From 1878c165e056a4c786fdf2071fb429e9a113eb7e Mon Sep 17 00:00:00 2001 From: Pedro Madrigal <8195212+pmb59@users.noreply.github.com> Date: Wed, 15 May 2024 10:33:47 +0100 Subject: [PATCH 01/13] Update sdrfToNfConf.R --- bin/sdrfToNfConf.R | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/bin/sdrfToNfConf.R b/bin/sdrfToNfConf.R index 2c24fa1..94db89c 100755 --- a/bin/sdrfToNfConf.R +++ b/bin/sdrfToNfConf.R @@ -162,7 +162,7 @@ for ( n in names(opt) ) { } ################################################################################ -# First round SDRF field checks: before we know about field content +# First round SDRF field checks: before we know about field content ################################################################################ # Load the SDRF From 46cc6c006afdb0f018ba3c6d829a40d71727fb34 Mon Sep 17 00:00:00 2001 From: Pedro Madrigal Date: Fri, 17 May 2024 14:16:02 +0100 Subject: [PATCH 02/13] fix value of 'missing_uri_files', when 'uri_select' is not a data.frame or matrix --- bin/sdrfToNfConf.R | 2 +- bin/utils.R | 8 ++++---- 2 files changed, 5 insertions(+), 5 deletions(-) diff --git a/bin/sdrfToNfConf.R b/bin/sdrfToNfConf.R index 94db89c..e27ff35 100755 --- a/bin/sdrfToNfConf.R +++ b/bin/sdrfToNfConf.R @@ -1084,7 +1084,7 @@ configs <- lapply(species_list, function(species){ # if not a matrix or a data.frame missing_uri_files <- files[which(! apply(apply(species.protocol.sdrf[,uri_cols], 2, function(x) basename(x) == files), 1, any))] } else { - missing_uri_files <- files[which(! apply(as.data.frame( apply(species.protocol.sdrf[,uri_cols], 2, function(x) basename(x) == files) ), 1, any))] + missing_uri_files <- files[which(! any(apply(species.protocol.sdrf[, uri_cols], 2, function(x) basename(x) == files)) )] } if (length(missing_uri_files) > 0){ diff --git a/bin/utils.R b/bin/utils.R index 861c877..59a78f2 100644 --- a/bin/utils.R +++ b/bin/utils.R @@ -1,5 +1,5 @@ pinfo <- function(...) { - cat(paste0("[INFO ",format(Sys.time(), format="%d/%m-%H:%M"),"] ",...,"\n")) + cat(paste0("[INFO ", format(Sys.time(), format="%d/%m-%H:%M"),"] ",...,"\n")) } perror <- function(...) { @@ -10,14 +10,14 @@ pwarning <- function(...) { cat(paste0("[WARNING] ",...,"\n"),file=stderr()) } -read.tsv <- function(f,header=TRUE, comment.char="", nrows=-1L,fill=FALSE, quote="\"", colClasses=NULL, drop=NULL) { +read.tsv <- function(f, header=TRUE, comment.char="", nrows=-1L,fill=FALSE, quote="\"", colClasses=NULL, drop=NULL) { tsv.data <- NULL suppressPackageStartupMessages(require(data.table)) - fread(input=f,sep = "\t", nrows=nrows, header=header,check.names=FALSE,data.table=FALSE,fill=fill,drop=drop, quote=quote,colClasses=colClasses) + fread(input=f, sep = "\t", nrows=nrows, header=header, check.names=FALSE,data.table=FALSE, fill=fill, drop=drop, quote=quote, colClasses=colClasses) } write.tsv <- function(x, file, header=TRUE){ fwrite(x,file=file,sep="\t",row.names=FALSE,col.names=header,quote=FALSE,verbose=FALSE) -} +} \ No newline at end of file From 5bf6d5c29a33961dc6f33968368a063ec611f712 Mon Sep 17 00:00:00 2001 From: Pedro Madrigal Date: Fri, 17 May 2024 14:27:08 +0100 Subject: [PATCH 03/13] rm blank space --- bin/sdrfToNfConf.R | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/bin/sdrfToNfConf.R b/bin/sdrfToNfConf.R index e27ff35..0b1e01d 100755 --- a/bin/sdrfToNfConf.R +++ b/bin/sdrfToNfConf.R @@ -1077,7 +1077,7 @@ configs <- lapply(species_list, function(species){ }else{ # For each library we check if there is a fastq URI that can supply the file - uri_select <- apply(species.protocol.sdrf[,uri_cols], 2, function(x) basename(x) == files) + uri_select <- apply(species.protocol.sdrf[,uri_cols], 2, function(x) basename(x) == files) if (is.data.frame(uri_select) || is.matrix(uri_select)) { # the following line gives an error: dim(X) must have a positive length From b06765b5a5316873e27dbff8b567c02f412f23a9 Mon Sep 17 00:00:00 2001 From: Pedro Madrigal Date: Fri, 17 May 2024 19:04:00 +0100 Subject: [PATCH 04/13] add R script check GitHub Action --- .github/workflows/sdrfToNfConf_test.yml | 32 ++ tests/E-MTAB-4850.homo_sapiens.idf.txt | 72 ++++ tests/E-MTAB-4850.homo_sapiens.sdrf.txt | 505 ++++++++++++++++++++++++ 3 files changed, 609 insertions(+) create mode 100644 .github/workflows/sdrfToNfConf_test.yml create mode 100644 tests/E-MTAB-4850.homo_sapiens.idf.txt create mode 100644 tests/E-MTAB-4850.homo_sapiens.sdrf.txt diff --git a/.github/workflows/sdrfToNfConf_test.yml b/.github/workflows/sdrfToNfConf_test.yml new file mode 100644 index 0000000..fc1c3bd --- /dev/null +++ b/.github/workflows/sdrfToNfConf_test.yml @@ -0,0 +1,32 @@ +name: R script check + +on: + push: + branches: + - develop + pull_request: + branches: + - develop + +jobs: + run_script: + runs-on: ubuntu-latest + steps: + - name: checkout code + uses: actions/checkout@v2 + + - name: set up R + uses: r-lib/actions/setup-r@v1 + + - name: install dependencies + run: | + Rscript -e 'install.packages(c("data.table", "optparse", "devtools"), repos="https://cran.rstudio.com")' + Rscript -e 'devtools::install_github('https://github.com/ebi-gene-expression-group/workflowscriptscommon', ref='develop')' + - name: run test + run: | + set -e + out_test1=$(pwd)/test1 + Rscript bin/sdrfToNfConf.R --sdrf=tests/E-MTAB-4850.homo_sapiens.sdrf.txt --idf=tests/E-MTAB-4850.homo_sapiens.idf.txt --name=E-MTAB-4850 --verbose --out_conf $out_test1 + + - name: check for errors + run: Rscript -e 'stopifnot(identical(geterrmessage(), ""))' diff --git a/tests/E-MTAB-4850.homo_sapiens.idf.txt b/tests/E-MTAB-4850.homo_sapiens.idf.txt new file mode 100644 index 0000000..fd6517b --- /dev/null +++ b/tests/E-MTAB-4850.homo_sapiens.idf.txt @@ -0,0 +1,72 @@ +MAGE-TAB Version 1.1 +Investigation Title Transcriptomic profiling of antigen-specific T cells at the single-cell level after clearance of hepatitis C virus + +Experimental Design pathogenicity design stimulus or stress design +Experimental Design Term Source REF EFO EFO +Experimental Design Term Accession Number EFO_0001761 EFO_0001762 + +Experimental Factor Name stimulus cell line single cell identifier +Experimental Factor Type stimulus cell line single cell identifier +Experimental Factor Term Source REF EFO +Experimental Factor Term Accession Number + +Person Last Name Luciani Rizzetto Eltahla +Person First Name Fabio Simone Auda +Person Mid Initials A +Person Email luciani@unsw.edu.au s.rizzetto@unsw.edu.au +Person Phone +Person Fax +Person Affiliation Systems Medicine in Infectious Diseases, Inflammation and Infection Research Centre, School of Medical Sciences, University of New South Wales, Sydney, Australia Systems Medicine in Infectious Diseases, Inflammation and Infection Research Centre, School of Medical Sciences, University of New South Wales, Sydney, Australia Systems Medicine in Infectious Diseases, Infl ammation and Infection Research Centre, School of Medical Sciences, University of New South Wales, Sydney, Australia +Person Address +Person Roles investigator data analyst;submitter experiment performer +Person Roles Term Source REF +Person Roles Term Accession Number + +Quality Control Type +Quality Control Term Source REF +Quality Control Term Accession Number + +Replicate Type +Replicate Term Source REF +Replicate Term Accession Number + +Normalization Type +Normalization Term Source REF +Normalization Term Accession Number + +Date of Experiment 2015-06-26 +Public Release Date 2017-01-31 + +PubMed ID 26860370 +Publication DOI 10.1038/icb.2016.16 +Publication Author List Auda A Eltahla, Simone Rizzetto, Mehdi R Pirozyan, Brigid D Betz-Stablein, Vanessa Venturi, Katherine Kedzierska, Andrew R Lloyd, Rowena A Bull and Fabio Luciani +Publication Title Linking the T cell receptor to the single cell transcriptome in antigen-specific human T cells +Publication Status published +Publication Status Term Source REF +Publication Status Term Accession Number + +Experiment Description We used scRNA-seq data generated using Smart-seq2 to reconstruct the native TCR from Ag-specific T cells and then to link these with the gene expression profile of individual cells. antigen specific CD8 T cells were obtained from a subject who had previously cleared hepatitis C virus (HCV) infection. A cell line was also generated from the same subject and included in the analysis with and without antigen stimulation. + +Protocol Name P-MTAB-50510 P-MTAB-51259 P-MTAB-50511 P-MTAB-50508 +Protocol Type nucleic acid library construction protocol growth protocol nucleic acid sequencing protocol sample collection protocol +Protocol Term Source REF EFO EFO EFO EFO +Protocol Term Accession Number EFO_0004184 EFO_0003789 EFO_0004170 EFO_0005518 +Protocol Description Single cell RNA sequencing was performed using Smart-seq2 as described by Picelli et al. (Picelli et al. Nature methods 2013) with the following modifications. Cell lysis buffer was prepared by adding 1 lRNase inhibitor (Clontech, Mountain View, CA) to 19 lTriton X-100 solution (0.2% v/v). Cells were sorted directly into tube containing 2 ul lysis buffer, 1 ul dNTP mix (10mM) and 1 ul oligo-dT primer at 5 M. Tubes were stored at -80 C until needed. Reverse-transcription and PCR amplification were performed as described with the exception of reducing the IS PCR primer to a 50 nM final concentration and increasing the number of cycles to 28. Sequencing libraries were prepared using the Nextera XT Library Preparation Kit (Illumina; San Diego, CA, USA) and sequencing was performed on Illumina MiSeq and NextSeq sequencing platforms. PBMC were separated from freshly collected whole blood by density gradient centrifugation, before 4 10^5 cells per well were cultured in medium (AIM-V with 1% Glutamax, 1% Penicillin-Streptomycin) supplemented with 10% heat inactivated human AB serum (Sigma, USA) in 96-well U-bottomed plates in presence of 10 g ml 1 of the CINGVCWTV peptide (aa 10731081 of HCV non-structural 3 protein). For the initial culture, the cytokines, IL-7 (10 ng ml 1, Miltenyi Biotec), IL-12 (300 g ml 1, Miltenyi Biotec) and IL-15 (10 ng ml 1, Miltenyi Biotec) were added. Fresh AIM-V media and IL-2 (20 U ml 1, Miltenyi Biotec) was added to the wells on days 4 and 7 post-stimulation. On day 10 post-stimulation, cells were re-stimulated with irradiated autologous monocytes supplemented with IL-2, IL-7, IL-12 and IL-15 in same concentrations as stated for day 1. On day 14 and 17 fresh AIM-V media containing IL-2 (U ml 1) was added to the wells. The established cell line was harvested at day 20 and cryopreserved in RPMI with 20% DMSO. Re-stimulation of the cell line was performed with 10 g ml 1 of the CINGVCWTV peptide per well (2 x 10^5 cells in each well) for 24 h. Single cells were isolated from cell lines by flow cytometry NextSeq HCV-specific CD8+ T cells were stained with NS31073-Dextramer (Immudex; Copenhagen, Denmark). Live/Dead fixable blue dye (Invitrogen) was used to exclude non-viable cells from the analysis. Subsequently, cells were washed and surface stained with the following monoclonal antibodies (mAbs): CD3-APC- Cy7, CD8-Alexa Fluor700 and CD19-PE-Cy5 (BD Biosciences). After the final wash the cells were resuspended in 500 l of PBS, 2mM EDTA and 0.5% BSA (Sigma-Aldrich, Germany) solution kept in dark at 4 C until data acquisition. After exclusion of non-viable/CD19+ cells, CD3+ CD8+ dextramer+ cells were sorted directly into 96-well PCR plates (Eppendorf) using a BD Influx cell sorter (BD Influx; BD Biosciences, Franklin Lakes, NJ) and stored at 80 oC for subsequent TCR analysis. +Protocol Parameters +Protocol Hardware NextSeq 500 +Protocol Software +Protocol Contact + +Term Source Name EFO ArrayExpress +Term Source File http://www.ebi.ac.uk/efo/ http://www.ebi.ac.uk/arrayexpress/ +Term Source Version 2.38 + +SDRF File E-MTAB-4850.homo_sapiens.sdrf.txt +Comment [Submitted Name] Transcriptomic profiling of antigen-specific T cells at the single-cell level after clearance of hepatitis C virus +Comment [SecondaryAccession] ERP020994 +Comment [SequenceDataURI] http://www.ebi.ac.uk/ena/data/view/ERR1797277-ERR1797528 +Comment [AEExperimentType] RNA-seq of coding RNA from single cells +Comment[ArrayExpressAccession] E-MTAB-4850 +Comment[EAExpectedClusters] 2 +Comment[EAExperimentType] differential +Comment[EACurator] Silvie Fexova diff --git a/tests/E-MTAB-4850.homo_sapiens.sdrf.txt b/tests/E-MTAB-4850.homo_sapiens.sdrf.txt new file mode 100644 index 0000000..f555335 --- /dev/null +++ b/tests/E-MTAB-4850.homo_sapiens.sdrf.txt @@ -0,0 +1,505 @@ +Source Name Comment[ENA_SAMPLE] Comment[BioSD_SAMPLE] Characteristics[organism] Characteristics[disease] Characteristics[disease staging] Characteristics[age] Unit[time unit] Characteristics[sex] Characteristics[organism part] Characteristics[cell type] Characteristics[cell line] Characteristics[single cell well quality] Comment[single cell quality] Material Type Protocol REF Protocol REF Extract Name Comment[LIBRARY_LAYOUT] Comment[LIBRARY_SELECTION] Comment[LIBRARY_SOURCE] Comment[LIBRARY_STRAND] Comment[LIBRARY_STRATEGY] Comment[NOMINAL_LENGTH] Comment[NOMINAL_SDEV] Comment[ORIENTATION] Comment[single cell isolation] Comment[library construction] Comment[input molecule] Comment[primer] Comment[end bias] Protocol REF Performer Assay Name Comment[technical replicate group] Technology Type Comment[ENA_EXPERIMENT] Scan Name Comment[SUBMITTED_FILE_NAME] Comment[ENA_RUN] Comment[FASTQ_URI] Comment[SPOT_LENGTH] Comment[READ_INDEX_1_BASE_COORD] Factor value[cell line] Factor Value[stimulus] Factor Value[single cell identifier] +PB-T cell 1 ERS1505430 SAMEA50486668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 1 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 1 SAMEA50486668 sequencing assay ERX1861007 PBMC-single1_S41_L001_R1_001.fastq.gz PBMC-single1_S41_L001_R1_001.fastq.gz ERR1797277 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797277/ERR1797277_1.fastq.gz 252 127 primary cell none PB-T cell 1 +PB-T cell 1 ERS1505430 SAMEA50486668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 1 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 1 SAMEA50486668 sequencing assay ERX1861007 PBMC-single1_S41_L001_R2_001.fastq.gz PBMC-single1_S41_L001_R2_001.fastq.gz ERR1797277 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797277/ERR1797277_2.fastq.gz 302 152 primary cell none PB-T cell 1 +PB-T cell 1 ERS1505430 SAMEA50486668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 1 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 1 SAMEA50486668 sequencing