diff --git a/catalog/forecasts/aquatics/Daily_Chlorophyll_a/collection.json b/catalog/forecasts/aquatics/Daily_Chlorophyll_a/collection.json index 6e91ede7d0..043ca09967 100644 --- a/catalog/forecasts/aquatics/Daily_Chlorophyll_a/collection.json +++ b/catalog/forecasts/aquatics/Daily_Chlorophyll_a/collection.json @@ -4,28 +4,24 @@ "stac_version": "1.0.0", "license": "CC0-1.0", "stac_extensions": [ - "https://stac-extensions.github.io/scientific/v1.0.0/schema.json", - "https://stac-extensions.github.io/item-assets/v1.0.0/schema.json", "https://stac-extensions.github.io/table/v1.2.0/schema.json" ], "type": "Collection", - "sci:doi": "10.1002/fee.2616", - "sci:publications": {}, "links": [ { "rel": "item", "type": "application/json", - "href": "./models/climatology.json" + "href": "./models/persistenceRW.json" }, { "rel": "item", "type": "application/json", - "href": "./models/persistenceRW.json" + "href": "./models/USGSHABs1.json" }, { "rel": "item", "type": "application/json", - "href": "./models/USGSHABs1.json" + "href": "./models/climatology.json" }, { "rel": "parent", @@ -70,7 +66,7 @@ "interval": [ [ "2024-02-07T00:00:00Z", - "2024-08-11T00:00:00Z" + "2024-10-14T00:00:00Z" ] ] } @@ -112,29 +108,24 @@ "description": "datetime that forecast was submitted" }, { - "name": "date", - "type": "date32[day]", - "description": {} + "name": "duration", + "type": "string", + "description": "temporal duration of forecast (hourly, daily, etc.); follows ISO 8601 duration convention" }, { - "name": "project_id", + "name": "model_id", "type": "string", - "description": "unique identifier for the forecast project" + "description": "unique model identifier" }, { - "name": "duration", + "name": "project_id", "type": "string", - "description": "temporal duration of forecast (hourly, daily, etc.); follows ISO 8601 duration convention" + "description": "unique identifier for the forecast project" }, { "name": "variable", "type": "string", "description": "name of forecasted variable" - }, - { - "name": "model_id", - "type": "string", - "description": "unique model identifier" } ], "assets": { diff --git a/catalog/forecasts/aquatics/Daily_Chlorophyll_a/models/USGSHABs1.json b/catalog/forecasts/aquatics/Daily_Chlorophyll_a/models/USGSHABs1.json index 613890d5f3..a65b7f173d 100644 --- a/catalog/forecasts/aquatics/Daily_Chlorophyll_a/models/USGSHABs1.json +++ b/catalog/forecasts/aquatics/Daily_Chlorophyll_a/models/USGSHABs1.json @@ -5,9 +5,7 @@ ], "type": "Feature", "id": "USGSHABs1_chla_P1D_forecast", - "bbox": [ - [-122.6692, 39.6328, -74.7781, 45.5175] - ], + "bbox": [-122.6692, 39.6328, -74.7781, 45.5175], "geometry": { "type": "MultiPoint", "coordinates": [ @@ -26,11 +24,12 @@ "properties": { "title": "USGSHABs1", "description": "All forecasts for the Daily_Chlorophyll_a variable for the USGSHABs1 model. Information for the model is provided as follows: Uses the randomForest::randomForest() R package model to train site-specific models for predicting river chl-a. Uses ensemble Kalman filter to adjust predicted chl-a states..\n The model predicts this variable at the following sites: USGS-14211720, USGS-14181500, USGS-05586300, USGS-05558300, USGS-05553700, USGS-05543010, USGS-05549500, USGS-01427510, USGS-14211010, USGS-01463500.\n Forecasts are the raw forecasts that includes all ensemble members or distribution parameters. Due to the size of the raw forecasts, we recommend accessing the forecast summaries or scores to analyze forecasts (unless you need the individual ensemble members)", - "start_datetime": "2024-02-13", - "end_datetime": "2024-08-09", + "datetime": "2024-09-10T00:00:00Z", + "start_datetime": "2024-02-13T00:00:00Z", + "end_datetime": "2024-10-12T00:00:00Z", "providers": [ { - "url": "jzwart@usgs.gov", + "url": "https://code.usgs.gov/wma/proxies/habs/habs-forecast-chl-usgsrc4cast/-/blob/main/2_model/src/chla_models.R?ref_type=heads", "name": "Jacob Zwart", "roles": [ "producer", @@ -104,29 +103,24 @@ "description": "datetime that forecast was submitted" }, { - "name": "date", - "type": "date32[day]", - "description": {} + "name": "duration", + "type": "string", + "description": "temporal duration of forecast (hourly, daily, etc.); follows ISO 8601 duration convention" }, { - "name": "project_id", + "name": "model_id", "type": "string", - "description": "unique identifier for the forecast project" + "description": "unique model identifier" }, { - "name": "duration", + "name": "project_id", "type": "string", - "description": "temporal duration of forecast (hourly, daily, etc.); follows ISO 8601 duration convention" + "description": "unique identifier for the forecast project" }, { "name": "variable", "type": "string", "description": "name of forecasted variable" - }, - { - "name": "model_id", - "type": "string", - "description": "unique model identifier" } ] }, @@ -161,6 +155,18 @@ "href": "https://code.usgs.gov/wma/proxies/habs/habs-forecast-chl-usgsrc4cast/-/blob/main/2_model/src/chla_models.R?ref_type=heads", "type": "text/html", "title": "Link for Model Code" + }, + { + "rel": "item", + "href": "https://radiantearth.github.io/stac-browser/#/external/raw.githubusercontent.com/eco4cast/usgsrc4cast-ci/main/catalog/forecasts/aquatics/Daily_Chlorophyll_a/models/USGSHABs1.json", + "type": "text/html", + "title": "Link for rendered STAC item" + }, + { + "rel": "item", + "href": "https://raw.githubusercontent.com/eco4cast/usgsrc4cast-ci/main/catalog/forecasts/aquatics/Daily_Chlorophyll_a/models/USGSHABs1.json", + "type": "text/html", + "title": "Link for raw JSON file" } ], "assets": { diff --git a/catalog/forecasts/aquatics/Daily_Chlorophyll_a/models/climatology.json b/catalog/forecasts/aquatics/Daily_Chlorophyll_a/models/climatology.json index 1d51d42283..ca502c0e46 100644 --- a/catalog/forecasts/aquatics/Daily_Chlorophyll_a/models/climatology.json +++ b/catalog/forecasts/aquatics/Daily_Chlorophyll_a/models/climatology.json @@ -5,32 +5,31 @@ ], "type": "Feature", "id": "climatology_chla_P1D_forecast", - "bbox": [ - [-122.6692, 39.6328, -74.7781, 45.5175] - ], + "bbox": [-122.6692, 39.6328, -74.7781, 45.5175], "geometry": { "type": "MultiPoint", "coordinates": [ + [-75.0574, 41.7567], + [-74.7781, 40.2217], + [-88.6142, 41.2999], [-88.2515, 42.31], [-88.984, 41.3248], [-89.3562, 41.1073], [-90.6077, 39.6328], [-122.2974, 44.7538], [-122.5773, 45.3793], - [-122.6692, 45.5175], - [-75.0574, 41.7567], - [-74.7781, 40.2217], - [-88.6142, 41.2999] + [-122.6692, 45.5175] ] }, "properties": { "title": "climatology", - "description": "All forecasts for the Daily_Chlorophyll_a variable for the climatology model. Information for the model is provided as follows: Forecasts stream chlorophyll-a based on the historic average and standard deviation for that given site and day-of-year..\n The model predicts this variable at the following sites: USGS-05549500, USGS-05553700, USGS-05558300, USGS-05586300, USGS-14181500, USGS-14211010, USGS-14211720, USGS-01427510, USGS-01463500, USGS-05543010.