diff --git a/.github/workflows/catalog.yaml b/.github/workflows/catalog.yaml index 2e9714f9c6..d2b0c0bd77 100644 --- a/.github/workflows/catalog.yaml +++ b/.github/workflows/catalog.yaml @@ -22,14 +22,6 @@ jobs: fetch-depth: 0 set-safe-directory: '*' - - name: install deps - shell: Rscript {0} - run: | - remotes::install_deps(".", dep=TRUE) - install.packages("bench") - install.packages("aws.s3") - #reticulate::install_python(version = '3.11.5') - - name: install validator run: | pip install stac-validator diff --git a/.github/workflows/combined.yaml b/.github/workflows/combined.yaml index 008ff6969a..fc807ab7e9 100644 --- a/.github/workflows/combined.yaml +++ b/.github/workflows/combined.yaml @@ -64,14 +64,6 @@ jobs: fetch-depth: 0 set-safe-directory: '*' - - name: install deps - shell: Rscript {0} - run: | - remotes::install_deps(".", dep=TRUE) - install.packages("bench") - install.packages("aws.s3") - #reticulate::install_python(version = '3.11.5') - - name: install validator run: | pip install stac-validator diff --git a/Dockerfile b/Dockerfile index 98cecde3df..774744b256 100644 --- a/Dockerfile +++ b/Dockerfile @@ -18,13 +18,13 @@ RUN apt-get update && apt-get -y install libnetcdf-dev #USER ${NB_USER} - - RUN install2.r devtools remotes reticulate -RUN R -e "remotes::install_github(c('cboettig/minioclient','eco4cast/EFIstandards','cboettig/aws.s3','rqthomas/cronR','eco4cast/score4cast','EcoForecast/ecoforecastR','eco4cast/neon4cast','cboettig/prov', 'eco4cast/read4cast','eco4cast/gefs4cast'))" +RUN R -e "remotes::install_github(c('cboettig/minioclient','eco4cast/stac4cast', 'eco4cast/EFIstandards','cboettig/aws.s3','rqthomas/cronR','eco4cast/score4cast','EcoForecast/ecoforecastR','eco4cast/neon4cast','cboettig/prov', 'eco4cast/read4cast','eco4cast/gefs4cast'))" + +RUN install2.r arrow renv rjags neonstore ISOweek RNetCDF fable fabletools forecast imputeTS duckdbfs gsheet -RUN install2.r arrow renv rjags neonstore ISOweek RNetCDF fable fabletools forecast imputeTS ncdf4 scoringRules tidybayes tidync udunits2 bench contentid yaml RCurl here feasts future furrr +RUN install2.r ncdf4 scoringRules tidybayes tidync udunits2 bench contentid yaml RCurl here feasts future furrr jsonlite RUN R -e "reticulate::install_python(version = '3.9:latest', list = FALSE, force = FALSE)"