assay ERX1861007 PBMC-single1_S41_L002_R1_001.fastq.gz PBMC-single1_S41_L002_R1_001.fastq.gz ERR1797278 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797278/ERR1797278_1.fastq.gz 226 114 primary cell none PB-T cell 1 +PB-T cell 1 ERS1505430 SAMEA50486668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 1 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 1 SAMEA50486668 sequencing assay ERX1861007 PBMC-single1_S41_L002_R2_001.fastq.gz PBMC-single1_S41_L002_R2_001.fastq.gz ERR1797278 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797278/ERR1797278_2.fastq.gz 302 152 primary cell none PB-T cell 1 +PB-T cell 1 ERS1505430 SAMEA50486668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 1 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 1 SAMEA50486668 sequencing assay ERX1861007 PBMC-single1_S41_L003_R1_001.fastq.gz PBMC-single1_S41_L003_R1_001.fastq.gz ERR1797279 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797279/ERR1797279_1.fastq.gz 302 152 primary cell none PB-T cell 1 +PB-T cell 1 ERS1505430 SAMEA50486668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 1 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 1 SAMEA50486668 sequencing assay ERX1861007 PBMC-single1_S41_L003_R2_001.fastq.gz PBMC-single1_S41_L003_R2_001.fastq.gz ERR1797279 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797279/ERR1797279_2.fastq.gz 302 152 primary cell none PB-T cell 1 +PB-T cell 1 ERS1505430 SAMEA50486668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 1 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 1 SAMEA50486668 sequencing assay ERX1861007 PBMC-single1_S41_L004_R1_001.fastq.gz PBMC-single1_S41_L004_R1_001.fastq.gz ERR1797280 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797280/ERR1797280_1.fastq.gz 302 152 primary cell none PB-T cell 1 +PB-T cell 1 ERS1505430 SAMEA50486668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 1 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 1 SAMEA50486668 sequencing assay ERX1861007 PBMC-single1_S41_L004_R2_001.fastq.gz PBMC-single1_S41_L004_R2_001.fastq.gz ERR1797280 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797280/ERR1797280_2.fastq.gz 302 152 primary cell none PB-T cell 1 +PB-T cell 10 ERS1505431 SAMEA50487418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 10 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 10 SAMEA50487418 sequencing assay ERX1861008 PBMC-single10_S50_L001_R1_001.fastq.gz PBMC-single10_S50_L001_R1_001.fastq.gz ERR1797281 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797281/ERR1797281_1.fastq.gz 248 125 primary cell none PB-T cell 10 +PB-T cell 10 ERS1505431 SAMEA50487418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 10 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 10 SAMEA50487418 sequencing assay ERX1861008 PBMC-single10_S50_L001_R2_001.fastq.gz PBMC-single10_S50_L001_R2_001.fastq.gz ERR1797281 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797281/ERR1797281_2.fastq.gz 70 36 primary cell none PB-T cell 10 +PB-T cell 10 ERS1505431 SAMEA50487418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 10 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 10 SAMEA50487418 sequencing assay ERX1861008 PBMC-single10_S50_L002_R1_001.fastq.gz PBMC-single10_S50_L002_R1_001.fastq.gz ERR1797282 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797282/ERR1797282_1.fastq.gz 302 152 primary cell none PB-T cell 10 +PB-T cell 10 ERS1505431 SAMEA50487418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 10 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 10 SAMEA50487418 sequencing assay ERX1861008 PBMC-single10_S50_L002_R2_001.fastq.gz PBMC-single10_S50_L002_R2_001.fastq.gz ERR1797282 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797282/ERR1797282_2.fastq.gz 70 36 primary cell none PB-T cell 10 +PB-T cell 10 ERS1505431 SAMEA50487418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 10 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 10 SAMEA50487418 sequencing assay ERX1861008 PBMC-single10_S50_L003_R1_001.fastq.gz PBMC-single10_S50_L003_R1_001.fastq.gz ERR1797283 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797283/ERR1797283_1.fastq.gz 302 152 primary cell none PB-T cell 10 +PB-T cell 10 ERS1505431 SAMEA50487418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 10 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 10 SAMEA50487418 sequencing assay ERX1861008 PBMC-single10_S50_L003_R2_001.fastq.gz PBMC-single10_S50_L003_R2_001.fastq.gz ERR1797283 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797283/ERR1797283_2.fastq.gz 302 152 primary cell none PB-T cell 10 +PB-T cell 10 ERS1505431 SAMEA50487418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 10 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 10 SAMEA50487418 sequencing assay ERX1861008 PBMC-single10_S50_L004_R1_001.fastq.gz PBMC-single10_S50_L004_R1_001.fastq.gz ERR1797284 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797284/ERR1797284_1.fastq.gz 300 151 primary cell none PB-T cell 10 +PB-T cell 10 ERS1505431 SAMEA50487418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 10 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 10 SAMEA50487418 sequencing assay ERX1861008 PBMC-single10_S50_L004_R2_001.fastq.gz PBMC-single10_S50_L004_R2_001.fastq.gz ERR1797284 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797284/ERR1797284_2.fastq.gz 300 151 primary cell none PB-T cell 10 +PB-T cell 11 ERS1505432 SAMEA50488168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 11 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 11 SAMEA50488168 sequencing assay ERX1861009 PBMC-single11_S51_L001_R1_001.fastq.gz PBMC-single11_S51_L001_R1_001.fastq.gz ERR1797285 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797285/ERR1797285_1.fastq.gz 188 95 primary cell none PB-T cell 11 +PB-T cell 11 ERS1505432 SAMEA50488168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 11 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 11 SAMEA50488168 sequencing assay ERX1861009 PBMC-single11_S51_L001_R2_001.fastq.gz PBMC-single11_S51_L001_R2_001.fastq.gz ERR1797285 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797285/ERR1797285_2.fastq.gz 302 152 primary cell none PB-T cell 11 +PB-T cell 11 ERS1505432 SAMEA50488168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 11 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 11 SAMEA50488168 sequencing assay ERX1861009 PBMC-single11_S51_L002_R1_001.fastq.gz PBMC-single11_S51_L002_R1_001.fastq.gz ERR1797286 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797286/ERR1797286_1.fastq.gz 218 110 primary cell none PB-T cell 11 +PB-T cell 11 ERS1505432 SAMEA50488168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 11 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 11 SAMEA50488168 sequencing assay ERX1861009 PBMC-single11_S51_L002_R2_001.fastq.gz PBMC-single11_S51_L002_R2_001.fastq.gz ERR1797286 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797286/ERR1797286_2.fastq.gz 302 152 primary cell none PB-T cell 11 +PB-T cell 11 ERS1505432 SAMEA50488168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 11 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 11 SAMEA50488168 sequencing assay ERX1861009 PBMC-single11_S51_L003_R1_001.fastq.gz PBMC-single11_S51_L003_R1_001.fastq.gz ERR1797287 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797287/ERR1797287_1.fastq.gz 292 147 primary cell none PB-T cell 11 +PB-T cell 11 ERS1505432 SAMEA50488168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 11 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 11 SAMEA50488168 sequencing assay ERX1861009 PBMC-single11_S51_L003_R2_001.fastq.gz PBMC-single11_S51_L003_R2_001.fastq.gz ERR1797287 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797287/ERR1797287_2.fastq.gz 302 152 primary cell none PB-T cell 11 +PB-T cell 11 ERS1505432 SAMEA50488168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 11 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 11 SAMEA50488168 sequencing assay ERX1861009 PBMC-single11_S51_L004_R1_001.fastq.gz PBMC-single11_S51_L004_R1_001.fastq.gz ERR1797288 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797288/ERR1797288_1.fastq.gz 302 152 primary cell none PB-T cell 11 +PB-T cell 11 ERS1505432 SAMEA50488168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 11 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 11 SAMEA50488168 sequencing assay ERX1861009 PBMC-single11_S51_L004_R2_001.fastq.gz PBMC-single11_S51_L004_R2_001.fastq.gz ERR1797288 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797288/ERR1797288_2.fastq.gz 302 152 primary cell none PB-T cell 11 +PB-T cell 12 ERS1505433 SAMEA50488918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 12 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 12 SAMEA50488918 sequencing assay ERX1861010 PBMC-single12_S52_L001_R1_001.fastq.gz PBMC-single12_S52_L001_R1_001.fastq.gz ERR1797289 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797289/ERR1797289_1.fastq.gz 280 141 primary cell none PB-T cell 12 +PB-T cell 12 ERS1505433 SAMEA50488918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 12 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 12 SAMEA50488918 sequencing assay ERX1861010 PBMC-single12_S52_L001_R2_001.fastq.gz PBMC-single12_S52_L001_R2_001.fastq.gz ERR1797289 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797289/ERR1797289_2.fastq.gz 70 36 primary cell none PB-T cell 12 +PB-T cell 12 ERS1505433 SAMEA50488918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 12 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 12 SAMEA50488918 sequencing assay ERX1861010 PBMC-single12_S52_L002_R1_001.fastq.gz PBMC-single12_S52_L002_R1_001.fastq.gz ERR1797290 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797290/ERR1797290_1.fastq.gz 302 152 primary cell none PB-T cell 12 +PB-T cell 12 ERS1505433 SAMEA50488918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 12 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 12 SAMEA50488918 sequencing assay ERX1861010 PBMC-single12_S52_L002_R2_001.fastq.gz PBMC-single12_S52_L002_R2_001.fastq.gz ERR1797290 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797290/ERR1797290_2.fastq.gz 302 152 primary cell none PB-T cell 12 +PB-T cell 12 ERS1505433 SAMEA50488918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 12 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 12 SAMEA50488918 sequencing assay ERX1861010 PBMC-single12_S52_L003_R1_001.fastq.gz PBMC-single12_S52_L003_R1_001.fastq.gz ERR1797291 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797291/ERR1797291_1.fastq.gz 300 151 primary cell none PB-T cell 12 +PB-T cell 12 ERS1505433 SAMEA50488918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 12 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 12 SAMEA50488918 sequencing assay ERX1861010 PBMC-single12_S52_L003_R2_001.fastq.gz PBMC-single12_S52_L003_R2_001.fastq.gz ERR1797291 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797291/ERR1797291_2.fastq.gz 300 151 primary cell none PB-T cell 12 +PB-T cell 12 ERS1505433 SAMEA50488918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 12 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 12 SAMEA50488918 sequencing assay ERX1861010 PBMC-single12_S52_L004_R1_001.fastq.gz PBMC-single12_S52_L004_R1_001.fastq.gz ERR1797292 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797292/ERR1797292_1.fastq.gz 302 152 primary cell none PB-T cell 12 +PB-T cell 12 ERS1505433 SAMEA50488918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 12 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 12 SAMEA50488918 sequencing assay ERX1861010 PBMC-single12_S52_L004_R2_001.fastq.gz PBMC-single12_S52_L004_R2_001.fastq.gz ERR1797292 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797292/ERR1797292_2.fastq.gz 296 149 primary cell none PB-T cell 12 +PB-T cell 13 ERS1505434 SAMEA50489668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 13 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 13 SAMEA50489668 sequencing assay ERX1861011 PBMC-single13_S53_L001_R1_001.fastq.gz PBMC-single13_S53_L001_R1_001.fastq.gz ERR1797293 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797293/ERR1797293_1.fastq.gz 250 126 primary cell none PB-T cell 13 +PB-T cell 13 ERS1505434 SAMEA50489668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 13 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 13 SAMEA50489668 sequencing assay ERX1861011 PBMC-single13_S53_L001_R2_001.fastq.gz PBMC-single13_S53_L001_R2_001.fastq.gz ERR1797293 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797293/ERR1797293_2.fastq.gz 302 152 primary cell none PB-T cell 13 +PB-T cell 13 ERS1505434 SAMEA50489668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 13 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 13 SAMEA50489668 sequencing assay ERX1861011 PBMC-single13_S53_L002_R1_001.fastq.gz PBMC-single13_S53_L002_R1_001.fastq.gz ERR1797294 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797294/ERR1797294_1.fastq.gz 302 152 primary cell none PB-T cell 13 +PB-T cell 13 ERS1505434 SAMEA50489668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 13 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 13 SAMEA50489668 sequencing assay ERX1861011 PBMC-single13_S53_L002_R2_001.fastq.gz PBMC-single13_S53_L002_R2_001.fastq.gz ERR1797294 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797294/ERR1797294_2.fastq.gz 70 36 primary cell none PB-T cell 13 +PB-T cell 13 ERS1505434 SAMEA50489668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 13 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 13 SAMEA50489668 sequencing assay ERX1861011 PBMC-single13_S53_L003_R1_001.fastq.gz PBMC-single13_S53_L003_R1_001.fastq.gz ERR1797295 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797295/ERR1797295_1.fastq.gz 300 151 primary cell none PB-T cell 13 +PB-T cell 13 ERS1505434 SAMEA50489668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 13 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 13 SAMEA50489668 sequencing assay ERX1861011 PBMC-single13_S53_L003_R2_001.fastq.gz PBMC-single13_S53_L003_R2_001.fastq.gz ERR1797295 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797295/ERR1797295_2.fastq.gz 302 152 primary cell none PB-T cell 13 +PB-T cell 13 ERS1505434 SAMEA50489668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 13 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 13 SAMEA50489668 sequencing assay ERX1861011 