\n Forecasts are the raw forecasts that includes all ensemble members or distribution parameters. Due to the size of the raw forecasts, we recommend accessing the forecast summaries or scores to analyze forecasts (unless you need the individual ensemble members)", - "start_datetime": "2024-02-07", - "end_datetime": "2024-08-11", + "description": "All forecasts for the Daily_Chlorophyll_a variable for the climatology model. Information for the model is provided as follows: Forecasts stream chlorophyll-a based on the historic average and standard deviation for that given site and day-of-year..\n The model predicts this variable at the following sites: USGS-01427510, USGS-01463500, USGS-05543010, USGS-05549500, USGS-05553700, USGS-05558300, USGS-05586300, USGS-14181500, USGS-14211010, USGS-14211720.\n Forecasts are the raw forecasts that includes all ensemble members or distribution parameters. Due to the size of the raw forecasts, we recommend accessing the forecast summaries or scores to analyze forecasts (unless you need the individual ensemble members)", + "datetime": "2024-09-10T00:00:00Z", + "start_datetime": "2024-02-07T00:00:00Z", + "end_datetime": "2024-10-14T00:00:00Z", "providers": [ { - "url": "jzwart@usgs.gov", + "url": "https://github.com/eco4cast/usgsrc4cast-ci/blob/main/baseline_models/models/aquatics_climatology.R", "name": "Jacob Zwart", "roles": [ "producer", @@ -56,16 +55,16 @@ "chla", "Daily", "P1D", + "USGS-01427510", + "USGS-01463500", + "USGS-05543010", "USGS-05549500", "USGS-05553700", "USGS-05558300", "USGS-05586300", "USGS-14181500", "USGS-14211010", - "USGS-14211720", - "USGS-01427510", - "USGS-01463500", - "USGS-05543010" + "USGS-14211720" ], "table:columns": [ { @@ -104,29 +103,24 @@ "description": "datetime that forecast was submitted" }, { - "name": "date", - "type": "date32[day]", - "description": {} + "name": "duration", + "type": "string", + "description": "temporal duration of forecast (hourly, daily, etc.); follows ISO 8601 duration convention" }, { - "name": "project_id", + "name": "model_id", "type": "string", - "description": "unique identifier for the forecast project" + "description": "unique model identifier" }, { - "name": "duration", + "name": "project_id", "type": "string", - "description": "temporal duration of forecast (hourly, daily, etc.); follows ISO 8601 duration convention" + "description": "unique identifier for the forecast project" }, { "name": "variable", "type": "string", "description": "name of forecasted variable" - }, - { - "name": "model_id", - "type": "string", - "description": "unique model identifier" } ] }, @@ -161,6 +155,18 @@ "href": "https://github.com/eco4cast/usgsrc4cast-ci/blob/main/baseline_models/models/aquatics_climatology.R", "type": "text/html", "title": "Link for Model Code" + }, + { + "rel": "item", + "href": "https://radiantearth.github.io/stac-browser/#/external/raw.githubusercontent.com/eco4cast/usgsrc4cast-ci/main/catalog/forecasts/aquatics/Daily_Chlorophyll_a/models/climatology.json", + "type": "text/html", + "title": "Link for rendered STAC item" + }, + { + "rel": "item", + "href": "https://raw.githubusercontent.com/eco4cast/usgsrc4cast-ci/main/catalog/forecasts/aquatics/Daily_Chlorophyll_a/models/climatology.json", + "type": "text/html", + "title": "Link for raw JSON file" } ], "assets": { diff --git a/catalog/forecasts/aquatics/Daily_Chlorophyll_a/models/persistenceRW.json b/catalog/forecasts/aquatics/Daily_Chlorophyll_a/models/persistenceRW.json index 7f5564e833..1912a69b87 100644 --- a/catalog/forecasts/aquatics/Daily_Chlorophyll_a/models/persistenceRW.json +++ b/catalog/forecasts/aquatics/Daily_Chlorophyll_a/models/persistenceRW.json @@ -5,32 +5,31 @@ ], "type": "Feature", "id": "persistenceRW_chla_P1D_forecast", - "bbox": [ - [-122.6692, 39.6328, -74.7781, 45.5175] - ], + "bbox": [-122.6692, 39.6328, -74.7781, 45.5175], "geometry": { "type": "MultiPoint", "coordinates": [ + [-122.2974, 44.7538], + [-122.5773, 45.3793], + [-122.6692, 45.5175], [-75.0574, 41.7567], [-74.7781, 40.2217], [-88.6142, 41.2999], [-88.2515, 42.31], [-88.984, 41.3248], [-89.3562, 41.1073], - [-90.6077, 39.6328], - [-122.2974, 44.7538], - [-122.5773, 45.3793], - [-122.6692, 45.5175] + [-90.6077, 39.6328] ] }, "properties": { "title": "persistenceRW", - "description": "All forecasts for the Daily_Chlorophyll_a variable for the persistenceRW model. Information for the model is provided as follows: Random walk model based on most recent stream chl-a observations using the fable::RW() model..\n The model predicts this variable at the following sites: USGS-01427510, USGS-01463500, USGS-05543010, USGS-05549500, USGS-05553700, USGS-05558300, USGS-05586300, USGS-14181500, USGS-14211010, USGS-14211720.\n Forecasts are the raw forecasts that includes all ensemble members or distribution parameters. Due to the size of the raw forecasts, we recommend accessing the forecast summaries or scores to analyze forecasts (unless you need the individual ensemble members)", - "start_datetime": "2024-02-07", - "end_datetime": "2024-08-10", + "description": "All forecasts for the Daily_Chlorophyll_a variable for the persistenceRW model. Information for the model is provided as follows: Random walk model based on most recent stream chl-a observations using the fable::RW() model..\n The model predicts this variable at the following sites: USGS-14181500, USGS-14211010, USGS-14211720, USGS-01427510, USGS-01463500, USGS-05543010, USGS-05549500, USGS-05553700, USGS-05558300, USGS-05586300.\n Forecasts are the raw forecasts that includes all ensemble members or distribution parameters. Due to the size of the raw forecasts, we recommend accessing the forecast summaries or scores to analyze forecasts (unless you need the individual ensemble members)", + "datetime": "2024-09-10T00:00:00Z", + "start_datetime": "2024-02-07T00:00:00Z", + "end_datetime": "2024-10-13T00:00:00Z", "providers": [ { - "url": "jzwart@usgs.gov", + "url": "https://github.com/eco4cast/usgsrc4cast-ci/blob/main/baseline_models/models/aquatics_persistenceRW.R", "name": "Jacob Zwart", "roles": [ "producer", @@ -56,16 +55,16 @@ "chla", "Daily", "P1D", + "USGS-14181500", + "USGS-14211010", + "USGS-14211720", "USGS-01427510", "USGS-01463500", "USGS-05543010", "USGS-05549500", "USGS-05553700", "USGS-05558300", - "USGS-05586300", - "USGS-14181500", - "USGS-14211010", - "USGS-14211720" + "USGS-05586300" ], "table:columns": [ { @@ -104,29 +103,24 @@ "description": "datetime that forecast was submitted" }, { - "name": "date", - "type": "date32[day]", - "description": {} + "name": "duration", + "type": "string", + "description": "temporal duration of forecast (hourly, daily, etc.); follows ISO 8601 duration convention" }, { - "name": "project_id", + "name": "model_id", "type": "string", - "description": "unique identifier for the forecast project" + "description": "unique model identifier" }, { - "name": "duration", + "name": "project_id", "type": "string", - "description": "temporal duration of forecast (hourly, daily, etc.); follows ISO 8601 duration convention" + "description": "unique identifier for the forecast project" }, { "name": "variable", "type": "string", "description": "name of forecasted variable" - }, - { - "name": "model_id", - "type": "string", - "description": "unique model identifier" } ] }, @@ -161,6 +155,18 @@ "href": "https://github.com/eco4cast/usgsrc4cast-ci/blob/main/baseline_models/models/aquatics_persistenceRW.R", "type": "text/html", "title": "Link for Model