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# this readme file is for trouble shooting for the CLM-Microbe model at Ecological Model and Integration Laboratory (EMAIL) at San Diego State University. All technical notes regarding warning, errors, uncertainty set up, model configuration etc, are kept in this file. Please contact Xiaofeng Xu for questions, [email protected], 619-594-2279.
May 15, 2023
model stopped, below error found in cesm.log.... file
pio_support::pio_die:: myrank= -1 : ERROR: pionfget_mod.F90: 421 : NetCDF: Start+count exceeds dimension bound
application called MPI_Abort(MPI_COMM_WORLD, 1) - process 0
below error found in lnd.log.... file
Attempting to read ldomain from ?????
The problem was caused by the incorrect NetCDF file of pft-physiology.....nc
May 1, 2017, test
Mar 9, 2017
Generating surface data (Sanjiang station, 47.51, 133.50)
ncks -d lsmlon,267,267 -d lsmlat,275,275 /storage/projects/inputdata/lnd/clm2/surfdata_map/surfdata_360x720cru_simyr1850_c130415.nc surfdata_1x1pt_Sanjiang_CN-SJ1_I1850CLM45CN_simyr1850.nc
Generating mask file (Sanjiang station, 47.51, 133.50)
ncks -d ni,267,267 -d nj,275,275 /storage/projects/inputdata/atm/datm7/domain.clm/domain.360x720_ORCHIDEE0to360.100409.nc domain.lnd.1x1pt_CN-SJ1_navy.nc
February 27, 2017
with Fengming’s help, we got ride of warning “Use of qw(...) as parentheses is deprecated at …..”
modify only appears in 3 places:
Scripts/ccsm_tuils/Tools/cesm_setup: Line 252
Scripts/ccsm_utils/Case.template/ConfigCase.pm: Line 448
Models/drv/bld/build-namelist: Line 781
- foreach my $model qw(COMP_ATM COMP_LND COMP_ICE COMP_OCN COMP_GLC COMP_ROF COMP_WAV) {
+ foreach my $model (qw(COMP_ATM COMP_LND COMP_ICE COMP_OCN COMP_GLC COMP_ROF COMP_WAV)) {
// end Feb 27, 2017
Dec 19, 2016
This notes are for UQ package developed by Daniel Ricciuto from Oak Ridge National Laboratory.
The procedure
1) copy entire UQ folder to your target directory
2) UQ_???/ERGO_src/model_CLM.F90, update data file and path line 274
3) Update case name in parm_list_ch4, not path, only case name, first line
4) make ERGO_CLM
5) getoutput.f90, UQ.f90, not ncecessary to update all path and case information
6) lnd_in initial file (line 7 for finidat) and drv_in starty month and day (lines 85-86, start_ymd = 20000101, stop_n = 15),
notice: the executable file must be in the upper directoy for the run direcotry
UQ_runens_ch4.py, ..../bld/cesm.exe, this is one possible error, in line 172