From 8d5c7c387d8c2f8fce2ba2aa756224f369730ed2 Mon Sep 17 00:00:00 2001
From: rqthomas <rqthomas@vt.edu>
Date: Wed, 1 Nov 2023 15:40:48 -0400
Subject: [PATCH] fixing phenology

---
 .github/workflows/targets.yaml | 21 +++++++++++++++++++--
 targets/phenology_targets.R    |  6 ------
 2 files changed, 19 insertions(+), 8 deletions(-)

diff --git a/.github/workflows/targets.yaml b/.github/workflows/targets.yaml
index 53b4d47b53..491a6e5299 100644
--- a/.github/workflows/targets.yaml
+++ b/.github/workflows/targets.yaml
@@ -9,7 +9,7 @@ on:
 name: target-generation
 
 jobs:
-  targets:
+  phenology:
     runs-on: ubuntu-latest
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
@@ -24,4 +24,21 @@ jobs:
       - name: Generate targets
         shell: Rscript {0}
         run: |
-          source("targets/generate_daily_targets.R")
+          source("targets/phenology_targets")
+
+  beetles:
+    runs-on: ubuntu-latest
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY_SUBMISSIONS }}
+      AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY_SUBMISSIONS }}
+      OSN_KEY: ${{ secrets.OSN_KEY }}
+      OSN_SECRET: ${{ secrets.OSN_SECRET }}
+    container: rocker/geospatial:latest
+    steps:
+      - uses: actions/checkout@v3
+
+      - name: Generate targets
+        shell: Rscript {0}
+        run: |
+          source("targets/beetles_targets")
diff --git a/targets/phenology_targets.R b/targets/phenology_targets.R
index 85a8e22dd2..b66b01151d 100644
--- a/targets/phenology_targets.R
+++ b/targets/phenology_targets.R
@@ -64,12 +64,6 @@ allData2 <- allData2 |>
   select("time", "site_id", "variable", "observation") |>
   rename(datetime = time)
 
-readr::write_csv(allData2, "phenology-targets.csv.gz")
-
-aws.s3::put_object(file = "phenology-targets.csv.gz",
-                   object = "phenology/phenology-targets.csv.gz",
-                   bucket = "neon4cast-targets")
-
 s3 <- arrow::s3_bucket("neon4cast-targets/phenology",
                               endpoint_override = "data.ecoforecast.org",
                               access_key = Sys.getenv("AWS_ACCESS_KEY_SUBMISSIONS"),