Code" + }, + { + "rel": "item", + "href": "https://radiantearth.github.io/stac-browser/#/external/raw.githubusercontent.com/eco4cast/usgsrc4cast-ci/main/catalog/forecasts/aquatics/Daily_Chlorophyll_a/models/persistenceRW.json", + "type": "text/html", + "title": "Link for rendered STAC item" + }, + { + "rel": "item", + "href": "https://raw.githubusercontent.com/eco4cast/usgsrc4cast-ci/main/catalog/forecasts/aquatics/Daily_Chlorophyll_a/models/persistenceRW.json", + "type": "text/html", + "title": "Link for raw JSON file" } ], "assets": { diff --git a/catalog/forecasts/aquatics/collection.json b/catalog/forecasts/aquatics/collection.json index feeae5e555..55bb80b672 100644 --- a/catalog/forecasts/aquatics/collection.json +++ b/catalog/forecasts/aquatics/collection.json @@ -5,12 +5,11 @@ "license": "CC0-1.0", "stac_extensions": [ "https://stac-extensions.github.io/scientific/v1.0.0/schema.json", - "https://stac-extensions.github.io/item-assets/v1.0.0/schema.json", "https://stac-extensions.github.io/table/v1.2.0/schema.json" ], "type": "Collection", "sci:doi": "10.1002/fee.2616", - "sci:publications": {}, + "sci:publications": [null], "links": [ { "rel": "child", @@ -60,7 +59,7 @@ "interval": [ [ "2024-02-07T00:00:00Z", - "2024-08-11T00:00:00Z" + "2024-10-14T00:00:00Z" ] ] } @@ -102,29 +101,24 @@ "description": "datetime that forecast was submitted" }, { - "name": "date", - "type": "date32[day]", - "description": {} + "name": "duration", + "type": "string", + "description": "temporal duration of forecast (hourly, daily, etc.); follows ISO 8601 duration convention" }, { - "name": "project_id", + "name": "model_id", "type": "string", - "description": "unique identifier for the forecast project" + "description": "unique model identifier" }, { - "name": "duration", + "name": "project_id", "type": "string", - "description": "temporal duration of forecast (hourly, daily, etc.); follows ISO 8601 duration convention" + "description": "unique identifier for the forecast project" }, { "name": "variable", "type": "string", "description": "name of forecasted variable" - }, - { - "name": "model_id", - "type": "string", - "description": "unique model identifier" } ], "assets": { diff --git a/catalog/forecasts/collection.json b/catalog/forecasts/collection.json index de4f9109f6..fa469b6546 100644 --- a/catalog/forecasts/collection.json +++ b/catalog/forecasts/collection.json @@ -4,8 +4,6 @@ "stac_version": "1.0.0", "license": "CC0-1.0", "stac_extensions": [ - "https://stac-extensions.github.io/scientific/v1.0.0/schema.json", - "https://stac-extensions.github.io/item-assets/v1.0.0/schema.json", "https://stac-extensions.github.io/table/v1.2.0/schema.json" ], "type": "Collection", @@ -59,7 +57,7 @@ "interval": [ [ "2024-02-07T00:00:00Z", - "2024-08-11T00:00:00Z" + "2024-10-14T00:00:00Z" ] ] } @@ -101,29 +99,24 @@ "description": "datetime that forecast was submitted" }, { - "name": "date", - "type": "date32[day]", - "description": {} + "name": "duration", + "type": "string", + "description": "temporal duration of forecast (hourly, daily, etc.); follows ISO 8601 duration convention" }, { - "name": "project_id", + "name": "model_id", "type": "string", - "description": "unique identifier for the forecast project" + "description": "unique model identifier" }, { - "name": "duration", + "name": "project_id", "type": "string", - "description": "temporal duration of forecast (hourly, daily, etc.); follows ISO 8601 duration convention" + "description": "unique identifier for the forecast project" }, { "name": "variable", "type": "string", "description": "name of forecasted variable" - }, - { - "name": "model_id", - "type": "string", - "description": "unique model identifier" } ], "assets": { diff --git a/catalog/inventory/collection.json b/catalog/inventory/collection.json index 2894c61108..8295bb15ab 100644 --- a/catalog/inventory/collection.json +++ b/catalog/inventory/collection.json @@ -58,7 +58,7 @@ "interval": [ [ "2023-01-01T00:00:00Z", - "2024-08-11T00:00:00Z" + "2024-10-14T00:00:00Z" ] ] } diff --git a/catalog/noaa_forecasts/Pseudo/collection.json b/catalog/noaa_forecasts/Pseudo/collection.json index 0f1c2beff2..0e8f158ef0 100644 --- a/catalog/noaa_forecasts/Pseudo/collection.json +++ b/catalog/noaa_forecasts/Pseudo/collection.json @@ -53,7 +53,7 @@ "interval": [ [ "2020-01-01T00:00:00Z", - "2024-07-08T00:00:00Z" + "2024-09-10T00:00:00Z" ] ] } diff --git a/catalog/noaa_forecasts/Stage1-stats/collection.json b/catalog/noaa_forecasts/Stage1-stats/collection.json index 538d4496e7..96c78d68ef 100644 --- a/catalog/noaa_forecasts/Stage1-stats/collection.json +++ b/catalog/noaa_forecasts/Stage1-stats/collection.json @@ -53,7 +53,7 @@ "interval": [ [ "2020-01-01T00:00:00Z", - "2024-07-08T00:00:00Z" + "2024-09-10T00:00:00Z" ] ] } diff --git a/catalog/noaa_forecasts/Stage1/collection.json b/catalog/noaa_forecasts/Stage1/collection.json index 682d3709e3..ddd3c127e8 100644 --- a/catalog/noaa_forecasts/Stage1/collection.json +++ b/catalog/noaa_forecasts/Stage1/collection.json @@ -53,7 +53,7 @@ "interval": [ [ "2020-01-01T00:00:00Z", - "2024-07-08T00:00:00Z" + "2024-09-10T00:00:00Z" ] ] } diff --git a/catalog/noaa_forecasts/Stage2/collection.json b/catalog/noaa_forecasts/Stage2/collection.json index 7dd4852441..6e73313c8d 100644 --- a/catalog/noaa_forecasts/Stage2/collection.json +++ b/catalog/noaa_forecasts/Stage2/collection.json @@ -53,7 +53,7 @@ "interval": [ [ "2020-01-01T00:00:00Z", - "2024-07-08T00:00:00Z" + "2024-09-10T00:00:00Z" ] ] } diff --git a/catalog/noaa_forecasts/Stage3/collection.json b/catalog/noaa_forecasts/Stage3/collection.json index f45291883e..2bd7b2d7ba 100644 --- a/catalog/noaa_forecasts/Stage3/collection.json +++ b/catalog/noaa_forecasts/Stage3/collection.json @@ -53,7 +53,7 @@ "interval": [ [ "2020-01-01T00:00:00Z", - "2024-07-08T00:00:00Z" + "2024-09-10T00:00:00Z" ] ] } diff --git a/catalog/noaa_forecasts/collection.json b/catalog/noaa_forecasts/collection.json index d9be3395d7..ea2e829c54 100644 --- a/catalog/noaa_forecasts/collection.json +++ b/catalog/noaa_forecasts/collection.json @@ -4,8 +4,6 @@ "stac_version": "1.0.0", "license": "CC0-1.0", "stac_extensions": [ - "https://stac-extensions.github.io/scientific/v1.0.0/schema.json", - "https://stac-extensions.github.io/item-assets/v1.0.0/schema.json", "https://stac-extensions.github.io/table/v1.2.0/schema.json" ], "type": "Collection", @@ -83,7 +81,7 @@ "interval": [ [ "2020-01-01T00:00:00Z", - "2024-07-08T00:00:00Z" + "2024-09-10T00:00:00Z" ] ] } diff --git a/catalog/scores/aquatics/Daily_Chlorophyll_a/collection.json b/catalog/scores/aquatics/Daily_Chlorophyll_a/collection.json index 172a9f9421..21a9adc8df 100644 --- a/catalog/scores/aquatics/Daily_Chlorophyll_a/collection.json +++ b/catalog/scores/aquatics/Daily_Chlorophyll_a/collection.json @@ -4,13 +4,9 @@ "stac_version": "1.0.0", "license": "CC0-1.0", "stac_extensions": [ - "https://stac-extensions.github.io/scientific/v1.0.0/schema.json", - "https://stac-extensions.github.io/item-assets/v1.0.0/schema.json", "https://stac-extensions.github.io/table/v1.2.0/schema.json" ], "type": "Collection", - "sci:doi": "10.1002/fee.2616", - "sci:publications": {}, "links": [ { "rel": "item", @@ -69,8 +65,8 @@ "temporal": { "interval": [ [ - "2024-02-07T00:00:00Z", - "2024-07-08T00:00:00Z" + "2024-02-08T00:00:00Z", + "2024-09-10T00:00:00Z" ] ] } @@ -152,24 +148,24 @@ "description": "upper 10 percentile value of forecast" }, { - "name": "project_id", + "name": "duration", "type": "string", - "description": "unique project identifier" + "description": "temporal duration of forecast (hourly = PT1H, daily = P1D, etc.); follows ISO 8601 duration convention" }, { - "name": "duration", + "name": "model_id", "type": "string", - "description": "temporal duration of forecast (hourly = PT1H, daily = P1D, etc.); follows ISO 8601 duration convention" + "description": "unique model identifier" }, { - "name": "variable", + "name": "project_id", "type": "string", - "description": "name of forecasted variable" + "description": "unique project identifier" }, { - "name": "model_id", + "name": "variable", "type": "string", - "description": "unique model identifier" + "description": "name of forecasted variable" } ], "assets": { diff --git a/catalog/scores/aquatics/Daily_Chlorophyll_a/models/USGSHABs1.json b/catalog/scores/aquatics/Daily_Chlorophyll_a/models/USGSHABs1.json index 5b7548b853..c1d00ebac8 100644 --- a/catalog/scores/aquatics/Daily_Chlorophyll_a/models/USGSHABs1.json +++ b/catalog/scores/aquatics/Daily_Chlorophyll_a/models/USGSHABs1.json @@ -5,32 +5,31 @@ ], "type": "Feature", "id": "USGSHABs1_chla_P1D_scores", - "bbox": [ - [-122.6692, 39.6328, -74.7781, 45.5175] - ], + "bbox": [-122.6692, 39.6328, -74.7781, 45.5175], "geometry": { "type": "MultiPoint", "coordinates": [ - [-75.0574, 41.7567], - [-88.6142, 41.2999], - [-88.2515, 42.31], - [-88.984, 41.3248], - [-89.3562, 41.1073], [-90.6077, 39.6328], [-122.2974, 44.7538], + [-122.5773, 45.3793], [-122.6692, 45.5175], + [-75.0574, 41.7567], [-74.7781, 40.2217], - [-122.5773, 45.3793] + [-88.6142, 41.2999], + [-88.2515, 42.31], + [-88.984, 41.3248], + [-89.3562, 41.1073] ] }, "properties": { "title": "USGSHABs1", - "description": "All scores for the Daily_Chlorophyll_a variable for the USGSHABs1 model. Information for the model is provided as follows: Uses the randomForest::randomForest() R package model to train site-specific models for predicting river chl-a. Uses ensemble Kalman filter to adjust predicted chl-a states..\n The model predicts this variable at the following sites: USGS-01427510, USGS-05543010, USGS-05549500, USGS-05553700, USGS-05558300, USGS-05586300, USGS-14181500, USGS-14211720, USGS-01463500, USGS-14211010.\n Scores are metrics that describe how well forecasts compare to observations. The scores catalog includes are summaries of the forecasts (i.e., mean, median, confidence intervals), matched observations (if available), and scores (metrics of how well the model distribution compares to observations)", - "start_datetime": "2024-02-13", - "end_datetime": "2024-07-08", + "description": "All scores for the Daily_Chlorophyll_a variable for the USGSHABs1 model. Information for the model is provided as follows: Uses the randomForest::randomForest() R package model to train site-specific models for predicting river chl-a. Uses ensemble Kalman filter to adjust predicted chl-a states..\n The model predicts this variable at the following sites: USGS-05586300, USGS-14181500, USGS-14211010, USGS-14211720, USGS-01427510, USGS-01463500, USGS-05543010, USGS-05549500, USGS-05553700, USGS-05558300.\n Scores are metrics that describe how well forecasts compare to observations. The scores catalog includes are summaries of the forecasts (i.e., mean, median, confidence intervals), matched observations (if available), and scores (metrics of how well the model distribution compares to observations)", + "datetime": "2024-09-10T00:00:00Z", + "start_datetime": "2024-04-15T00:00:00Z", + "end_datetime": "2024-09-10T00:00:00Z", "providers": [ { - "url": "jzwart@usgs.gov", + "url": "https://code.usgs.gov/wma/proxies/habs/habs-forecast-chl-usgsrc4cast/-/blob/main/2_model/src/chla_models.R?ref_type=heads", "name": "Jacob Zwart", "roles": [ "producer", @@ -56,16 +55,16 @@ "chla", "Daily", "P1D", - "USGS-01427510", - "USGS-05543010", - "USGS-05549500", - "USGS-05553700", - "USGS-05558300", "USGS-05586300", "USGS-14181500", + "USGS-14211010", "USGS-14211720", + "USGS-01427510", "USGS-01463500", - "USGS-14211010" + "USGS-05543010", + "USGS-05549500", + "USGS-05553700", + "USGS-05558300" ], "table:columns": [ { @@ -144,24 +143,24 @@ "description": "upper 10 percentile value of forecast" }, { - "name": "project_id", + "name": "duration", "type": "string", - "description": "unique project identifier" + "description": "temporal duration of forecast (hourly = PT1H, daily = P1D, etc.); follows ISO 8601 duration convention" }, { - "name": "duration", + "name": "model_id", "type": "string", - "description": "temporal duration of forecast (hourly = PT1H, daily = P1D, etc.); follows ISO 8601 duration convention" + "description": "unique model identifier" }, { - "name": "variable", + "name": "project_id", "type": "string", - "description": "name of forecasted variable" + "description": "unique project identifier" }, { - "name": "model_id", + "name": "variable", "type": "string", - "description": "unique model identifier" + "description": "name of forecasted variable" } ] }, @@ -196,6 +195,18 @@ "href": "https://code.usgs.gov/wma/proxies/habs/habs-forecast-chl-usgsrc4cast/-/blob/main/2_model/src/chla_models.R?ref_type=heads", "type": "text/html", "title": "Link for Model Code" + }, + { + "rel": "item", + "href": "https://radiantearth.github.io/stac-browser/#/external/raw.githubusercontent.com/eco4cast/usgsrc4cast-ci/main/catalog/scores/aquatics/Daily_Chlorophyll_a/models/USGSHABs1.json", + "type": "text/html", + "title": "Link for rendered STAC item" + }, + { + "rel": "item", + "href": "https://raw.githubusercontent.com/eco4cast/usgsrc4cast-ci/main/catalog/scores/aquatics/Daily_Chlorophyll_a/models/USGSHABs1.json", + "type": "text/html", + "title": "Link for raw JSON file" } ], "assets": { diff --git a/catalog/scores/aquatics/Daily_Chlorophyll_a/models/climatology.json b/catalog/scores/aquatics/Daily_Chlorophyll_a/models/climatology.json index a594aae45a..febcbac23d 100644 --- a/catalog/scores/aquatics/Daily_Chlorophyll_a/models/climatology.json +++ b/catalog/scores/aquatics/Daily_Chlorophyll_a/models/climatology.json @@ -5,9 +5,7 @@ ], "type": "Feature", "id": "climatology_chla_P1D_scores", - "bbox": [ - [-122.6692, 39.6328, -74.7781, 45.5175] - ], + "bbox": [-122.6692, 39.6328, -74.7781, 45.5175], "geometry": { "type": "MultiPoint", "coordinates": [ @@ -26,11 +24,12 @@ "properties": { "title": "climatology", "description": "All scores for the Daily_Chlorophyll_a variable for the climatology model. Information for the model is provided as follows: Forecasts stream chlorophyll-a based on the historic average and standard deviation for that given site and day-of-year..\n The model predicts this variable at the following sites: USGS-01427510, USGS-01463500, USGS-05543010, USGS-05553700, USGS-05558300, USGS-05586300, USGS-14181500, USGS-14211010, USGS-14211720, USGS-05549500.