PBMC-single13_S53_L004_R1_001.fastq.gz PBMC-single13_S53_L004_R1_001.fastq.gz ERR1797296 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797296/ERR1797296_1.fastq.gz 302 152 primary cell none PB-T cell 13 +PB-T cell 13 ERS1505434 SAMEA50489668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 13 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 13 SAMEA50489668 sequencing assay ERX1861011 PBMC-single13_S53_L004_R2_001.fastq.gz PBMC-single13_S53_L004_R2_001.fastq.gz ERR1797296 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797296/ERR1797296_2.fastq.gz 300 151 primary cell none PB-T cell 13 +PB-T cell 14 ERS1505435 SAMEA50490418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 14 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 14 SAMEA50490418 sequencing assay ERX1861012 PBMC-single14_S54_L001_R1_001.fastq.gz PBMC-single14_S54_L001_R1_001.fastq.gz ERR1797297 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797297/ERR1797297_1.fastq.gz 248 125 primary cell none PB-T cell 14 +PB-T cell 14 ERS1505435 SAMEA50490418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 14 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 14 SAMEA50490418 sequencing assay ERX1861012 PBMC-single14_S54_L001_R2_001.fastq.gz PBMC-single14_S54_L001_R2_001.fastq.gz ERR1797297 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797297/ERR1797297_2.fastq.gz 302 152 primary cell none PB-T cell 14 +PB-T cell 14 ERS1505435 SAMEA50490418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 14 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 14 SAMEA50490418 sequencing assay ERX1861012 PBMC-single14_S54_L002_R1_001.fastq.gz PBMC-single14_S54_L002_R1_001.fastq.gz ERR1797298 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797298/ERR1797298_1.fastq.gz 302 152 primary cell none PB-T cell 14 +PB-T cell 14 ERS1505435 SAMEA50490418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 14 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 14 SAMEA50490418 sequencing assay ERX1861012 PBMC-single14_S54_L002_R2_001.fastq.gz PBMC-single14_S54_L002_R2_001.fastq.gz ERR1797298 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797298/ERR1797298_2.fastq.gz 70 36 primary cell none PB-T cell 14 +PB-T cell 14 ERS1505435 SAMEA50490418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 14 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 14 SAMEA50490418 sequencing assay ERX1861012 PBMC-single14_S54_L003_R1_001.fastq.gz PBMC-single14_S54_L003_R1_001.fastq.gz ERR1797299 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797299/ERR1797299_1.fastq.gz 302 152 primary cell none PB-T cell 14 +PB-T cell 14 ERS1505435 SAMEA50490418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 14 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 14 SAMEA50490418 sequencing assay ERX1861012 PBMC-single14_S54_L003_R2_001.fastq.gz PBMC-single14_S54_L003_R2_001.fastq.gz ERR1797299 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797299/ERR1797299_2.fastq.gz 300 151 primary cell none PB-T cell 14 +PB-T cell 14 ERS1505435 SAMEA50490418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 14 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 14 SAMEA50490418 sequencing assay ERX1861012 PBMC-single14_S54_L004_R1_001.fastq.gz PBMC-single14_S54_L004_R1_001.fastq.gz ERR1797300 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797300/ERR1797300_1.fastq.gz 302 152 primary cell none PB-T cell 14 +PB-T cell 14 ERS1505435 SAMEA50490418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 14 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 14 SAMEA50490418 sequencing assay ERX1861012 PBMC-single14_S54_L004_R2_001.fastq.gz PBMC-single14_S54_L004_R2_001.fastq.gz ERR1797300 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797300/ERR1797300_2.fastq.gz 302 152 primary cell none PB-T cell 14 +PB-T cell 15 ERS1505436 SAMEA50491168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 15 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 15 SAMEA50491168 sequencing assay ERX1861013 PBMC-single15_S55_L001_R1_001.fastq.gz PBMC-single15_S55_L001_R1_001.fastq.gz ERR1797301 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797301/ERR1797301_1.fastq.gz 252 127 primary cell none PB-T cell 15 +PB-T cell 15 ERS1505436 SAMEA50491168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 15 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 15 SAMEA50491168 sequencing assay ERX1861013 PBMC-single15_S55_L001_R2_001.fastq.gz PBMC-single15_S55_L001_R2_001.fastq.gz ERR1797301 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797301/ERR1797301_2.fastq.gz 302 152 primary cell none PB-T cell 15 +PB-T cell 15 ERS1505436 SAMEA50491168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 15 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 15 SAMEA50491168 sequencing assay ERX1861013 PBMC-single15_S55_L002_R1_001.fastq.gz PBMC-single15_S55_L002_R1_001.fastq.gz ERR1797302 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797302/ERR1797302_1.fastq.gz 246 124 primary cell none PB-T cell 15 +PB-T cell 15 ERS1505436 SAMEA50491168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 15 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 15 SAMEA50491168 sequencing assay ERX1861013 PBMC-single15_S55_L002_R2_001.fastq.gz PBMC-single15_S55_L002_R2_001.fastq.gz ERR1797302 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797302/ERR1797302_2.fastq.gz 70 36 primary cell none PB-T cell 15 +PB-T cell 15 ERS1505436 SAMEA50491168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 15 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 15 SAMEA50491168 sequencing assay ERX1861013 PBMC-single15_S55_L003_R1_001.fastq.gz PBMC-single15_S55_L003_R1_001.fastq.gz ERR1797303 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797303/ERR1797303_1.fastq.gz 240 121 primary cell none PB-T cell 15 +PB-T cell 15 ERS1505436 SAMEA50491168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 15 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 15 SAMEA50491168 sequencing assay ERX1861013 PBMC-single15_S55_L003_R2_001.fastq.gz PBMC-single15_S55_L003_R2_001.fastq.gz ERR1797303 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797303/ERR1797303_2.fastq.gz 240 121 primary cell none PB-T cell 15 +PB-T cell 15 ERS1505436 SAMEA50491168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 15 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 15 SAMEA50491168 sequencing assay ERX1861013 PBMC-single15_S55_L004_R1_001.fastq.gz PBMC-single15_S55_L004_R1_001.fastq.gz ERR1797304 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797304/ERR1797304_1.fastq.gz 302 152 primary cell none PB-T cell 15 +PB-T cell 15 ERS1505436 SAMEA50491168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 15 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 15 SAMEA50491168 sequencing assay ERX1861013 PBMC-single15_S55_L004_R2_001.fastq.gz PBMC-single15_S55_L004_R2_001.fastq.gz ERR1797304 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797304/ERR1797304_2.fastq.gz 300 151 primary cell none PB-T cell 15 +PB-T cell 16 ERS1505437 SAMEA50491918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 16 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 16 SAMEA50491918 sequencing assay ERX1861014 PBMC-single16_S56_L001_R1_001.fastq.gz PBMC-single16_S56_L001_R1_001.fastq.gz ERR1797305 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797305/ERR1797305_1.fastq.gz 164 83 primary cell none PB-T cell 16 +PB-T cell 16 ERS1505437 SAMEA50491918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 16 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 16 SAMEA50491918 sequencing assay ERX1861014 PBMC-single16_S56_L001_R2_001.fastq.gz PBMC-single16_S56_L001_R2_001.fastq.gz ERR1797305 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797305/ERR1797305_2.fastq.gz 302 152 primary cell none PB-T cell 16 +PB-T cell 16 ERS1505437 SAMEA50491918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 16 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 16 SAMEA50491918 sequencing assay ERX1861014 PBMC-single16_S56_L002_R1_001.fastq.gz PBMC-single16_S56_L002_R1_001.fastq.gz ERR1797306 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797306/ERR1797306_1.fastq.gz 302 152 primary cell none PB-T cell 16 +PB-T cell 16 ERS1505437 SAMEA50491918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 16 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 16 SAMEA50491918 sequencing assay ERX1861014 PBMC-single16_S56_L002_R2_001.fastq.gz PBMC-single16_S56_L002_R2_001.fastq.gz ERR1797306 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797306/ERR1797306_2.fastq.gz 302 152 primary cell none PB-T cell 16 +PB-T cell 16 ERS1505437 SAMEA50491918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 16 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 16 SAMEA50491918 sequencing assay ERX1861014 PBMC-single16_S56_L003_R1_001.fastq.gz PBMC-single16_S56_L003_R1_001.fastq.gz ERR1797307 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797307/ERR1797307_1.fastq.gz 302 152 primary cell none PB-T cell 16 +PB-T cell 16 ERS1505437 SAMEA50491918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 16 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 16 SAMEA50491918 sequencing assay ERX1861014 PBMC-single16_S56_L003_R2_001.fastq.gz PBMC-single16_S56_L003_R2_001.fastq.gz ERR1797307 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797307/ERR1797307_2.fastq.gz 302 152 primary cell none PB-T cell 16 +PB-T cell 16 ERS1505437 SAMEA50491918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 16 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 16 SAMEA50491918 sequencing assay ERX1861014 PBMC-single16_S56_L004_R1_001.fastq.gz PBMC-single16_S56_L004_R1_001.fastq.gz ERR1797308 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797308/ERR1797308_1.fastq.gz 300 151 primary cell none PB-T cell 16 +PB-T cell 16 ERS1505437 SAMEA50491918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 16 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 16 SAMEA50491918 sequencing assay ERX1861014 PBMC-single16_S56_L004_R2_001.fastq.gz PBMC-single16_S56_L004_R2_001.fastq.gz ERR1797308 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797308/ERR1797308_2.fastq.gz 302 152 primary cell none PB-T cell 16 +PB-T cell 17 ERS1505438 SAMEA50492668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 17 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 17 SAMEA50492668 sequencing assay ERX1861015 PBMC-single17_S57_L001_R1_001.fastq.gz PBMC-single17_S57_L001_R1_001.fastq.gz ERR1797309 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797309/ERR1797309_1.fastq.gz 254 128 primary cell none PB-T cell 17 +PB-T cell 17 ERS1505438 SAMEA50492668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 17 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 17 SAMEA50492668 sequencing assay ERX1861015 PBMC-single17_S57_L001_R2_001.fastq.gz PBMC-single17_S57_L001_R2_001.fastq.gz ERR1797309 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797309/ERR1797309_2.fastq.gz 70 36 primary cell none PB-T cell 17 +PB-T cell 17 ERS1505438 SAMEA50492668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 17 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 17 SAMEA50492668 sequencing assay ERX1861015 PBMC-single17_S57_L002_R1_001.fastq.gz PBMC-single17_S57_L002_R1_001.fastq.gz ERR1797310 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797310/ERR1797310_1.fastq.gz 226 114 primary cell none PB-T cell 17 +PB-T cell 17 ERS1505438 SAMEA50492668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 17 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 17 SAMEA50492668 sequencing assay ERX1861015 PBMC-single17_S57_L002_R2_001.fastq.gz PBMC-single17_S57_L002_R2_001.fastq.gz ERR1797310 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797310/ERR1797310_2.fastq.gz 70 36 primary cell none PB-T cell 17 +PB-T cell 17 ERS1505438 SAMEA50492668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 17 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 17 SAMEA50492668 sequencing assay ERX1861015 PBMC-single17_S57_L003_R1_001.fastq.gz PBMC-single17_S57_L003_R1_001.fastq.gz ERR1797311 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797311/ERR1797311_1.fastq.gz 302 152 primary cell none PB-T cell 17 +PB-T cell 17 ERS1505438 SAMEA50492668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 17 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 17 SAMEA50492668 sequencing assay ERX1861015 PBMC-single17_S57_L003_R2_001.fastq.gz PBMC-single17_S57_L003_R2_001.fastq.gz ERR1797311 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797311/ERR1797311_2.fastq.gz 300 151 primary cell none PB-T cell 17 +PB-T cell 17 ERS1505438 SAMEA50492668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 17 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 17 SAMEA50492668 sequencing assay ERX1861015 PBMC-single17_S57_L004_R1_001.fastq.gz PBMC-single17_S57_L004_R1_001.fastq.gz ERR1797312 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797312/ERR1797312_1.fastq.gz 302 152 primary cell none PB-T cell 17 +PB-T cell 17 ERS1505438 SAMEA50492668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 17 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 17 SAMEA50492668 sequencing assay ERX1861015 PBMC-single17_S57_L004_R2_001.fastq.gz PBMC-single17_S57_L004_R2_001.fastq.gz ERR1797312 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797312/ERR1797312_2.fastq.gz 302 152 primary cell none PB-T cell 17 +PB-T cell 18 ERS1505439 SAMEA50493418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 18 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 18 SAMEA50493418 sequencing assay ERX1861016 PBMC-single18_S58_L001_R1_001.fastq.gz PBMC-single18_S58_L001_R1_001.fastq.gz ERR1797313 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797313/ERR1797313_1.fastq.gz 250 126 primary cell none PB-T cell 18 +PB-T cell 18 ERS1505439 SAMEA50493418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 18 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 18 SAMEA50493418 sequencing assay ERX1861016 PBMC-single18_S58_L001_R2_001.fastq.gz PBMC-single18_S58_L001_R2_001.fastq.gz ERR1797313 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797313/ERR1797313_2.fastq.gz 302 152 primary cell none PB-T cell 18 +PB-T cell 18 ERS1505439 SAMEA50493418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 18 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 18 SAMEA50493418 sequencing assay ERX1861016 PBMC-single18_S58_L002_R1_001.fastq.gz