Update data pipeline to work through with Mindy #374

	name: run-targets

	on:
	# push:
	# branches:
	# - main
	# - master
	# pull_request:
	# branches:
	# - main
	# - master
	# workflow_dispatch:
	# branches:
	# - '*'
	#schedule:
	# - cron: "0 8 * * *"

	env:
	GIT_CRYPT_KEY: ${{ secrets.GIT_CRYPT_KEY64 }}

	jobs:
	run-targets:
	runs-on: ubuntu-latest # Run on GitHub Actions runner
	#runs-on: [self-hosted, linux, x64, onprem-aegypti] # Run the workflow on EHA aegypti runner
	#runs-on: [self-hosted, linux, x64, onprem-prospero] # Run the workflow on EHA prospero runner
	container:
	image: rocker/verse:4.2.2

	steps:
	- uses: actions/checkout@v2

	- name: Install system dependencies
	run: \|
	apt-get update && apt-get install -y --no-install-recommends \
	git-crypt \
	libcurl4-openssl-dev \
	libssl-dev

	- name: Unlock secrets
	uses: sliteteam/[email protected]

	- name: Install packages from renv.lock (with cache)
	if: ${{ !env.ACT }} ## Doesn't work locally with ACT
	uses: r-lib/actions/setup-renv@v2
	with:
	cache-version: 2

	- name: Run targets workflow
	run: \|
	targets::tar_make()
	shell: Rscript {0}

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