\n Scores are metrics that describe how well forecasts compare to observations. The scores catalog includes are summaries of the forecasts (i.e., mean, median, confidence intervals), matched observations (if available), and scores (metrics of how well the model distribution compares to observations)", - "start_datetime": "2024-02-07", - "end_datetime": "2024-07-08", + "datetime": "2024-09-10T00:00:00Z", + "start_datetime": "2024-02-08T00:00:00Z", + "end_datetime": "2024-09-10T00:00:00Z", "providers": [ { - "url": "jzwart@usgs.gov", + "url": "https://github.com/eco4cast/usgsrc4cast-ci/blob/main/baseline_models/models/aquatics_climatology.R", "name": "Jacob Zwart", "roles": [ "producer", @@ -144,24 +143,24 @@ "description": "upper 10 percentile value of forecast" }, { - "name": "project_id", + "name": "duration", "type": "string", - "description": "unique project identifier" + "description": "temporal duration of forecast (hourly = PT1H, daily = P1D, etc.); follows ISO 8601 duration convention" }, { - "name": "duration", + "name": "model_id", "type": "string", - "description": "temporal duration of forecast (hourly = PT1H, daily = P1D, etc.); follows ISO 8601 duration convention" + "description": "unique model identifier" }, { - "name": "variable", + "name": "project_id", "type": "string", - "description": "name of forecasted variable" + "description": "unique project identifier" }, { - "name": "model_id", + "name": "variable", "type": "string", - "description": "unique model identifier" + "description": "name of forecasted variable" } ] }, @@ -196,6 +195,18 @@ "href": "https://github.com/eco4cast/usgsrc4cast-ci/blob/main/baseline_models/models/aquatics_climatology.R", "type": "text/html", "title": "Link for Model Code" + }, + { + "rel": "item", + "href": "https://radiantearth.github.io/stac-browser/#/external/raw.githubusercontent.com/eco4cast/usgsrc4cast-ci/main/catalog/scores/aquatics/Daily_Chlorophyll_a/models/climatology.json", + "type": "text/html", + "title": "Link for rendered STAC item" + }, + { + "rel": "item", + "href": "https://raw.githubusercontent.com/eco4cast/usgsrc4cast-ci/main/catalog/scores/aquatics/Daily_Chlorophyll_a/models/climatology.json", + "type": "text/html", + "title": "Link for raw JSON file" } ], "assets": { diff --git a/catalog/scores/aquatics/Daily_Chlorophyll_a/models/persistenceRW.json b/catalog/scores/aquatics/Daily_Chlorophyll_a/models/persistenceRW.json index 7b47c5dd6e..930b81f0ba 100644 --- a/catalog/scores/aquatics/Daily_Chlorophyll_a/models/persistenceRW.json +++ b/catalog/scores/aquatics/Daily_Chlorophyll_a/models/persistenceRW.json @@ -5,9 +5,7 @@ ], "type": "Feature", "id": "persistenceRW_chla_P1D_scores", - "bbox": [ - [-122.6692, 39.6328, -74.7781, 45.5175] - ], + "bbox": [-122.6692, 39.6328, -74.7781, 45.5175], "geometry": { "type": "MultiPoint", "coordinates": [ @@ -26,11 +24,12 @@ "properties": { "title": "persistenceRW", "description": "All scores for the Daily_Chlorophyll_a variable for the persistenceRW model. Information for the model is provided as follows: Random walk model based on most recent stream chl-a observations using the fable::RW() model..\n The model predicts this variable at the following sites: USGS-01427510, USGS-01463500, USGS-05543010, USGS-05549500, USGS-05553700, USGS-05558300, USGS-05586300, USGS-14181500, USGS-14211010, USGS-14211720.\n Scores are metrics that describe how well forecasts compare to observations. The scores catalog includes are summaries of the forecasts (i.e., mean, median, confidence intervals), matched observations (if available), and scores (metrics of how well the model distribution compares to observations)", - "start_datetime": "2024-02-07", - "end_datetime": "2024-07-08", + "datetime": "2024-09-10T00:00:00Z", + "start_datetime": "2024-02-08T00:00:00Z", + "end_datetime": "2024-09-10T00:00:00Z", "providers": [ { - "url": "jzwart@usgs.gov", + "url": "https://github.com/eco4cast/usgsrc4cast-ci/blob/main/baseline_models/models/aquatics_persistenceRW.R", "name": "Jacob Zwart", "roles": [ "producer", @@ -144,24 +143,24 @@ "description": "upper 10 percentile value of forecast" }, { - "name": "project_id", + "name": "duration", "type": "string", - "description": "unique project identifier" + "description": "temporal duration of forecast (hourly = PT1H, daily = P1D, etc.); follows ISO 8601 duration convention" }, { - "name": "duration", + "name": "model_id", "type": "string", - "description": "temporal duration of forecast (hourly = PT1H, daily = P1D, etc.); follows ISO 8601 duration convention" + "description": "unique model identifier" }, { - "name": "variable", + "name": "project_id", "type": "string", - "description": "name of forecasted variable" + "description": "unique project identifier" }, { - "name": "model_id", + "name": "variable", "type": "string", - "description": "unique model identifier" + "description": "name of forecasted variable" } ] }, @@ -196,6 +195,18 @@ "href": "https://github.com/eco4cast/usgsrc4cast-ci/blob/main/baseline_models/models/aquatics_persistenceRW.R", "type": "text/html", "title": "Link for Model Code" + }, + { + "rel": "item", + "href": "https://radiantearth.github.io/stac-browser/#/external/raw.githubusercontent.com/eco4cast/usgsrc4cast-ci/main/catalog/scores/aquatics/Daily_Chlorophyll_a/models/persistenceRW.json", + "type": "text/html", + "title": "Link for rendered STAC item" + }, + { + "rel": "item", + "href": "https://raw.githubusercontent.com/eco4cast/usgsrc4cast-ci/main/catalog/scores/aquatics/Daily_Chlorophyll_a/models/persistenceRW.json", + "type": "text/html", + "title": "Link for raw JSON file" } ], "assets": { diff --git a/catalog/scores/aquatics/collection.json b/catalog/scores/aquatics/collection.json index acd807e289..0ff660298d 100644 --- a/catalog/scores/aquatics/collection.json +++ b/catalog/scores/aquatics/collection.json @@ -5,12 +5,11 @@ "license": "CC0-1.0", "stac_extensions": [ "https://stac-extensions.github.io/scientific/v1.0.0/schema.json", - "https://stac-extensions.github.io/item-assets/v1.0.0/schema.json", "https://stac-extensions.github.io/table/v1.2.0/schema.json" ], "type": "Collection", "sci:doi": "10.1002/fee.2616", - "sci:publications": {}, + "sci:publications": [null], "links": [ { "rel": "child", @@ -59,8 +58,8 @@ "temporal": { "interval": [ [ - "2024-02-07T00:00:00Z", - "2024-07-08T00:00:00Z" + "2024-02-08T00:00:00Z", + "2024-09-10T00:00:00Z" ] ] } @@ -142,24 +141,24 @@ "description": "upper 10 percentile value of forecast" }, { - "name": "project_id", + "name": "duration", "type": "string", - "description": "unique project identifier" + "description": "temporal duration of forecast (hourly = PT1H, daily = P1D, etc.); follows ISO 8601 duration convention" }, { - "name": "duration", + "name": "model_id", "type": "string", - "description": "temporal duration of forecast (hourly = PT1H, daily = P1D, etc.); follows ISO 8601 duration convention" + "description": "unique model identifier" }, { - "name": "variable", + "name": "project_id", "type": "string", - "description": "name of forecasted variable" + "description": "unique project identifier" }, { - "name": "model_id", + "name": "variable", "type": "string", - "description": "unique model identifier" + "description": "name of forecasted variable" } ], "assets": { diff --git a/catalog/scores/collection.json b/catalog/scores/collection.json index 5df107f101..25469e3a6f 100644 --- a/catalog/scores/collection.json +++ b/catalog/scores/collection.json @@ -4,8 +4,6 @@ "stac_version": "1.0.0", "license": "CC0-1.0", "stac_extensions": [ - "https://stac-extensions.github.io/scientific/v1.0.0/schema.json", - "https://stac-extensions.github.io/item-assets/v1.0.0/schema.json", "https://stac-extensions.github.io/table/v1.2.0/schema.json" ], "type": "Collection", @@ -58,8 +56,8 @@ "temporal": { "interval": [ [ - "2024-02-07T00:00:00Z", - "2024-07-08T00:00:00Z" + "2024-02-08T00:00:00Z", + "2024-09-10T00:00:00Z" ] ] } @@ -141,24 +139,24 @@ "description": "upper 10 percentile value of forecast" }, { - "name": "project_id", + "name": "duration", "type": "string", - "description": "unique project identifier" + "description": "temporal duration of forecast (hourly = PT1H, daily = P1D, etc.); follows ISO 8601 duration convention" }, { - "name": "duration", + "name": "model_id", "type": "string", - "description": "temporal duration of forecast (hourly = PT1H, daily = P1D, etc.); follows ISO 8601 duration convention" + "description": "unique model identifier" }, { - "name": "variable", + "name": "project_id", "type": "string", - "description": "name of forecasted variable" + "description": "unique project identifier" }, { - "name": "model_id", + "name": "variable", "type": "string", - "description": "unique model identifier" + "description": "name of forecasted variable" } ], "assets": { diff --git a/catalog/sites/collection.json b/catalog/sites/collection.json index 743a86bace..0304583af6 100644 --- a/catalog/sites/collection.json +++ b/catalog/sites/collection.json @@ -58,7 +58,7 @@ "interval": [ [ "2009-01-22T00:00:00Z", - "2024-07-08T00:00:00Z" + "2024-09-10T00:00:00Z" ] ] } diff --git a/catalog/summaries/aquatics/Daily_Chlorophyll_a/collection.json b/catalog/summaries/aquatics/Daily_Chlorophyll_a/collection.json index 4f89c22e7b..45b6605ebd 100644 --- a/catalog/summaries/aquatics/Daily_Chlorophyll_a/collection.json +++ b/catalog/summaries/aquatics/Daily_Chlorophyll_a/collection.json @@ -4,28 +4,24 @@ "stac_version": "1.0.0", "license": "CC0-1.0", "stac_extensions": [ - "https://stac-extensions.github.io/scientific/v1.0.0/schema.json", - "https://stac-extensions.github.io/item-assets/v1.0.0/schema.json", "https://stac-extensions.github.io/table/v1.2.0/schema.json" ], "type": "Collection", - "sci:doi": "10.1002/fee.2616", - "sci:publications": {}, "links": [ { "rel": "item", "type": "application/json", - "href": "./models/climatology.json" + "href": "./models/persistenceRW.json" }, { "rel": "item", "type": "application/json", - "href": "./models/persistenceRW.json" + "href": "./models/USGSHABs1.json" }, { "rel": "item", "type": "application/json", - "href": "./models/USGSHABs1.json" + "href": "./models/climatology.json" }, { "rel": "parent", @@ -70,7 +66,7 @@ "interval": [ [ "2024-02-07T00:00:00Z", - "2024-08-11T00:00:00Z" + "2024-10-14T00:00:00Z" ] ] } diff --git a/catalog/summaries/aquatics/Daily_Chlorophyll_a/models/USGSHABs1.json b/catalog/summaries/aquatics/Daily_Chlorophyll_a/models/USGSHABs1.json index d673670197..69e132095b 100644 --- a/catalog/summaries/aquatics/Daily_Chlorophyll_a/models/USGSHABs1.json +++ b/catalog/summaries/aquatics/Daily_Chlorophyll_a/models/USGSHABs1.json @@ -5,9 +5,7 @@ ], "type": "Feature", "id": "USGSHABs1_chla_P1D_summaries", - "bbox": [ - [-122.6692, 39.6328, -74.7781, 45.5175] - ], + "bbox": [-122.6692, 39.6328, -74.7781, 45.5175], "geometry": { "type": "MultiPoint", "coordinates": [ @@ -26,11 +24,12 @@ "properties": { "title": "USGSHABs1", "description": "All summaries for the Daily_Chlorophyll_a variable for the USGSHABs1 model. Information for the model is provided as follows: Uses the randomForest::randomForest() R package model to train site-specific models for predicting river chl-a. Uses ensemble Kalman filter to adjust predicted chl-a states..\n The model predicts this variable at the following sites: USGS-14211720, USGS-14181500, USGS-05586300, USGS-05558300, USGS-05553700, USGS-05543010, USGS-05549500, USGS-01427510, USGS-14211010, USGS-01463500.\n Summaries are the forecasts statistics of the raw forecasts (i.e., mean, median, confidence intervals)", - "start_datetime": "2024-02-13", - "end_datetime": "2024-08-09", + "datetime": "2024-09-10T00:00:00Z", + "start_datetime": "2024-02-13T00:00:00Z", + "end_datetime": "2024-10-12T00:00:00Z", "providers": [ { - "url": "jzwart@usgs.gov", + "url": "https://code.usgs.gov/wma/proxies/habs/habs-forecast-chl-usgsrc4cast/-/blob/main/2_model/src/chla_models.R?ref_type=heads", "name": "Jacob Zwart", "roles": [ "producer", @@ -181,6 +180,18 @@ "href": "https://code.usgs.gov/wma/proxies/habs/habs-forecast-chl-usgsrc4cast/-/blob/main/2_model/src/chla_models.R?ref_type=heads", "type": "text/html", "title": "Link for Model Code" + }, + { + "rel": "item", + "href": "https://radiantearth.github.io/stac-browser/#/external/raw.githubusercontent.com/eco4cast/usgsrc4cast-ci/main/catalog/summaries/aquatics/Daily_Chlorophyll_a/models/USGSHABs1.json", + "type": "text/html", + "title": "Link for rendered STAC item" + }, + { + "rel": "item", + "href": "https://raw.githubusercontent.com/eco4cast/usgsrc4cast-ci/main/catalog/summaries/aquatics/Daily_Chlorophyll_a/models/USGSHABs1.json", + "type": "text/html", + "title": "Link for raw JSON file" } ], "assets": { @@ -199,8 +210,8 @@ "3": { "type": "application/x-parquet", "title": "Database Access for Daily Chlorophyll_a", - "href": "s3://anonymous@bio230014-bucket01/vera4cast/forecasts/summaries/parquet/project_id=usgsrc4cast/duration=P1D/variable=chla/model_id=USGSHABs1?endpoint_override=sdsc.osn.xsede.org", - "description": "Use `arrow` for remote access to the database. This R code will return results for this variable and model combination.\n\n### R\n\n```{r}\n# Use code below\n\nall_results <- arrow::open_dataset(\"s3://anonymous@bio230014-bucket01/vera4cast/forecasts/summaries/parquet/project_id=usgsrc4cast/duration=P1D/variable=chla/model_id=USGSHABs1?endpoint_override=sdsc.osn.xsede.org\")\ndf <- all_results |> dplyr::collect()\n\n```\n \n\nYou can use dplyr operations before calling `dplyr::collect()` to `summarise`, `select` columns, and/or `filter` rows prior to pulling the data into a local `data.frame`. Reducing the data that is pulled locally will speed up the data download speed and reduce your memory usage.\n\n\n" + "href": "s3://anonymous@bio230014-bucket01/challenges/forecasts/summaries/project_id=usgsrc4cast/duration=P1D/variable=chla/model_id=USGSHABs1?endpoint_override=sdsc.osn.xsede.org", + "description": "Use `arrow` for remote access to the database. This R code will return results for this variable and model combination.\n\n### R\n\n```{r}\n# Use code below\n\nall_results <- arrow::open_dataset(\"s3://anonymous@bio230014-bucket01/challenges/forecasts/summaries/project_id=usgsrc4cast/duration=P1D/variable=chla/model_id=USGSHABs1?endpoint_override=sdsc.osn.xsede.org\")\ndf <- all_results |> dplyr::collect()\n\n```\n \n\nYou can use dplyr operations before calling `dplyr::collect()` to `summarise`, `select` columns, and/or `filter` rows prior to pulling the data into a local `data.frame`. Reducing the data that is pulled locally will speed up the data download speed and reduce your memory usage.