PBMC-single18_S58_L002_R1_001.fastq.gz ERR1797314 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797314/ERR1797314_1.fastq.gz 302 152 primary cell none PB-T cell 18 +PB-T cell 18 ERS1505439 SAMEA50493418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 18 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 18 SAMEA50493418 sequencing assay ERX1861016 PBMC-single18_S58_L002_R2_001.fastq.gz PBMC-single18_S58_L002_R2_001.fastq.gz ERR1797314 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797314/ERR1797314_2.fastq.gz 302 152 primary cell none PB-T cell 18 +PB-T cell 18 ERS1505439 SAMEA50493418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 18 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 18 SAMEA50493418 sequencing assay ERX1861016 PBMC-single18_S58_L003_R1_001.fastq.gz PBMC-single18_S58_L003_R1_001.fastq.gz ERR1797315 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797315/ERR1797315_1.fastq.gz 300 151 primary cell none PB-T cell 18 +PB-T cell 18 ERS1505439 SAMEA50493418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 18 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 18 SAMEA50493418 sequencing assay ERX1861016 PBMC-single18_S58_L003_R2_001.fastq.gz PBMC-single18_S58_L003_R2_001.fastq.gz ERR1797315 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797315/ERR1797315_2.fastq.gz 302 152 primary cell none PB-T cell 18 +PB-T cell 18 ERS1505439 SAMEA50493418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 18 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 18 SAMEA50493418 sequencing assay ERX1861016 PBMC-single18_S58_L004_R1_001.fastq.gz PBMC-single18_S58_L004_R1_001.fastq.gz ERR1797316 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797316/ERR1797316_1.fastq.gz 302 152 primary cell none PB-T cell 18 +PB-T cell 18 ERS1505439 SAMEA50493418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 18 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 18 SAMEA50493418 sequencing assay ERX1861016 PBMC-single18_S58_L004_R2_001.fastq.gz PBMC-single18_S58_L004_R2_001.fastq.gz ERR1797316 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797316/ERR1797316_2.fastq.gz 302 152 primary cell none PB-T cell 18 +PB-T cell 2 ERS1505440 SAMEA50494168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 2 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 2 SAMEA50494168 sequencing assay ERX1861017 PBMC-single2_S42_L001_R1_001.fastq.gz PBMC-single2_S42_L001_R1_001.fastq.gz ERR1797317 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797317/ERR1797317_1.fastq.gz 252 127 primary cell none PB-T cell 2 +PB-T cell 2 ERS1505440 SAMEA50494168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 2 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 2 SAMEA50494168 sequencing assay ERX1861017 PBMC-single2_S42_L001_R2_001.fastq.gz PBMC-single2_S42_L001_R2_001.fastq.gz ERR1797317 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797317/ERR1797317_2.fastq.gz 70 36 primary cell none PB-T cell 2 +PB-T cell 2 ERS1505440 SAMEA50494168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 2 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 2 SAMEA50494168 sequencing assay ERX1861017 PBMC-single2_S42_L002_R1_001.fastq.gz PBMC-single2_S42_L002_R1_001.fastq.gz ERR1797318 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797318/ERR1797318_1.fastq.gz 302 152 primary cell none PB-T cell 2 +PB-T cell 2 ERS1505440 SAMEA50494168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 2 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 2 SAMEA50494168 sequencing assay ERX1861017 PBMC-single2_S42_L002_R2_001.fastq.gz PBMC-single2_S42_L002_R2_001.fastq.gz ERR1797318 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797318/ERR1797318_2.fastq.gz 302 152 primary cell none PB-T cell 2 +PB-T cell 2 ERS1505440 SAMEA50494168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 2 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 2 SAMEA50494168 sequencing assay ERX1861017 PBMC-single2_S42_L003_R1_001.fastq.gz PBMC-single2_S42_L003_R1_001.fastq.gz ERR1797319 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797319/ERR1797319_1.fastq.gz 298 150 primary cell none PB-T cell 2 +PB-T cell 2 ERS1505440 SAMEA50494168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 2 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 2 SAMEA50494168 sequencing assay ERX1861017 PBMC-single2_S42_L003_R2_001.fastq.gz PBMC-single2_S42_L003_R2_001.fastq.gz ERR1797319 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797319/ERR1797319_2.fastq.gz 302 152 primary cell none PB-T cell 2 +PB-T cell 2 ERS1505440 SAMEA50494168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 2 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 2 SAMEA50494168 sequencing assay ERX1861017 PBMC-single2_S42_L004_R1_001.fastq.gz PBMC-single2_S42_L004_R1_001.fastq.gz ERR1797320 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797320/ERR1797320_1.fastq.gz 300 151 primary cell none PB-T cell 2 +PB-T cell 2 ERS1505440 SAMEA50494168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 2 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 2 SAMEA50494168 sequencing assay ERX1861017 PBMC-single2_S42_L004_R2_001.fastq.gz PBMC-single2_S42_L004_R2_001.fastq.gz ERR1797320 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797320/ERR1797320_2.fastq.gz 302 152 primary cell none PB-T cell 2 +PB-T cell 3 ERS1505441 SAMEA50494918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 3 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 3 SAMEA50494918 sequencing assay ERX1861018 PBMC-single3_S43_L001_R1_001.fastq.gz PBMC-single3_S43_L001_R1_001.fastq.gz ERR1797321 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797321/ERR1797321_1.fastq.gz 280 141 primary cell none PB-T cell 3 +PB-T cell 3 ERS1505441 SAMEA50494918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 3 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 3 SAMEA50494918 sequencing assay ERX1861018 PBMC-single3_S43_L001_R2_001.fastq.gz PBMC-single3_S43_L001_R2_001.fastq.gz ERR1797321 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797321/ERR1797321_2.fastq.gz 302 152 primary cell none PB-T cell 3 +PB-T cell 3 ERS1505441 SAMEA50494918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 3 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 3 SAMEA50494918 sequencing assay ERX1861018 PBMC-single3_S43_L002_R1_001.fastq.gz PBMC-single3_S43_L002_R1_001.fastq.gz ERR1797322 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797322/ERR1797322_1.fastq.gz 302 152 primary cell none PB-T cell 3 +PB-T cell 3 ERS1505441 SAMEA50494918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 3 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 3 SAMEA50494918 sequencing assay ERX1861018 PBMC-single3_S43_L002_R2_001.fastq.gz PBMC-single3_S43_L002_R2_001.fastq.gz ERR1797322 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797322/ERR1797322_2.fastq.gz 70 36 primary cell none PB-T cell 3 +PB-T cell 3 ERS1505441 SAMEA50494918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 3 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 3 SAMEA50494918 sequencing assay ERX1861018 PBMC-single3_S43_L003_R1_001.fastq.gz PBMC-single3_S43_L003_R1_001.fastq.gz ERR1797323 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797323/ERR1797323_1.fastq.gz 234 118 primary cell none PB-T cell 3 +PB-T cell 3 ERS1505441 SAMEA50494918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 3 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 3 SAMEA50494918 sequencing assay ERX1861018 PBMC-single3_S43_L003_R2_001.fastq.gz PBMC-single3_S43_L003_R2_001.fastq.gz ERR1797323 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797323/ERR1797323_2.fastq.gz 302 152 primary cell none PB-T cell 3 +PB-T cell 3 ERS1505441 SAMEA50494918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 3 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 3 SAMEA50494918 sequencing assay ERX1861018 PBMC-single3_S43_L004_R1_001.fastq.gz PBMC-single3_S43_L004_R1_001.fastq.gz ERR1797324 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797324/ERR1797324_1.fastq.gz 298 150 primary cell none PB-T cell 3 +PB-T cell 3 ERS1505441 SAMEA50494918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 3 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 3 SAMEA50494918 sequencing assay ERX1861018 PBMC-single3_S43_L004_R2_001.fastq.gz PBMC-single3_S43_L004_R2_001.fastq.gz ERR1797324 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797324/ERR1797324_2.fastq.gz 302 152 primary cell none PB-T cell 3 +PB-T cell 4 ERS1505442 SAMEA50495668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 4 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 4 SAMEA50495668 sequencing assay ERX1861019 PBMC-single4_S44_L001_R1_001.fastq.gz PBMC-single4_S44_L001_R1_001.fastq.gz ERR1797325 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797325/ERR1797325_1.fastq.gz 268 135 primary cell none PB-T cell 4 +PB-T cell 4 ERS1505442 SAMEA50495668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 4 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 4 SAMEA50495668 sequencing assay ERX1861019 PBMC-single4_S44_L001_R2_001.fastq.gz PBMC-single4_S44_L001_R2_001.fastq.gz ERR1797325 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797325/ERR1797325_2.fastq.gz 70 36 primary cell none PB-T cell 4 +PB-T cell 4 ERS1505442 SAMEA50495668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 4 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 4 SAMEA50495668 sequencing assay ERX1861019 PBMC-single4_S44_L002_R1_001.fastq.gz PBMC-single4_S44_L002_R1_001.fastq.gz ERR1797326 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797326/ERR1797326_1.fastq.gz 244 123 primary cell none PB-T cell 4 +PB-T cell 4 ERS1505442 SAMEA50495668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 4 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 4 SAMEA50495668 sequencing assay ERX1861019 PBMC-single4_S44_L002_R2_001.fastq.gz PBMC-single4_S44_L002_R2_001.fastq.gz ERR1797326 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797326/ERR1797326_2.fastq.gz 302 152 primary cell none PB-T cell 4 +PB-T cell 4 ERS1505442 SAMEA50495668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 4 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 4 SAMEA50495668 sequencing assay ERX1861019 PBMC-single4_S44_L003_R1_001.fastq.gz PBMC-single4_S44_L003_R1_001.fastq.gz ERR1797327 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797327/ERR1797327_1.fastq.gz 302 152 primary cell none PB-T cell 4 +PB-T cell 4 ERS1505442 SAMEA50495668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 4 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 4 SAMEA50495668 sequencing assay ERX1861019 PBMC-single4_S44_L003_R2_001.fastq.gz PBMC-single4_S44_L003_R2_001.fastq.gz ERR1797327 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797327/ERR1797327_2.fastq.gz 302 152 primary cell none PB-T cell 4 +PB-T cell 4 ERS1505442 SAMEA50495668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 4 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 4 SAMEA50495668 sequencing assay ERX1861019 PBMC-single4_S44_L004_R1_001.fastq.gz PBMC-single4_S44_L004_R1_001.fastq.gz ERR1797328 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797328/ERR1797328_1.fastq.gz 302 152 primary cell none PB-T cell 4 +PB-T cell 4 ERS1505442 SAMEA50495668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 4 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 4 SAMEA50495668 sequencing assay ERX1861019 PBMC-single4_S44_L004_R2_001.fastq.gz PBMC-single4_S44_L004_R2_001.fastq.gz ERR1797328 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797328/ERR1797328_2.fastq.gz 302 152 primary cell none PB-T cell 4 +PB-T cell 5 ERS1505443 SAMEA50496418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 5 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 5 SAMEA50496418 sequencing assay ERX1861020 PBMC-single5_S45_L001_R1_001.fastq.gz PBMC-single5_S45_L001_R1_001.fastq.gz ERR1797329 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797329/ERR1797329_1.fastq.gz 302 152 primary cell none PB-T cell 5 +PB-T cell 5 ERS1505443 SAMEA50496418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 5 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 5 SAMEA50496418 sequencing assay ERX1861020 PBMC-single5_S45_L001_R2_001.fastq.gz PBMC-single5_S45_L001_R2_001.fastq.gz ERR1797329 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797329/ERR1797329_2.fastq.gz 70 36 primary cell none PB-T cell 5 +PB-T cell 5 ERS1505443 SAMEA50496418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 5 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 5 SAMEA50496418 sequencing assay ERX1861020 PBMC-single5_S45_L002_R1_001.fastq.gz PBMC-single5_S45_L002_R1_001.fastq.gz ERR1797330 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797330/ERR1797330_1.fastq.gz 302 152 primary cell none PB-T cell 5 +PB-T cell 5 ERS1505443 SAMEA50496418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 5 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 5 SAMEA50496418 sequencing assay ERX1861020 PBMC-single5_S45_L002_R2_001.fastq.gz PBMC-single5_S45_L002_R2_001.fastq.gz ERR1797330 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797330/ERR1797330_2.fastq.gz 302 152 primary cell none PB-T cell 5 +PB-T cell 5 ERS1505443 SAMEA50496418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 5 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 5 SAMEA50496418 sequencing assay ERX1861020 PBMC-single5_S45_L003_R1_001.fastq.gz PBMC-single5_S45_L003_R1_001.fastq.gz ERR1797331 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797331/ERR1797331_1.fastq.gz 152 77 primary cell none PB-T cell 5 +PB-T cell 5 ERS1505443 SAMEA50496418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 5 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 5 SAMEA50496418 sequencing assay ERX1861020 PBMC-single5_S45_L003_R2_001.fastq.gz PBMC-single5_S45_L003_R2_001.fastq.gz ERR1797331 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797331/ERR1797331_2.fastq.gz 152 77 primary cell none PB-T cell 5 +PB-T cell 5 ERS1505443 SAMEA50496418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 5 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 5 SAMEA50496418 sequencing assay ERX1861020 PBMC-single5_S45_L004_R1_001.fastq.gz PBMC-single5_S45_L004_R1_001.fastq.gz ERR1797332 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797332/ERR1797332_1.fastq.gz 300 151 primary cell none PB-T cell 5 +PB-T