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BSMBC-Idealization-2024

Code for simulating single channel recordings and idealizing them with ASCAM code

  1. Clone this repository
  2. Clone ASCAM and follow the desctiption to get it running.
  3. src/processSimulationData.py --traceFile data/example/traces/current-trace-samplerate40000-SNR2_0.npy --gaussFilter 5000
  4. src/simulate-trace.py --dataDir data/example --conductancesFilename conductances.npy --QFilename Q.npy --duration 2 --initialState 14 --SNR 2 --samplerate 40000
  5. src/testDISC.py --BIC_method full --outdir data/example --alpha 1e-6

Now you can open the jupyter notebook and examine the results of the simulation and idealization.