2022-03-04 11:54:36 2022-03-04 11:54:40 2021-12-20 09:18:18 2021-12-20 09:18:18 2021-11-29 14:37:13 sub-4118 2022-03-04 12:50:45 2022-03-04 12:50:45 2022-03-04 12:50:54 2022-03-04 12:50:55 2022-03-04 12:50:46 2022-03-04 12:50:48 2021-12-20 09:18:00 2021-12-20 09:18:00 2021-11-29 14:37:23 sub-4119 2022-03-04 12:51:59 2022-03-04 12:51:59 2022-03-04 12:52:02 2022-03-04 12:52:04 2022-03-04 12:52:00 2022-03-04 12:52:04 2021-12-20 09:17:59 2021-12-20 09:17:59 2021-11-29 14:37:02 @@ -80,7 +80,7 @@ sub-4132 2022-03-04 17:37:11 2022-03-04 17:37:11 2022-03-04 17:37:14 2022-03 sub-4134 2022-03-04 18:44:25 2022-03-04 18:44:25 2022-03-04 18:44:35 2022-03-04 18:44:27 2022-03-04 18:44:29 2022-03-04 18:44:29 2021-12-20 09:17:59 2021-12-20 09:17:58 2021-11-29 14:47:21 sub-4138 2022-03-05 11:12:06 2022-03-05 11:12:06 2022-03-05 11:12:18 2022-03-05 11:12:17 2022-03-05 11:12:09 2022-03-05 11:12:09 2021-12-20 09:18:19 2021-12-20 09:18:19 2021-11-29 14:56:33 sub-4140 2022-03-05 10:48:33 2022-03-05 10:48:33 2022-03-05 10:48:35 2022-03-05 10:48:39 2022-03-05 10:48:36 2022-03-05 10:48:39 2021-12-20 09:18:00 2021-12-20 09:18:00 2021-11-29 14:57:02 -sub-4142 2022-03-05 11:44:43 2022-03-05 11:44:43 2022-03-05 11:44:45 2022-03-05 11:44:47 2022-03-05 11:44:53 2022-03-05 11:44:47 2021-12-20 09:17:57 2021-12-20 09:17:57 2021-11-29 14:57:15 +sub-4142 2022-03-24 11:21:30 2022-03-24 11:21:29 2022-03-24 11:23:48 2022-03-24 11:25:09 2022-03-24 11:32:25 2022-03-24 11:32:26 2021-12-20 09:17:57 2021-12-20 09:17:57 2021-11-29 14:57:15 sub-4143 2022-03-05 11:58:38 2022-03-05 11:58:38 2022-03-05 11:58:42 2022-03-05 11:58:39 2022-03-05 11:58:43 2022-03-05 11:58:43 2021-12-20 09:18:19 2021-12-20 09:18:19 2021-11-29 14:57:18 sub-4144 2022-03-05 11:46:19 2022-03-05 11:46:19 2022-03-05 11:46:25 2022-03-05 11:46:23 2022-03-05 11:46:20 2022-03-05 11:46:25 2021-12-20 09:18:17 2021-12-20 09:18:17 2021-11-29 14:57:21 sub-4146 2022-03-05 12:11:21 2022-03-05 12:11:21 2022-03-05 12:11:26 2022-03-05 12:11:23 2022-03-05 12:11:25 2022-03-05 12:11:26 2021-12-20 09:18:18 2021-12-20 09:18:18 2021-11-29 14:57:17 @@ -102,7 +102,7 @@ sub-4174 2022-03-05 10:10:13 2022-03-05 10:10:13 2022-03-05 10:10:17 2022-03 sub-4175 2022-03-05 09:03:06 2022-03-05 09:03:06 2022-03-05 09:03:10 2022-03-05 09:03:09 2022-03-05 09:03:07 2022-03-05 09:03:10 2021-12-20 09:18:21 2021-12-20 09:18:21 2021-11-29 15:17:15 sub-4177 2022-03-05 09:36:02 2022-03-05 09:36:02 2022-03-05 09:36:11 2022-03-05 09:36:04 2022-03-05 09:36:05 2022-03-05 09:36:06 2021-12-20 09:18:20 2021-12-20 09:18:20 2021-11-29 15:17:08 sub-4184 2022-03-05 10:25:36 2022-03-05 10:25:36 2022-03-05 10:25:38 2022-03-05 10:25:44 2022-03-05 10:25:39 2022-03-05 10:25:39 2021-12-20 09:18:00 2021-12-20 09:18:00 2021-11-29 15:17:30 -sub-4186 2022-03-05 10:15:07 2022-03-05 10:15:07 2022-03-05 10:15:08 2022-03-05 10:15:11 2022-03-05 10:15:10 2022-03-05 10:15:11 2021-12-20 09:17:57 2021-12-20 09:17:57 2021-11-29 15:27:28 +sub-4186 2022-03-24 11:41:10 2022-03-24 11:41:09 2022-03-24 11:42:24 2022-03-24 11:43:20 2022-03-24 11:49:25 2022-03-24 11:49:25 2021-12-20 09:17:57 2021-12-20 09:17:57 2021-11-29 15:27:28 sub-4188 2022-03-06 00:09:01 2022-03-06 00:09:01 2022-03-06 00:09:02 2022-03-06 00:09:10 2022-03-06 00:09:04 2022-03-06 00:09:04 2021-12-20 09:18:00 2021-12-20 09:18:00 2021-11-29 15:27:33 sub-4189 2022-03-06 00:25:11 2022-03-06 00:25:11 2022-03-06 00:25:20 2022-03-06 00:25:15 2022-03-06 00:25:14 2022-03-06 00:25:15 