cell 5 ERS1505443 SAMEA50496418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 5 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 5 SAMEA50496418 sequencing assay ERX1861020 PBMC-single5_S45_L004_R2_001.fastq.gz PBMC-single5_S45_L004_R2_001.fastq.gz ERR1797332 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797332/ERR1797332_2.fastq.gz 302 152 primary cell none PB-T cell 5 +PB-T cell 6 ERS1505444 SAMEA50497168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 6 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 6 SAMEA50497168 sequencing assay ERX1861021 PBMC-single6_S46_L001_R1_001.fastq.gz PBMC-single6_S46_L001_R1_001.fastq.gz ERR1797333 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797333/ERR1797333_1.fastq.gz 302 152 primary cell none PB-T cell 6 +PB-T cell 6 ERS1505444 SAMEA50497168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 6 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 6 SAMEA50497168 sequencing assay ERX1861021 PBMC-single6_S46_L001_R2_001.fastq.gz PBMC-single6_S46_L001_R2_001.fastq.gz ERR1797333 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797333/ERR1797333_2.fastq.gz 70 36 primary cell none PB-T cell 6 +PB-T cell 6 ERS1505444 SAMEA50497168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 6 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 6 SAMEA50497168 sequencing assay ERX1861021 PBMC-single6_S46_L002_R1_001.fastq.gz PBMC-single6_S46_L002_R1_001.fastq.gz ERR1797334 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797334/ERR1797334_1.fastq.gz 234 118 primary cell none PB-T cell 6 +PB-T cell 6 ERS1505444 SAMEA50497168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 6 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 6 SAMEA50497168 sequencing assay ERX1861021 PBMC-single6_S46_L002_R2_001.fastq.gz PBMC-single6_S46_L002_R2_001.fastq.gz ERR1797334 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797334/ERR1797334_2.fastq.gz 302 152 primary cell none PB-T cell 6 +PB-T cell 6 ERS1505444 SAMEA50497168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 6 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 6 SAMEA50497168 sequencing assay ERX1861021 PBMC-single6_S46_L003_R1_001.fastq.gz PBMC-single6_S46_L003_R1_001.fastq.gz ERR1797335 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797335/ERR1797335_1.fastq.gz 302 152 primary cell none PB-T cell 6 +PB-T cell 6 ERS1505444 SAMEA50497168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 6 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 6 SAMEA50497168 sequencing assay ERX1861021 PBMC-single6_S46_L003_R2_001.fastq.gz PBMC-single6_S46_L003_R2_001.fastq.gz ERR1797335 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797335/ERR1797335_2.fastq.gz 302 152 primary cell none PB-T cell 6 +PB-T cell 6 ERS1505444 SAMEA50497168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 6 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 6 SAMEA50497168 sequencing assay ERX1861021 PBMC-single6_S46_L004_R1_001.fastq.gz PBMC-single6_S46_L004_R1_001.fastq.gz ERR1797336 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797336/ERR1797336_1.fastq.gz 302 152 primary cell none PB-T cell 6 +PB-T cell 6 ERS1505444 SAMEA50497168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 6 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 6 SAMEA50497168 sequencing assay ERX1861021 PBMC-single6_S46_L004_R2_001.fastq.gz PBMC-single6_S46_L004_R2_001.fastq.gz ERR1797336 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797336/ERR1797336_2.fastq.gz 302 152 primary cell none PB-T cell 6 +PB-T cell 7 ERS1505445 SAMEA50497918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 7 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 7 SAMEA50497918 sequencing assay ERX1861022 PBMC-single7_S47_L001_R1_001.fastq.gz PBMC-single7_S47_L001_R1_001.fastq.gz ERR1797337 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797337/ERR1797337_1.fastq.gz 302 152 primary cell none PB-T cell 7 +PB-T cell 7 ERS1505445 SAMEA50497918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 7 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 7 SAMEA50497918 sequencing assay ERX1861022 PBMC-single7_S47_L001_R2_001.fastq.gz PBMC-single7_S47_L001_R2_001.fastq.gz ERR1797337 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797337/ERR1797337_2.fastq.gz 302 152 primary cell none PB-T cell 7 +PB-T cell 7 ERS1505445 SAMEA50497918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 7 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 7 SAMEA50497918 sequencing assay ERX1861022 PBMC-single7_S47_L002_R1_001.fastq.gz PBMC-single7_S47_L002_R1_001.fastq.gz ERR1797338 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797338/ERR1797338_1.fastq.gz 228 115 primary cell none PB-T cell 7 +PB-T cell 7 ERS1505445 SAMEA50497918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 7 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 7 SAMEA50497918 sequencing assay ERX1861022 PBMC-single7_S47_L002_R2_001.fastq.gz PBMC-single7_S47_L002_R2_001.fastq.gz ERR1797338 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797338/ERR1797338_2.fastq.gz 302 152 primary cell none PB-T cell 7 +PB-T cell 7 ERS1505445 SAMEA50497918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 7 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 7 SAMEA50497918 sequencing assay ERX1861022 PBMC-single7_S47_L003_R1_001.fastq.gz PBMC-single7_S47_L003_R1_001.fastq.gz ERR1797339 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797339/ERR1797339_1.fastq.gz 218 110 primary cell none PB-T cell 7 +PB-T cell 7 ERS1505445 SAMEA50497918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 7 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 7 SAMEA50497918 sequencing assay ERX1861022 PBMC-single7_S47_L003_R2_001.fastq.gz PBMC-single7_S47_L003_R2_001.fastq.gz ERR1797339 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797339/ERR1797339_2.fastq.gz 218 110 primary cell none PB-T cell 7 +PB-T cell 7 ERS1505445 SAMEA50497918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 7 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 7 SAMEA50497918 sequencing assay ERX1861022 PBMC-single7_S47_L004_R1_001.fastq.gz PBMC-single7_S47_L004_R1_001.fastq.gz ERR1797340 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797340/ERR1797340_1.fastq.gz 236 119 primary cell none PB-T cell 7 +PB-T cell 7 ERS1505445 SAMEA50497918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 7 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 7 SAMEA50497918 sequencing assay ERX1861022 PBMC-single7_S47_L004_R2_001.fastq.gz PBMC-single7_S47_L004_R2_001.fastq.gz ERR1797340 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797340/ERR1797340_2.fastq.gz 236 119 primary cell none PB-T cell 7 +PB-T cell 8 ERS1505446 SAMEA50498668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 8 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 8 SAMEA50498668 sequencing assay ERX1861023 PBMC-single8_S48_L001_R1_001.fastq.gz PBMC-single8_S48_L001_R1_001.fastq.gz ERR1797341 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797341/ERR1797341_1.fastq.gz 284 143 primary cell none PB-T cell 8 +PB-T cell 8 ERS1505446 SAMEA50498668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 8 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 8 SAMEA50498668 sequencing assay ERX1861023 PBMC-single8_S48_L001_R2_001.fastq.gz PBMC-single8_S48_L001_R2_001.fastq.gz ERR1797341 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797341/ERR1797341_2.fastq.gz 302 152 primary cell none PB-T cell 8 +PB-T cell 8 ERS1505446 SAMEA50498668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 8 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 8 SAMEA50498668 sequencing assay ERX1861023 PBMC-single8_S48_L002_R1_001.fastq.gz PBMC-single8_S48_L002_R1_001.fastq.gz ERR1797342 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797342/ERR1797342_1.fastq.gz 302 152 primary cell none PB-T cell 8 +PB-T cell 8 ERS1505446 SAMEA50498668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 8 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 8 SAMEA50498668 sequencing assay ERX1861023 PBMC-single8_S48_L002_R2_001.fastq.gz PBMC-single8_S48_L002_R2_001.fastq.gz ERR1797342 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797342/ERR1797342_2.fastq.gz 302 152 primary cell none PB-T cell 8 +PB-T cell 8 ERS1505446 SAMEA50498668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 8 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 8 SAMEA50498668 sequencing assay ERX1861023 PBMC-single8_S48_L003_R1_001.fastq.gz PBMC-single8_S48_L003_R1_001.fastq.gz ERR1797343 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797343/ERR1797343_1.fastq.gz 96 49 primary cell none PB-T cell 8 +PB-T cell 8 ERS1505446 SAMEA50498668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 8 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 8 SAMEA50498668 sequencing assay ERX1861023 PBMC-single8_S48_L003_R2_001.fastq.gz PBMC-single8_S48_L003_R2_001.fastq.gz ERR1797343 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797343/ERR1797343_2.fastq.gz 96 49 primary cell none PB-T cell 8 +PB-T cell 8 ERS1505446 SAMEA50498668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 8 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 8 SAMEA50498668 sequencing assay ERX1861023 PBMC-single8_S48_L004_R1_001.fastq.gz PBMC-single8_S48_L004_R1_001.fastq.gz ERR1797344 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797344/ERR1797344_1.fastq.gz 302 152 primary cell none PB-T cell 8 +PB-T cell 8 ERS1505446 SAMEA50498668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 8 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 8 SAMEA50498668 sequencing assay ERX1861023 PBMC-single8_S48_L004_R2_001.fastq.gz PBMC-single8_S48_L004_R2_001.fastq.gz ERR1797344 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797344/ERR1797344_2.fastq.gz 298 150 primary cell none PB-T cell 8 +PB-T cell 9 ERS1505447 SAMEA50499418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 9 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 9 SAMEA50499418 sequencing assay ERX1861024 PBMC-single9_S49_L001_R1_001.fastq.gz PBMC-single9_S49_L001_R1_001.fastq.gz ERR1797345 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797345/ERR1797345_1.fastq.gz 150 76 primary cell none PB-T cell 9 +PB-T cell 9 ERS1505447 SAMEA50499418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 9 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 9 SAMEA50499418 sequencing assay ERX1861024 PBMC-single9_S49_L001_R2_001.fastq.gz PBMC-single9_S49_L001_R2_001.fastq.gz ERR1797345 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797345/ERR1797345_2.fastq.gz 70 36 primary cell none PB-T cell 9 +PB-T cell 9 ERS1505447 SAMEA50499418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 9 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 9 SAMEA50499418 sequencing assay ERX1861024 PBMC-single9_S49_L002_R1_001.fastq.gz PBMC-single9_S49_L002_R1_001.fastq.gz ERR1797346 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797346/ERR1797346_1.fastq.gz 234 118 primary cell none PB-T cell 9 +PB-T cell 9 ERS1505447 SAMEA50499418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 9 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 9 SAMEA50499418 sequencing assay ERX1861024 PBMC-single9_S49_L002_R2_001.fastq.gz PBMC-single9_S49_L002_R2_001.fastq.gz ERR1797346 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797346/ERR1797346_2.fastq.gz 302 152 primary cell none PB-T cell 9 +PB-T cell 9 ERS1505447 SAMEA50499418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 9 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 9 SAMEA50499418 sequencing assay ERX1861024 PBMC-single9_S49_L003_R1_001.fastq.gz PBMC-single9_S49_L003_R1_001.fastq.gz ERR1797347 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797347/ERR1797347_1.fastq.gz 302 152 primary cell none PB-T cell 9 +PB-T cell 9 ERS1505447 SAMEA50499418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 9 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 9 SAMEA50499418 sequencing assay ERX1861024 PBMC-single9_S49_L003_R2_001.fastq.gz PBMC-single9_S49_L003_R2_001.fastq.gz ERR1797347 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797347/ERR1797347_2.fastq.gz 302 152 primary cell none PB-T cell 9 +PB-T cell 9 ERS1505447 SAMEA50499418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 9 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 9 SAMEA50499418 sequencing assay ERX1861024 PBMC-single9_S49_L004_R1_001.fastq.gz PBMC-single9_S49_L004_R1_001.fastq.gz ERR1797348 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797348/ERR1797348_1.fastq.gz 302 152 primary cell none PB-T cell 9 +PB-T cell 9 ERS1505447 SAMEA50499418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 9 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 9 SAMEA50499418 sequencing assay ERX1861024 PBMC-single9_S49_L004_R2_001.fastq.gz PBMC-single9_S49_L004_R2_001.fastq.gz ERR1797348 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797348/ERR1797348_2.fastq.gz 302 152 primary cell none PB-T cell 9 +PB-T cell 19 ERS1505448 SAMEA50500168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 10 cells not OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 19 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 19 SAMEA50500168 sequencing assay ERX1861025 PBMC-ten1_S59_L001_R1_001.fastq.gz PBMC-ten1_S59_L001_R1_001.fastq.gz ERR1797349 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797349/ERR1797349_1.fastq.gz 284 143 primary cell none PB-T cell 19 +PB-T cell 19 ERS1505448 SAMEA50500168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 10 cells not OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 19 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 19 SAMEA50500168 sequencing assay ERX1861025 PBMC-ten1_S59_L001_R2_001.fastq.gz PBMC-ten1_S59_L001_R2_001.fastq.gz ERR1797349 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797349/ERR1797349_2.fastq.gz 70 36 primary cell none PB-T cell 19 +PB-T cell 19 ERS1505448 SAMEA50500168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 10 cells not OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 19 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 19 SAMEA50500168 sequencing assay ERX1861025 PBMC-ten1_S59_L002_R1_001.fastq.gz PBMC-ten1_S59_L002_R1_001.fastq.gz ERR1797350 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797350/ERR1797350_1.fastq.gz 302 152 primary cell none PB-T cell 19 +PB-T cell 19 ERS1505448 