\n\n\n" } } } diff --git a/catalog/summaries/aquatics/Daily_Chlorophyll_a/models/climatology.json b/catalog/summaries/aquatics/Daily_Chlorophyll_a/models/climatology.json index 6d458babe7..62697bff90 100644 --- a/catalog/summaries/aquatics/Daily_Chlorophyll_a/models/climatology.json +++ b/catalog/summaries/aquatics/Daily_Chlorophyll_a/models/climatology.json @@ -5,32 +5,31 @@ ], "type": "Feature", "id": "climatology_chla_P1D_summaries", - "bbox": [ - [-122.6692, 39.6328, -74.7781, 45.5175] - ], + "bbox": [-122.6692, 39.6328, -74.7781, 45.5175], "geometry": { "type": "MultiPoint", "coordinates": [ + [-75.0574, 41.7567], + [-74.7781, 40.2217], + [-88.6142, 41.2999], [-88.2515, 42.31], [-88.984, 41.3248], [-89.3562, 41.1073], [-90.6077, 39.6328], [-122.2974, 44.7538], [-122.5773, 45.3793], - [-122.6692, 45.5175], - [-75.0574, 41.7567], - [-74.7781, 40.2217], - [-88.6142, 41.2999] + [-122.6692, 45.5175] ] }, "properties": { "title": "climatology", - "description": "All summaries for the Daily_Chlorophyll_a variable for the climatology model. Information for the model is provided as follows: Forecasts stream chlorophyll-a based on the historic average and standard deviation for that given site and day-of-year..\n The model predicts this variable at the following sites: USGS-05549500, USGS-05553700, USGS-05558300, USGS-05586300, USGS-14181500, USGS-14211010, USGS-14211720, USGS-01427510, USGS-01463500, USGS-05543010.\n Summaries are the forecasts statistics of the raw forecasts (i.e., mean, median, confidence intervals)", - "start_datetime": "2024-02-07", - "end_datetime": "2024-08-11", + "description": "All summaries for the Daily_Chlorophyll_a variable for the climatology model. Information for the model is provided as follows: Forecasts stream chlorophyll-a based on the historic average and standard deviation for that given site and day-of-year..\n The model predicts this variable at the following sites: USGS-01427510, USGS-01463500, USGS-05543010, USGS-05549500, USGS-05553700, USGS-05558300, USGS-05586300, USGS-14181500, USGS-14211010, USGS-14211720.\n Summaries are the forecasts statistics of the raw forecasts (i.e., mean, median, confidence intervals)", + "datetime": "2024-09-10T00:00:00Z", + "start_datetime": "2024-02-07T00:00:00Z", + "end_datetime": "2024-10-14T00:00:00Z", "providers": [ { - "url": "jzwart@usgs.gov", + "url": "https://github.com/eco4cast/usgsrc4cast-ci/blob/main/baseline_models/models/aquatics_climatology.R", "name": "Jacob Zwart", "roles": [ "producer", @@ -56,16 +55,16 @@ "chla", "Daily", "P1D", + "USGS-01427510", + "USGS-01463500", + "USGS-05543010", "USGS-05549500", "USGS-05553700", "USGS-05558300", "USGS-05586300", "USGS-14181500", "USGS-14211010", - "USGS-14211720", - "USGS-01427510", - "USGS-01463500", - "USGS-05543010" + "USGS-14211720" ], "table:columns": [ { @@ -181,6 +180,18 @@ "href": "https://github.com/eco4cast/usgsrc4cast-ci/blob/main/baseline_models/models/aquatics_climatology.R", "type": "text/html", "title": "Link for Model Code" + }, + { + "rel": "item", + "href": "https://radiantearth.github.io/stac-browser/#/external/raw.githubusercontent.com/eco4cast/usgsrc4cast-ci/main/catalog/summaries/aquatics/Daily_Chlorophyll_a/models/climatology.json", + "type": "text/html", + "title": "Link for rendered STAC item" + }, + { + "rel": "item", + "href": "https://raw.githubusercontent.com/eco4cast/usgsrc4cast-ci/main/catalog/summaries/aquatics/Daily_Chlorophyll_a/models/climatology.json", + "type": "text/html", + "title": "Link for raw JSON file" } ], "assets": { @@ -199,8 +210,8 @@ "3": { "type": "application/x-parquet", "title": "Database Access for Daily Chlorophyll_a", - "href": "s3://anonymous@bio230014-bucket01/vera4cast/forecasts/summaries/parquet/project_id=usgsrc4cast/duration=P1D/variable=chla/model_id=climatology?endpoint_override=sdsc.osn.xsede.org", - "description": "Use `arrow` for remote access to the database. This R code will return results for this variable and model combination.\n\n### R\n\n```{r}\n# Use code below\n\nall_results <- arrow::open_dataset(\"s3://anonymous@bio230014-bucket01/vera4cast/forecasts/summaries/parquet/project_id=usgsrc4cast/duration=P1D/variable=chla/model_id=climatology?endpoint_override=sdsc.osn.xsede.org\")\ndf <- all_results |> dplyr::collect()\n\n```\n \n\nYou can use dplyr operations before calling `dplyr::collect()` to `summarise`, `select` columns, and/or `filter` rows prior to pulling the data into a local `data.frame`. Reducing the data that is pulled locally will speed up the data download speed and reduce your memory usage.\n\n\n" + "href": "s3://anonymous@bio230014-bucket01/challenges/forecasts/summaries/project_id=usgsrc4cast/duration=P1D/variable=chla/model_id=climatology?endpoint_override=sdsc.osn.xsede.org", + "description": "Use `arrow` for remote access to the database. This R code will return results for this variable and model combination.\n\n### R\n\n```{r}\n# Use code below\n\nall_results <- arrow::open_dataset(\"s3://anonymous@bio230014-bucket01/challenges/forecasts/summaries/project_id=usgsrc4cast/duration=P1D/variable=chla/model_id=climatology?endpoint_override=sdsc.osn.xsede.org\")\ndf <- all_results |> dplyr::collect()\n\n```\n \n\nYou can use dplyr operations before calling `dplyr::collect()` to `summarise`, `select` columns, and/or `filter` rows prior to pulling the data into a local `data.frame`. Reducing the data that is pulled locally will speed up the data download speed and reduce your memory usage.\n\n\n" } } } diff --git a/catalog/summaries/aquatics/Daily_Chlorophyll_a/models/persistenceRW.json b/catalog/summaries/aquatics/Daily_Chlorophyll_a/models/persistenceRW.json index d2b79924a6..9cc60da2e1 100644 --- a/catalog/summaries/aquatics/Daily_Chlorophyll_a/models/persistenceRW.json +++ b/catalog/summaries/aquatics/Daily_Chlorophyll_a/models/persistenceRW.json @@ -5,32 +5,31 @@ ], "type": "Feature", "id": "persistenceRW_chla_P1D_summaries", - "bbox": [ - [-122.6692, 39.6328, -74.7781, 45.5175] - ], + "bbox": [-122.6692, 39.6328, -74.7781, 45.5175], "geometry": { "type": "MultiPoint", "coordinates": [ + [-122.2974, 44.7538], + [-122.5773, 45.3793], + [-122.6692, 45.5175], [-75.0574, 41.7567], [-74.7781, 40.2217], [-88.6142, 41.2999], [-88.2515, 42.31], [-88.984, 41.3248], [-89.3562, 41.1073], - [-90.6077, 39.6328], - [-122.2974, 44.7538], - [-122.5773, 45.3793], - [-122.6692, 45.5175] + [-90.6077, 39.6328] ] }, "properties": { "title": "persistenceRW", - "description": "All summaries for the Daily_Chlorophyll_a variable for the persistenceRW model. Information for the model is provided as follows: Random walk model based on most recent stream chl-a observations using the fable::RW() model..\n The model predicts this variable at the following sites: USGS-01427510, USGS-01463500, USGS-05543010, USGS-05549500, USGS-05553700, USGS-05558300, USGS-05586300, USGS-14181500, USGS-14211010, USGS-14211720.\n Summaries are the forecasts statistics of the raw forecasts (i.e., mean, median, confidence intervals)", - "start_datetime": "2024-02-07", - "end_datetime": "2024-08-10", + "description": "All summaries for the Daily_Chlorophyll_a variable for the persistenceRW model. Information for the model is provided as follows: Random walk model based on most recent stream chl-a observations using the fable::RW() model..