2021-12-20 09:18:17 2021-12-20 09:18:17 2021-11-29 15:27:29 sub-4190 2022-03-05 23:56:20 2022-03-05 23:56:20 2022-03-05 23:56:22 2022-03-05 23:56:28 2022-03-05 23:56:23 2022-03-05 23:56:23 2021-12-20 09:17:58 2021-12-20 09:17:58 2021-11-29 15:27:40 @@ -117,14 +117,14 @@ sub-4203 2022-03-07 12:24:54 2022-03-07 12:24:54 2022-03-07 12:24:56 2022-03 sub-4206 2022-03-07 13:03:48 2022-03-07 13:03:48 2022-03-07 13:03:49 2022-03-07 13:03:50 2022-03-07 13:03:52 2022-03-07 13:03:52 2022-03-07 10:43:51 2022-03-07 10:43:51 2022-02-11 17:29:30 sub-4207 2022-03-07 13:13:22 2022-03-07 13:13:22 2022-03-07 13:13:23 2022-03-07 13:13:25 2022-03-07 13:13:24 2022-03-07 13:13:25 2022-03-07 10:43:54 2022-03-07 10:43:54 2022-02-28 13:44:52 sub-4209 2022-03-07 13:21:57 2022-03-07 13:21:57 2022-03-07 13:22:00 2022-03-07 13:22:07 2022-03-07 13:22:06 2022-03-07 13:22:00 2022-03-07 10:43:56 2022-03-07 10:43:56 2022-02-11 17:29:31 -sub-4210 2022-03-07 12:14:18 2022-03-07 12:14:13 2022-03-07 12:14:30 2022-03-07 12:14:22 2022-03-07 12:14:24 2022-03-07 12:14:25 2022-03-07 10:44:00 2022-03-07 10:44:00 2022-02-28 13:44:45 +sub-4210 2022-03-24 11:32:32 2022-03-24 11:32:32 2022-03-24 11:41:06 2022-03-24 11:33:48 2022-03-24 11:40:06 2022-03-24 11:39:06 2022-03-07 10:44:00 2022-03-07 10:44:00 2022-02-28 13:44:45 sub-4212 2022-03-07 13:00:06 2022-03-07 13:00:06 2022-03-07 13:00:09 2022-03-07 13:00:08 2022-03-07 13:00:15 2022-03-07 13:00:09 2022-03-07 10:40:51 2022-03-07 10:40:51 2022-02-11 17:29:27 sub-4215 2022-03-25 09:12:51 2022-03-25 09:12:51 2022-02-28 13:45:00 sub-4216 2022-03-25 09:13:25 2022-03-25 09:13:25 2022-02-28 13:45:07 sub-4217 2022-03-25 09:13:30 2022-03-25 09:13:30 2022-02-28 13:45:14 -sub-4219 2022-04-07 12:02:19 2022-04-07 12:02:19 2022-03-17 13:34:57 +sub-4219 2022-03-17 13:34:57 sub-4220 2022-04-07 12:01:18 2022-04-07 12:01:18 2022-03-25 09:01:20 sub-4221 2022-03-07 10:03:47 sub-4222 2022-03-17 13:35:12 -sub-4223 -sub-4229 +sub-4223 2022-04-07 11:37:50 +sub-4229 2022-04-07 11:43:37 diff --git a/requirements.txt b/requirements.txt index 55d2729..c85ba10 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,3 +1,4 @@ GitPython==3.1.27 pandas==1.2.1 requests==2.23.0 +setuptools==47.1.1.post20200604 diff --git a/resources/afni/masks.py b/resources/afni/masks.py index 4fdce37..6052057 100644 --- a/resources/afni/masks.py +++ b/resources/afni/masks.py @@ -1,7 +1,5 @@ """Functions for making various masks.""" import os - -from hamcrest import starts_with from . import submit @@ -194,10 +192,8 @@ def make_tissue_masks(work_dir, subj_num, afni_data, thresh=0.5): # make eroded, binary tissue masks for tiss in tiss_list: - # determine tissue type, mask name + # determine tissue type, mask name, skip GM masks tiss_type = tiss.split("label-")[1].split("_")[0] - - # made cool change HEREEEE if tiss_type == "GM": continue diff --git a/resources/reports/check_complete.py b/resources/reports/check_complete.py index 1bc3760..b959df4 100644 --- a/resources/reports/check_complete.py +++ b/resources/reports/check_complete.py @@ -30,7 +30,7 @@ def clone_guid(pat_github_emu): dataframe of subject ID, GUIDs, comments """ req = requests.get( - "https://raw.githubusercontent.com/emu-project/data_pulling/master/data_pulling/data/pseudo_guid_list.csv", + "https://raw.githubusercontent.com/emu-project/guid_list/master/guid_list.csv", headers={ "accept": "application/vnd.github.v3.raw", "authorization": "token {}".format(pat_github_emu),