SAMEA50500168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 10 cells not OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 19 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 19 SAMEA50500168 sequencing assay ERX1861025 PBMC-ten1_S59_L002_R2_001.fastq.gz PBMC-ten1_S59_L002_R2_001.fastq.gz ERR1797350 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797350/ERR1797350_2.fastq.gz 70 36 primary cell none PB-T cell 19 +PB-T cell 19 ERS1505448 SAMEA50500168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 10 cells not OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 19 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 19 SAMEA50500168 sequencing assay ERX1861025 PBMC-ten1_S59_L003_R1_001.fastq.gz PBMC-ten1_S59_L003_R1_001.fastq.gz ERR1797351 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797351/ERR1797351_1.fastq.gz 302 152 primary cell none PB-T cell 19 +PB-T cell 19 ERS1505448 SAMEA50500168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 10 cells not OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 19 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 19 SAMEA50500168 sequencing assay ERX1861025 PBMC-ten1_S59_L003_R2_001.fastq.gz PBMC-ten1_S59_L003_R2_001.fastq.gz ERR1797351 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797351/ERR1797351_2.fastq.gz 302 152 primary cell none PB-T cell 19 +PB-T cell 19 ERS1505448 SAMEA50500168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 10 cells not OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 19 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 19 SAMEA50500168 sequencing assay ERX1861025 PBMC-ten1_S59_L004_R1_001.fastq.gz PBMC-ten1_S59_L004_R1_001.fastq.gz ERR1797352 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797352/ERR1797352_1.fastq.gz 302 152 primary cell none PB-T cell 19 +PB-T cell 19 ERS1505448 SAMEA50500168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 10 cells not OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 19 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 19 SAMEA50500168 sequencing assay ERX1861025 PBMC-ten1_S59_L004_R2_001.fastq.gz PBMC-ten1_S59_L004_R2_001.fastq.gz ERR1797352 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797352/ERR1797352_2.fastq.gz 302 152 primary cell none PB-T cell 19 +PB-T cell 20 ERS1505449 SAMEA50500918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 10 cells not OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 20 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 20 SAMEA50500918 sequencing assay ERX1861026 PBMC-ten2_S60_L001_R1_001.fastq.gz PBMC-ten2_S60_L001_R1_001.fastq.gz ERR1797353 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797353/ERR1797353_1.fastq.gz 250 126 primary cell none PB-T cell 20 +PB-T cell 20 ERS1505449 SAMEA50500918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 10 cells not OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 20 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 20 SAMEA50500918 sequencing assay ERX1861026 PBMC-ten2_S60_L001_R2_001.fastq.gz PBMC-ten2_S60_L001_R2_001.fastq.gz ERR1797353 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797353/ERR1797353_2.fastq.gz 70 36 primary cell none PB-T cell 20 +PB-T cell 20 ERS1505449 SAMEA50500918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 10 cells not OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 20 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 20 SAMEA50500918 sequencing assay ERX1861026 PBMC-ten2_S60_L002_R1_001.fastq.gz PBMC-ten2_S60_L002_R1_001.fastq.gz ERR1797354 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797354/ERR1797354_1.fastq.gz 234 118 primary cell none PB-T cell 20 +PB-T cell 20 ERS1505449 SAMEA50500918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 10 cells not OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 20 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 20 SAMEA50500918 sequencing assay ERX1861026 PBMC-ten2_S60_L002_R2_001.fastq.gz PBMC-ten2_S60_L002_R2_001.fastq.gz ERR1797354 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797354/ERR1797354_2.fastq.gz 70 36 primary cell none PB-T cell 20 +PB-T cell 20 ERS1505449 SAMEA50500918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 10 cells not OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 20 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 20 SAMEA50500918 sequencing assay ERX1861026 PBMC-ten2_S60_L003_R1_001.fastq.gz PBMC-ten2_S60_L003_R1_001.fastq.gz ERR1797355 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797355/ERR1797355_1.fastq.gz 234 118 primary cell none PB-T cell 20 +PB-T cell 20 ERS1505449 SAMEA50500918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 10 cells not OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 20 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 20 SAMEA50500918 sequencing assay ERX1861026 PBMC-ten2_S60_L003_R2_001.fastq.gz PBMC-ten2_S60_L003_R2_001.fastq.gz ERR1797355 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797355/ERR1797355_2.fastq.gz 234 118 primary cell none PB-T cell 20 +PB-T cell 20 ERS1505449 SAMEA50500918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 10 cells not OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 20 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 20 SAMEA50500918 sequencing assay ERX1861026 PBMC-ten2_S60_L004_R1_001.fastq.gz PBMC-ten2_S60_L004_R1_001.fastq.gz ERR1797356 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797356/ERR1797356_1.fastq.gz 298 150 primary cell none PB-T cell 20 +PB-T cell 20 ERS1505449 SAMEA50500918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 10 cells not OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 20 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 20 SAMEA50500918 sequencing assay ERX1861026 PBMC-ten2_S60_L004_R2_001.fastq.gz PBMC-ten2_S60_L004_R2_001.fastq.gz ERR1797356 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797356/ERR1797356_2.fastq.gz 302 152 primary cell none PB-T cell 20 +CL-Stim 1 ERS1505450 SAMEA50501668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 1 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 1 SAMEA50501668 sequencing assay ERX1861027 Stim-single1_S1_L001_R1_001.fastq.gz Stim-single1_S1_L001_R1_001.fastq.gz ERR1797357 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797357/ERR1797357_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 1 +CL-Stim 1 ERS1505450 SAMEA50501668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 1 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 1 SAMEA50501668 sequencing assay ERX1861027 Stim-single1_S1_L001_R2_001.fastq.gz Stim-single1_S1_L001_R2_001.fastq.gz ERR1797357 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797357/ERR1797357_2.fastq.gz 70 36 immortal cell line cell CINGVCWTV peptide CL-Stim 1 +CL-Stim 1 ERS1505450 SAMEA50501668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 1 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 1 SAMEA50501668 sequencing assay ERX1861027 Stim-single1_S1_L002_R1_001.fastq.gz Stim-single1_S1_L002_R1_001.fastq.gz ERR1797358 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797358/ERR1797358_1.fastq.gz 236 119 immortal cell line cell CINGVCWTV peptide CL-Stim 1 +CL-Stim 1 ERS1505450 SAMEA50501668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 1 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 1 SAMEA50501668 sequencing assay ERX1861027 Stim-single1_S1_L002_R2_001.fastq.gz Stim-single1_S1_L002_R2_001.fastq.gz ERR1797358 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797358/ERR1797358_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 1 +CL-Stim 1 ERS1505450 SAMEA50501668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 1 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 1 SAMEA50501668 sequencing assay ERX1861027 Stim-single1_S1_L003_R1_001.fastq.gz Stim-single1_S1_L003_R1_001.fastq.gz ERR1797359 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797359/ERR1797359_1.fastq.gz 300 151 immortal cell line cell CINGVCWTV peptide CL-Stim 1 +CL-Stim 1 ERS1505450 SAMEA50501668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 1 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 1 SAMEA50501668 sequencing assay ERX1861027 Stim-single1_S1_L003_R2_001.fastq.gz Stim-single1_S1_L003_R2_001.fastq.gz ERR1797359 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797359/ERR1797359_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 1 +CL-Stim 1 ERS1505450 SAMEA50501668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 1 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 1 SAMEA50501668 sequencing assay ERX1861027 Stim-single1_S1_L004_R1_001.fastq.gz Stim-single1_S1_L004_R1_001.fastq.gz ERR1797360 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797360/ERR1797360_1.fastq.gz 300 151 immortal cell line cell CINGVCWTV peptide CL-Stim 1 +CL-Stim 1 ERS1505450 SAMEA50501668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 1 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 1 SAMEA50501668 sequencing assay ERX1861027 Stim-single1_S1_L004_R2_001.fastq.gz Stim-single1_S1_L004_R2_001.fastq.gz ERR1797360 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797360/ERR1797360_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 1 +CL-Stim 10 ERS1505451 SAMEA50502418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 10 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 10 SAMEA50502418 sequencing assay ERX1861028 Stim-single10_S10_L001_R1_001.fastq.gz Stim-single10_S10_L001_R1_001.fastq.gz ERR1797361 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797361/ERR1797361_1.fastq.gz 284 143 immortal cell line cell CINGVCWTV peptide CL-Stim 10 +CL-Stim 10 ERS1505451 SAMEA50502418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 10 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 10 SAMEA50502418 sequencing assay ERX1861028 Stim-single10_S10_L001_R2_001.fastq.gz Stim-single10_S10_L001_R2_001.fastq.gz ERR1797361 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797361/ERR1797361_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 10 +CL-Stim 10 ERS1505451 SAMEA50502418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 10 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 10 SAMEA50502418 sequencing assay ERX1861028 Stim-single10_S10_L002_R1_001.fastq.gz Stim-single10_S10_L002_R1_001.fastq.gz ERR1797362 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797362/ERR1797362_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 10 +CL-Stim 10 ERS1505451 SAMEA50502418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 10 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 10 SAMEA50502418 sequencing assay ERX1861028 Stim-single10_S10_L002_R2_001.fastq.gz Stim-single10_S10_L002_R2_001.fastq.gz ERR1797362 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797362/ERR1797362_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 10 +CL-Stim 10 ERS1505451 SAMEA50502418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 10 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 10 SAMEA50502418 sequencing assay ERX1861028 Stim-single10_S10_L003_R1_001.fastq.gz Stim-single10_S10_L003_R1_001.fastq.gz ERR1797363 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797363/ERR1797363_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 10 +CL-Stim 10 ERS1505451 SAMEA50502418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 10 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 10 SAMEA50502418 sequencing assay ERX1861028 Stim-single10_S10_L003_R2_001.fastq.gz Stim-single10_S10_L003_R2_001.fastq.gz ERR1797363 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797363/ERR1797363_2.fastq.gz 300 151 immortal cell line cell CINGVCWTV peptide CL-Stim 10 +CL-Stim 10 ERS1505451 SAMEA50502418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 10 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 10 SAMEA50502418 sequencing assay ERX1861028 Stim-single10_S10_L004_R1_001.fastq.gz Stim-single10_S10_L004_R1_001.fastq.gz ERR1797364 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797364/ERR1797364_1.fastq.gz 300 151 immortal cell line cell CINGVCWTV peptide CL-Stim 10 +CL-Stim 10 ERS1505451 SAMEA50502418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 10 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 10 SAMEA50502418 sequencing assay ERX1861028 Stim-single10_S10_L004_R2_001.fastq.gz Stim-single10_S10_L004_R2_001.fastq.gz ERR1797364 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797364/ERR1797364_2.fastq.gz 298 150 immortal cell line cell CINGVCWTV peptide CL-Stim 10 +CL-Stim 11 ERS1505452 SAMEA50503168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 11 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 11 SAMEA50503168 sequencing assay ERX1861029 Stim-single11_S11_L001_R1_001.fastq.gz Stim-single11_S11_L001_R1_001.fastq.gz ERR1797365 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797365/ERR1797365_1.fastq.gz 250 126 immortal cell line cell CINGVCWTV peptide CL-Stim 11 +CL-Stim 11 ERS1505452 SAMEA50503168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 11 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 11 SAMEA50503168 sequencing assay ERX1861029 Stim-single11_S11_L001_R2_001.fastq.gz Stim-single11_S11_L001_R2_001.fastq.gz ERR1797365 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797365/ERR1797365_2.fastq.gz 70 36 immortal cell line cell CINGVCWTV peptide CL-Stim 11 +CL-Stim 11 ERS1505452 SAMEA50503168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 11 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 11 SAMEA50503168 sequencing assay ERX1861029 Stim-single11_S11_L002_R1_001.fastq.gz Stim-single11_S11_L002_R1_001.fastq.gz ERR1797366 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797366/ERR1797366_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 11 +CL-Stim 11 ERS1505452 SAMEA50503168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 11 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 11 SAMEA50503168 sequencing assay ERX1861029 Stim-single11_S11_L002_R2_001.fastq.gz Stim-single11_S11_L002_R2_001.fastq.gz ERR1797366 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797366/ERR1797366_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 11 +CL-Stim 11 ERS1505452 SAMEA50503168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 11 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 11 SAMEA50503168 sequencing assay ERX1861029 Stim-single11_S11_L003_R1_001.fastq.gz Stim-single11_S11_L003_R1_001.fastq.gz ERR1797367 