\n The model predicts this variable at the following sites: USGS-14181500, USGS-14211010, USGS-14211720, USGS-01427510, USGS-01463500, USGS-05543010, USGS-05549500, USGS-05553700, USGS-05558300, USGS-05586300.\n Summaries are the forecasts statistics of the raw forecasts (i.e., mean, median, confidence intervals)", + "datetime": "2024-09-10T00:00:00Z", + "start_datetime": "2024-02-07T00:00:00Z", + "end_datetime": "2024-10-13T00:00:00Z", "providers": [ { - "url": "jzwart@usgs.gov", + "url": "https://github.com/eco4cast/usgsrc4cast-ci/blob/main/baseline_models/models/aquatics_persistenceRW.R", "name": "Jacob Zwart", "roles": [ "producer", @@ -56,16 +55,16 @@ "chla", "Daily", "P1D", + "USGS-14181500", + "USGS-14211010", + "USGS-14211720", "USGS-01427510", "USGS-01463500", "USGS-05543010", "USGS-05549500", "USGS-05553700", "USGS-05558300", - "USGS-05586300", - "USGS-14181500", - "USGS-14211010", - "USGS-14211720" + "USGS-05586300" ], "table:columns": [ { @@ -181,6 +180,18 @@ "href": "https://github.com/eco4cast/usgsrc4cast-ci/blob/main/baseline_models/models/aquatics_persistenceRW.R", "type": "text/html", "title": "Link for Model Code" + }, + { + "rel": "item", + "href": "https://radiantearth.github.io/stac-browser/#/external/raw.githubusercontent.com/eco4cast/usgsrc4cast-ci/main/catalog/summaries/aquatics/Daily_Chlorophyll_a/models/persistenceRW.json", + "type": "text/html", + "title": "Link for rendered STAC item" + }, + { + "rel": "item", + "href": "https://raw.githubusercontent.com/eco4cast/usgsrc4cast-ci/main/catalog/summaries/aquatics/Daily_Chlorophyll_a/models/persistenceRW.json", + "type": "text/html", + "title": "Link for raw JSON file" } ], "assets": { @@ -199,8 +210,8 @@ "3": { "type": "application/x-parquet", "title": "Database Access for Daily Chlorophyll_a", - "href": "s3://anonymous@bio230014-bucket01/vera4cast/forecasts/summaries/parquet/project_id=usgsrc4cast/duration=P1D/variable=chla/model_id=persistenceRW?endpoint_override=sdsc.osn.xsede.org", - "description": "Use `arrow` for remote access to the database. This R code will return results for this variable and model combination.\n\n### R\n\n```{r}\n# Use code below\n\nall_results <- arrow::open_dataset(\"s3://anonymous@bio230014-bucket01/vera4cast/forecasts/summaries/parquet/project_id=usgsrc4cast/duration=P1D/variable=chla/model_id=persistenceRW?endpoint_override=sdsc.osn.xsede.org\")\ndf <- all_results |> dplyr::collect()\n\n```\n \n\nYou can use dplyr operations before calling `dplyr::collect()` to `summarise`, `select` columns, and/or `filter` rows prior to pulling the data into a local `data.frame`. Reducing the data that is pulled locally will speed up the data download speed and reduce your memory usage.\n\n\n" + "href": "s3://anonymous@bio230014-bucket01/challenges/forecasts/summaries/project_id=usgsrc4cast/duration=P1D/variable=chla/model_id=persistenceRW?endpoint_override=sdsc.osn.xsede.org", + "description": "Use `arrow` for remote access to the database. This R code will return results for this variable and model combination.\n\n### R\n\n```{r}\n# Use code below\n\nall_results <- arrow::open_dataset(\"s3://anonymous@bio230014-bucket01/challenges/forecasts/summaries/project_id=usgsrc4cast/duration=P1D/variable=chla/model_id=persistenceRW?endpoint_override=sdsc.osn.xsede.org\")\ndf <- all_results |> dplyr::collect()\n\n```\n \n\nYou can use dplyr operations before calling `dplyr::collect()` to `summarise`, `select` columns, and/or `filter` rows prior to pulling the data into a local `data.frame`. Reducing the data that is pulled locally will speed up the data download speed and reduce your memory usage.\n\n\n" } } } diff --git a/catalog/summaries/aquatics/collection.json b/catalog/summaries/aquatics/collection.json index a9b131fa09..a3c84f87a2 100644 --- a/catalog/summaries/aquatics/collection.json +++ b/catalog/summaries/aquatics/collection.json @@ -5,12 +5,11 @@ "license": "CC0-1.0", "stac_extensions": [ "https://stac-extensions.github.io/scientific/v1.0.0/schema.json", - "https://stac-extensions.github.io/item-assets/v1.0.0/schema.json", "https://stac-extensions.github.io/table/v1.2.0/schema.json" ], "type": "Collection", "sci:doi": "10.1002/fee.2616", - "sci:publications": {}, + "sci:publications": [null], "links": [ { "rel": "child", @@ -60,7 +59,7 @@ "interval": [ [ "2024-02-07T00:00:00Z", - "2024-08-11T00:00:00Z" + "2024-10-14T00:00:00Z" ] ] } diff --git a/catalog/summaries/collection.json b/catalog/summaries/collection.json index dd51a92cec..2429a3965c 100644 --- a/catalog/summaries/collection.json +++ b/catalog/summaries/collection.json @@ -4,8 +4,6 @@ "stac_version": "1.0.0", "license": "CC0-1.0", "stac_extensions": [ - "https://stac-extensions.github.io/scientific/v1.0.0/schema.json", - "https://stac-extensions.github.io/item-assets/v1.0.0/schema.json", "https://stac-extensions.github.io/table/v1.2.0/schema.json" ], "type": "Collection", @@ -59,7 +57,7 @@ "interval": [ [ "2024-02-07T00:00:00Z", - "2024-08-11T00:00:00Z" + "2024-10-14T00:00:00Z" ] ] } @@ -148,13 +146,13 @@ ], "assets": { "data": { - "href": "s3://anonymous@bio230014-bucket01/vera4cast/forecasts/summaries/parquet/?endpoint_override=sdsc.osn.xsede.org", + "href": "s3://anonymous@bio230014-bucket01/challenges/forecasts/summaries/?endpoint_override=sdsc.osn.xsede.org", "type": "application/x-parquet", "title": "Database Access", "roles": [ "data" ], - "description": "Use `arrow` for remote access to the database. This R code will return results for the Forecasting Challenge.\n\n### R\n\n```{r}\n# Use code below\n\nall_results <- arrow::open_dataset(\"s3://anonymous@bio230014-bucket01/vera4cast/forecasts/summaries/parquet/?endpoint_override=sdsc.osn.xsede.org\")\ndf <- all_results |> dplyr::collect()\n\n```\n \n\nYou can use dplyr operations before calling `dplyr::collect()` to `summarise`, `select` columns, and/or `filter` rows prior to pulling the data into a local `data.frame`. Reducing the data that is pulled locally will speed up the data download speed and reduce your memory usage.\n\n\n" + "description": "Use `arrow` for remote access to the database. This R code will return results for the Forecasting Challenge.\n\n### R\n\n```{r}\n# Use code below\n\nall_results <- arrow::open_dataset(\"s3://anonymous@bio230014-bucket01/challenges/forecasts/summaries/?endpoint_override=sdsc.osn.xsede.org\")\ndf <- all_results |> dplyr::collect()\n\n```\n \n\nYou can use dplyr operations before calling `dplyr::collect()` to `summarise`, `select` columns, and/or `filter` rows prior to pulling the data into a local `data.frame`. Reducing the data that is pulled locally will speed up the data download speed and reduce your memory usage.\n\n\n" }, "thumbnail": { "href": "https://d9-wret.s3.us-west-2.amazonaws.com/assets/palladium/production/s3fs-public/thumbnails/image/Manual%20measurement%20streamgage.jpg", diff --git a/catalog/targets/collection.json b/catalog/targets/collection.json index 1237f7a54f..27d07e8ec5 100644 --- a/catalog/targets/collection.json +++ b/catalog/targets/collection.json @@ -58,7 +58,7 @@ "interval": [ [ "2009-01-22T00:00:00Z", - "2024-07-08T00:00:00Z" + "2024-09-10T00:00:00Z" ] ] }