From d06fdff6516f6db7b9da6136660f053bf4e493e5 Mon Sep 17 00:00:00 2001 From: Nathan Muncy Date: Tue, 17 May 2022 17:30:00 -0400 Subject: [PATCH] Update README.md --- README.md | 16 ++++++++-------- 1 file changed, 8 insertions(+), 8 deletions(-) diff --git a/README.md b/README.md index 6ec6db5..d000d19 100644 --- a/README.md +++ b/README.md @@ -4,14 +4,14 @@ Pipeline used to take functional data from DICOMs through group-level analyses. ## Entry Points Following `python setup.py install` or `python setup.py develop`, use the following entry points to trigger cli. -- `check` : print help, run `cli.checks` -- `ashs` : trigger help of `cli.ashs` -- `reface` : trigger help of `cli.reface` -- `fmriprep` : trigger help of `cli.fmriprep` -- `task_subj` : trigger help of `cli.afni_task_subj` -- `rs_subj` : trigger help of `cli.afni_resting_subj` -- `task_group` : trigger help of `cli.afni_task_group` -- `rs_group` : trigger help of `cli.afni_resting_group` +- `check` : print help, run `cli.checks`, used to determine which participants have which preprocessed files. +- `ashs` : trigger help of `cli.ashs`, for running Automated Hippocampal Subfield Segmentation. +- `reface` : trigger help of `cli.reface`, for de/refacing participant T1w files. +- `fmriprep` : trigger help of `cli.fmriprep`, for moving data found in `dset` through FreeSurfer and fMRIPrep. +- `task_subj` : trigger help of `cli.afni_task_subj`, move task EPI output of `fmriprep` through extra preprocessing, deconvolution. +- `rs_subj` : trigger help of `cli.afni_resting_subj`, move resting EPI output of `fmriprep` through extra preprocessing, deconvolution. +- `task_group` : trigger help of `cli.afni_task_group`, conduct group-level task EPI analyses. +- `rs_group` : trigger help of `cli.afni_resting_group`, conduct group-level resting EPI analyses. ## Project organization