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797367/ERR1797367_1.fastq.gz 298 150 immortal cell line cell CINGVCWTV peptide CL-Stim 11 +CL-Stim 11 ERS1505452 SAMEA50503168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 11 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 11 SAMEA50503168 sequencing assay ERX1861029 Stim-single11_S11_L003_R2_001.fastq.gz Stim-single11_S11_L003_R2_001.fastq.gz ERR1797367 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797367/ERR1797367_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 11 +CL-Stim 11 ERS1505452 SAMEA50503168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 11 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 11 SAMEA50503168 sequencing assay ERX1861029 Stim-single11_S11_L004_R1_001.fastq.gz Stim-single11_S11_L004_R1_001.fastq.gz ERR1797368 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797368/ERR1797368_1.fastq.gz 298 150 immortal cell line cell CINGVCWTV peptide CL-Stim 11 +CL-Stim 11 ERS1505452 SAMEA50503168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 11 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 11 SAMEA50503168 sequencing assay ERX1861029 Stim-single11_S11_L004_R2_001.fastq.gz Stim-single11_S11_L004_R2_001.fastq.gz ERR1797368 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797368/ERR1797368_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 11 +CL-Stim 12 ERS1505453 SAMEA50503918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 12 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 12 SAMEA50503918 sequencing assay ERX1861030 Stim-single12_S12_L001_R1_001.fastq.gz Stim-single12_S12_L001_R1_001.fastq.gz ERR1797369 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797369/ERR1797369_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 12 +CL-Stim 12 ERS1505453 SAMEA50503918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 12 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 12 SAMEA50503918 sequencing assay ERX1861030 Stim-single12_S12_L001_R2_001.fastq.gz Stim-single12_S12_L001_R2_001.fastq.gz ERR1797369 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797369/ERR1797369_2.fastq.gz 70 36 immortal cell line cell CINGVCWTV peptide CL-Stim 12 +CL-Stim 12 ERS1505453 SAMEA50503918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 12 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 12 SAMEA50503918 sequencing assay ERX1861030 Stim-single12_S12_L002_R1_001.fastq.gz Stim-single12_S12_L002_R1_001.fastq.gz ERR1797370 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797370/ERR1797370_1.fastq.gz 228 115 immortal cell line cell CINGVCWTV peptide CL-Stim 12 +CL-Stim 12 ERS1505453 SAMEA50503918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 12 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 12 SAMEA50503918 sequencing assay ERX1861030 Stim-single12_S12_L002_R2_001.fastq.gz Stim-single12_S12_L002_R2_001.fastq.gz ERR1797370 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797370/ERR1797370_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 12 +CL-Stim 12 ERS1505453 SAMEA50503918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 12 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 12 SAMEA50503918 sequencing assay ERX1861030 Stim-single12_S12_L003_R1_001.fastq.gz Stim-single12_S12_L003_R1_001.fastq.gz ERR1797371 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797371/ERR1797371_1.fastq.gz 116 59 immortal cell line cell CINGVCWTV peptide CL-Stim 12 +CL-Stim 12 ERS1505453 SAMEA50503918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 12 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 12 SAMEA50503918 sequencing assay ERX1861030 Stim-single12_S12_L003_R2_001.fastq.gz Stim-single12_S12_L003_R2_001.fastq.gz ERR1797371 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797371/ERR1797371_2.fastq.gz 116 59 immortal cell line cell CINGVCWTV peptide CL-Stim 12 +CL-Stim 12 ERS1505453 SAMEA50503918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 12 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 12 SAMEA50503918 sequencing assay ERX1861030 Stim-single12_S12_L004_R1_001.fastq.gz Stim-single12_S12_L004_R1_001.fastq.gz ERR1797372 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797372/ERR1797372_1.fastq.gz 300 151 immortal cell line cell CINGVCWTV peptide CL-Stim 12 +CL-Stim 12 ERS1505453 SAMEA50503918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 12 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 12 SAMEA50503918 sequencing assay ERX1861030 Stim-single12_S12_L004_R2_001.fastq.gz Stim-single12_S12_L004_R2_001.fastq.gz ERR1797372 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797372/ERR1797372_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 12 +CL-Stim 13 ERS1505454 SAMEA50504668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 13 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 13 SAMEA50504668 sequencing assay ERX1861031 Stim-single13_S13_L001_R1_001.fastq.gz Stim-single13_S13_L001_R1_001.fastq.gz ERR1797373 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797373/ERR1797373_1.fastq.gz 280 141 immortal cell line cell CINGVCWTV peptide CL-Stim 13 +CL-Stim 13 ERS1505454 SAMEA50504668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 13 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 13 SAMEA50504668 sequencing assay ERX1861031 Stim-single13_S13_L001_R2_001.fastq.gz Stim-single13_S13_L001_R2_001.fastq.gz ERR1797373 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797373/ERR1797373_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 13 +CL-Stim 13 ERS1505454 SAMEA50504668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 13 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 13 SAMEA50504668 sequencing assay ERX1861031 Stim-single13_S13_L002_R1_001.fastq.gz Stim-single13_S13_L002_R1_001.fastq.gz ERR1797374 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797374/ERR1797374_1.fastq.gz 224 113 immortal cell line cell CINGVCWTV peptide CL-Stim 13 +CL-Stim 13 ERS1505454 SAMEA50504668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 13 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 13 SAMEA50504668 sequencing assay ERX1861031 Stim-single13_S13_L002_R2_001.fastq.gz Stim-single13_S13_L002_R2_001.fastq.gz ERR1797374 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797374/ERR1797374_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 13 +CL-Stim 13 ERS1505454 SAMEA50504668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 13 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 13 SAMEA50504668 sequencing assay ERX1861031 Stim-single13_S13_L003_R1_001.fastq.gz Stim-single13_S13_L003_R1_001.fastq.gz ERR1797375 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797375/ERR1797375_1.fastq.gz 300 151 immortal cell line cell CINGVCWTV peptide CL-Stim 13 +CL-Stim 13 ERS1505454 SAMEA50504668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 13 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 13 SAMEA50504668 sequencing assay ERX1861031 Stim-single13_S13_L003_R2_001.fastq.gz Stim-single13_S13_L003_R2_001.fastq.gz ERR1797375 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797375/ERR1797375_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 13 +CL-Stim 13 ERS1505454 SAMEA50504668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 13 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 13 SAMEA50504668 sequencing assay ERX1861031 Stim-single13_S13_L004_R1_001.fastq.gz Stim-single13_S13_L004_R1_001.fastq.gz ERR1797376 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797376/ERR1797376_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 13 +CL-Stim 13 ERS1505454 SAMEA50504668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 13 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 13 SAMEA50504668 sequencing assay ERX1861031 Stim-single13_S13_L004_R2_001.fastq.gz Stim-single13_S13_L004_R2_001.fastq.gz ERR1797376 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797376/ERR1797376_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 13 +CL-Stim 14 ERS1505455 SAMEA50505418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 14 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 14 SAMEA50505418 sequencing assay ERX1861032 Stim-single14_S14_L001_R1_001.fastq.gz Stim-single14_S14_L001_R1_001.fastq.gz ERR1797377 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797377/ERR1797377_1.fastq.gz 254 128 immortal cell line cell CINGVCWTV peptide CL-Stim 14 +CL-Stim 14 ERS1505455 SAMEA50505418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 14 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 14 SAMEA50505418 sequencing assay ERX1861032 Stim-single14_S14_L001_R2_001.fastq.gz Stim-single14_S14_L001_R2_001.fastq.gz ERR1797377 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797377/ERR1797377_2.fastq.gz 70 36 immortal cell line cell CINGVCWTV peptide CL-Stim 14 +CL-Stim 14 ERS1505455 SAMEA50505418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 14 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 14 SAMEA50505418 sequencing assay ERX1861032 Stim-single14_S14_L002_R1_001.fastq.gz Stim-single14_S14_L002_R1_001.fastq.gz ERR1797378 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797378/ERR1797378_1.fastq.gz 232 117 immortal cell line cell CINGVCWTV peptide CL-Stim 14 +CL-Stim 14 ERS1505455 SAMEA50505418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 14 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 14 SAMEA50505418 sequencing assay ERX1861032 Stim-single14_S14_L002_R2_001.fastq.gz Stim-single14_S14_L002_R2_001.fastq.gz ERR1797378 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797378/ERR1797378_2.fastq.gz 70 36 immortal cell line cell CINGVCWTV peptide CL-Stim 14 +CL-Stim 14 ERS1505455 SAMEA50505418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 14 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 14 SAMEA50505418 sequencing assay ERX1861032 Stim-single14_S14_L003_R1_001.fastq.gz Stim-single14_S14_L003_R1_001.fastq.gz ERR1797379 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797379/ERR1797379_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 14 +CL-Stim 14 ERS1505455 SAMEA50505418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 14 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 14 SAMEA50505418 sequencing assay ERX1861032 Stim-single14_S14_L003_R2_001.fastq.gz Stim-single14_S14_L003_R2_001.fastq.gz ERR1797379 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797379/ERR1797379_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 14 +CL-Stim 14 ERS1505455 SAMEA50505418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 14 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 14 SAMEA50505418 sequencing assay ERX1861032 Stim-single14_S14_L004_R1_001.fastq.gz Stim-single14_S14_L004_R1_001.fastq.gz ERR1797380 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797380/ERR1797380_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 14 +CL-Stim 14 ERS1505455 SAMEA50505418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 14 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 14 SAMEA50505418 sequencing assay ERX1861032 Stim-single14_S14_L004_R2_001.fastq.gz Stim-single14_S14_L004_R2_001.fastq.gz ERR1797380 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797380/ERR1797380_2.fastq.gz 300 151 immortal cell line cell CINGVCWTV peptide CL-Stim 14 +CL-Stim 15 ERS1505456 SAMEA50506168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 15 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 15 SAMEA50506168 sequencing assay ERX1861033 Stim-single15_S15_L001_R1_001.fastq.gz Stim-single15_S15_L001_R1_001.fastq.gz ERR1797381 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797381/ERR1797381_1.fastq.gz 254 128 immortal cell line cell CINGVCWTV peptide CL-Stim 15 +CL-Stim 15 ERS1505456 SAMEA50506168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 15 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 15 SAMEA50506168 sequencing assay ERX1861033 Stim-single15_S15_L001_R2_001.fastq.gz Stim-single15_S15_L001_R2_001.fastq.gz ERR1797381 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797381/ERR1797381_2.fastq.gz 70 36 immortal cell line cell CINGVCWTV peptide CL-Stim 15 +CL-Stim 15 ERS1505456 SAMEA50506168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 15 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 15 SAMEA50506168 sequencing assay ERX1861033 Stim-single15_S15_L002_R1_001.fastq.gz Stim-single15_S15_L002_R1_001.fastq.gz ERR1797382 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797382/ERR1797382_1.fastq.gz 250 126 immortal cell line cell CINGVCWTV peptide CL-Stim 15 +CL-Stim 15 ERS1505456 SAMEA50506168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 15 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 15 SAMEA50506168 sequencing assay ERX1861033 Stim-single15_S15_L002_R2_001.fastq.gz Stim-single15_S15_L002_R2_001.fastq.gz ERR1797382 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797382/ERR1797382_2.fastq.gz 70 36 immortal cell line cell CINGVCWTV peptide CL-Stim 15 +CL-Stim 15 ERS1505456 SAMEA50506168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 15 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 15 SAMEA50506168 sequencing assay ERX1861033 Stim-single15_S15_L003_R1_001.fastq.gz Stim-single15_S15_L003_R1_001.fastq.gz ERR1797383 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797383/ERR1797383_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 15 +CL-Stim 15 ERS1505456 SAMEA50506168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 15 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 15 SAMEA50506168 sequencing assay ERX1861033 Stim-single15_S15_L003_R2_001.fastq.gz Stim-single15_S15_L003_R2_001.fastq.gz ERR1797383 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797383/ERR1797383_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 15 +CL-Stim 15 ERS1505456 SAMEA50506168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 15 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 15 SAMEA50506168 sequencing assay ERX1861033 Stim-single15_S15_L004_R1_001.fastq.gz Stim-single15_S15_L004_R1_001.fastq.gz ERR1797384 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797384/ERR1797384_1.fastq.gz 300 151 immortal cell line cell CINGVCWTV peptide CL-Stim 15 +CL-Stim 15 ERS1505456 SAMEA50506168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 15 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 15 SAMEA50506168 sequencing assay ERX1861033 Stim-single15_S15_L004_R2_001.fastq.gz Stim-single15_S15_L004_R2_001.fastq.gz ERR1797384 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797384/ERR1797384_2.fastq.gz 300 151 immortal cell line cell CINGVCWTV peptide CL-Stim 15 +CL-Stim 16 ERS1505457 SAMEA50506918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 16 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 16 SAMEA50506918 sequencing assay ERX1861034 Stim-single16_S16_L001_R1_001.fastq.gz Stim-single16_S16_L001_R1_001.fastq.gz ERR1797385 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797385/ERR1797385_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 16 +CL-Stim 16 ERS1505457 SAMEA50506918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 16 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 16 SAMEA50506918 sequencing assay ERX1861034 Stim-single16_S16_L001_R2_001.fastq.gz Stim-single16_S16_L001_R2_001.fastq.gz ERR1797385 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797385/ERR1797385_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 16 +CL-Stim 16 ERS1505457 SAMEA50506918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 16 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 16 SAMEA50506918 sequencing assay ERX1861034 Stim-single16_S16_L002_R1_001.fastq.gz Stim-single16_S16_L002_R1_001.fastq.gz ERR1797386 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797386/ERR1797386_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 16 +CL-Stim 16 ERS1505457 SAMEA50506918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 16 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 16 SAMEA50506918 sequencing assay ERX1861034 Stim-single16_S16_L002_R2_001.fastq.gz Stim-single16_S16_L002_R2_001.fastq.gz ERR1797386 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797386/ERR1797386_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 16 +CL-Stim 16 ERS1505457 SAMEA50506918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 16 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 16 SAMEA50506918 sequencing assay ERX1861034 Stim-single16_S16_L003_R1_001.fastq.gz Stim-single16_S16_L003_R1_001.fastq.gz ERR1797387 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797387/ERR1797387_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 16 +CL-Stim 16 ERS1505457 SAMEA50506918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 16 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 16 SAMEA50506918 sequencing assay ERX1861034 Stim-single16_S16_L003_R2_001.fastq.gz Stim-single16_S16_L003_R2_001.fastq.gz ERR1797387 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797387/ERR1797387_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 16 +CL-Stim 16 ERS1505457 SAMEA50506918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 16 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 16 SAMEA50506918 sequencing assay ERX1861034 Stim-single16_S16_L004_R1_001.fastq.gz Stim-single16_S16_L004_R1_001.fastq.gz ERR1797388 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797388/ERR1797388_1.fastq.gz 272 137 immortal cell line cell CINGVCWTV peptide CL-Stim 16 +CL-Stim 16 ERS1505457 SAMEA50506918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 16 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 16 SAMEA50506918 sequencing assay ERX1861034 Stim-single16_S16_L004_R2_001.fastq.gz Stim-single16_S16_L004_R2_001.fastq.gz ERR1797388 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797388/ERR1797388_2.fastq.gz 272 137 immortal cell line cell CINGVCWTV peptide CL-Stim 16 +CL-Stim 17 ERS1505458 SAMEA50507668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 17 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 17 SAMEA50507668 sequencing assay ERX1861035 Stim-single17_S17_L001_R1_001.fastq.gz Stim-single17_S17_L001_R1_001.fastq.gz ERR1797389 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797389/ERR1797389_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 17 +CL-Stim 17 ERS1505458 SAMEA50507668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 17 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 17 SAMEA50507668 sequencing assay ERX1861035 Stim-single17_S17_L001_R2_001.fastq.gz Stim-single17_S17_L001_R2_001.fastq.gz ERR1797389 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797389/ERR1797389_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 17 +CL-Stim 17 ERS1505458 SAMEA50507668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 17 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 17 SAMEA50507668 sequencing assay ERX1861035 Stim-single17_S17_L002_R1_001.fastq.gz Stim-single17_S17_L002_R1_001.fastq.gz ERR1797390 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797390/ERR1797390_1.fastq.gz 254 128 immortal cell line cell CINGVCWTV peptide CL-Stim 17 +CL-Stim 17 ERS1505458 SAMEA50507668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 17 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 17 SAMEA50507668 sequencing assay ERX1861035 Stim-single17_S17_L002_R2_001.fastq.gz Stim-single17_S17_L002_R2_001.fastq.gz ERR1797390 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797390/ERR1797390_2.fastq.gz 70 36 immortal cell line cell CINGVCWTV peptide CL-Stim 17 +CL-Stim 17 ERS1505458 SAMEA50507668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 17 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 17 SAMEA50507668 sequencing assay ERX1861035 Stim-single17_S17_L003_R1_001.fastq.gz Stim-single17_S17_L003_R1_001.fastq.gz ERR1797391 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797391/ERR1797391_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 17 +CL-Stim 17 ERS1505458 SAMEA50507668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 17 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 17 SAMEA50507668 sequencing assay ERX1861035 Stim-single17_S17_L003_R2_001.fastq.gz Stim-single17_S17_L003_R2_001.fastq.gz ERR1797391 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797391/ERR1797391_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 17 +CL-Stim 17 ERS1505458 SAMEA50507668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 17 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 17 SAMEA50507668 sequencing assay ERX1861035 Stim-single17_S17_L004_R1_001.fastq.gz Stim-single17_S17_L004_R1_001.fastq.gz ERR1797392 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797392/ERR1797392_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 17 +CL-Stim 17 ERS1505458 SAMEA50507668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 17 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 17 SAMEA50507668 sequencing assay ERX1861035 Stim-single17_S17_L004_R2_001.fastq.gz Stim-single17_S17_L004_R2_001.fastq.gz ERR1797392 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797392/ERR1797392_2.fastq.gz 298 150 immortal cell line cell CINGVCWTV peptide CL-Stim 17 +CL-Stim 18 ERS1505459 SAMEA50508418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 18 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 18 SAMEA50508418 sequencing assay ERX1861036 Stim-single18_S18_L001_R1_001.fastq.gz Stim-single18_S18_L001_R1_001.fastq.gz ERR1797393 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797393/ERR1797393_1.fastq.gz 278 140 immortal cell line cell CINGVCWTV peptide CL-Stim 18 +CL-Stim 18 ERS1505459 SAMEA50508418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 18 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 18 SAMEA50508418 sequencing assay ERX1861036 Stim-single18_S18_L001_R2_001.fastq.gz Stim-single18_S18_L001_R2_001.fastq.gz ERR1797393 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797393/ERR1797393_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 18 +CL-Stim 18 ERS1505459 SAMEA50508418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 18 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 18 SAMEA50508418 sequencing assay ERX1861036 Stim-single18_S18_L002_R1_001.fastq.gz Stim-single18_S18_L002_R1_001.fastq.gz ERR1797394 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797394/ERR1797394_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 18 +CL-Stim 18 ERS1505459 SAMEA50508418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 18 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 18 SAMEA50508418 sequencing assay ERX1861036 Stim-single18_S18_L002_R2_001.fastq.gz Stim-single18_S18_L002_R2_001.fastq.gz ERR1797394 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797394/ERR1797394_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 18 +CL-Stim 18 ERS1505459 SAMEA50508418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 18 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 18 SAMEA50508418 sequencing assay ERX1861036 Stim-single18_S18_L003_R1_001.fastq.gz Stim-single18_S18_L003_R1_001.fastq.gz ERR1797395 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797395/ERR1797395_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 18 +CL-Stim 18 ERS1505459 SAMEA50508418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 18 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 18 SAMEA50508418 sequencing assay ERX1861036 Stim-single18_S18_L003_R2_001.fastq.gz Stim-single18_S18_L003_R2_001.fastq.gz ERR1797395 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797395/ERR1797395_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 18 +CL-Stim 18 ERS1505459 SAMEA50508418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 18 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 18 SAMEA50508418 sequencing assay ERX1861036 Stim-single18_S18_L004_R1_001.fastq.gz Stim-single18_S18_L004_R1_001.fastq.gz ERR1797396 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797396/ERR1797396_1.fastq.gz 156 79 immortal cell line cell CINGVCWTV peptide CL-Stim 18 +CL-Stim 18 ERS1505459 SAMEA50508418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 18 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 18 SAMEA50508418 sequencing assay ERX1861036 Stim-single18_S18_L004_R2_001.fastq.gz Stim-single18_S18_L004_R2_001.fastq.gz ERR1797396 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797396/ERR1797396_2.fastq.gz 156 79 immortal cell line cell CINGVCWTV peptide CL-Stim 18 +CL-Stim 2 ERS1505460 SAMEA50509168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 2 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 2 SAMEA50509168 sequencing assay ERX1861037 Stim-single2_S2_L001_R1_001.fastq.gz Stim-single2_S2_L001_R1_001.fastq.gz ERR1797397 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797397/ERR1797397_1.fastq.gz 252 127 immortal cell line cell CINGVCWTV peptide CL-Stim 2 +CL-Stim 2 ERS1505460 SAMEA50509168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 2 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 2 SAMEA50509168 sequencing assay ERX1861037 Stim-single2_S2_L001_R2_001.fastq.gz Stim-single2_S2_L001_R2_001.fastq.gz ERR1797397 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797397/ERR1797397_2.fastq.gz 70 36 immortal cell line cell CINGVCWTV peptide CL-Stim 2 +CL-Stim 2 ERS1505460 SAMEA50509168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 2 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 2 SAMEA50509168 sequencing assay ERX1861037 Stim-single2_S2_L002_R1_001.fastq.gz Stim-single2_S2_L002_R1_001.fastq.gz ERR1797398 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797398/ERR1797398_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 2 +CL-Stim 2 ERS1505460 SAMEA50509168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 2 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 2 SAMEA50509168 sequencing assay ERX1861037 Stim-single2_S2_L002_R2_001.fastq.gz Stim-single2_S2_L002_R2_001.fastq.gz ERR1797398 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797398/ERR1797398_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 2 +CL-Stim 2 ERS1505460 SAMEA50509168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 2 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 2 SAMEA50509168 sequencing assay ERX1861037 Stim-single2_S2_L003_R1_001.fastq.gz Stim-single2_S2_L003_R1_001.fastq.gz ERR1797399 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797399/ERR1797399_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 2 +CL-Stim 2 ERS1505460 SAMEA50509168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 2 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 2 SAMEA50509168 sequencing assay ERX1861037 Stim-single2_S2_L003_R2_001.fastq.gz Stim-single2_S2_L003_R2_001.fastq.gz ERR1797399 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797399/ERR1797399_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 2 +CL-Stim 2 ERS1505460 SAMEA50509168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 2 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 2 SAMEA50509168 sequencing assay ERX1861037 Stim-single2_S2_L004_R1_001.fastq.gz Stim-single2_S2_L004_R1_001.fastq.gz ERR1797400 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797400/ERR1797400_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 2 +CL-Stim 2 ERS1505460 SAMEA50509168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 2 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 2 SAMEA50509168 sequencing assay ERX1861037 Stim-single2_S2_L004_R2_001.fastq.gz Stim-single2_S2_L004_R2_001.fastq.gz ERR1797400 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797400/ERR1797400_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 2 +CL-Stim 3 ERS1505461 SAMEA50509918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 3 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 3 SAMEA50509918 sequencing assay ERX1861038 Stim-single3_S3_L001_R1_001.fastq.gz Stim-single3_S3_L001_R1_001.fastq.gz ERR1797401 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797401/ERR1797401_1.fastq.gz 254 128 immortal cell line cell CINGVCWTV peptide CL-Stim 3 +CL-Stim 3 ERS1505461 SAMEA50509918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 3 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 3 SAMEA50509918 sequencing assay ERX1861038 Stim-single3_S3_L001_R2_001.fastq.gz Stim-single3_S3_L001_R2_001.fastq.gz ERR1797401 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797401/ERR1797401_2.fastq.gz 70 36 immortal cell line cell CINGVCWTV peptide CL-Stim 3 +CL-Stim 3 ERS1505461 SAMEA50509918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 3 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 3 SAMEA50509918 sequencing assay ERX1861038 Stim-single3_S3_L002_R1_001.fastq.gz Stim-single3_S3_L002_R1_001.fastq.gz ERR1797402 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797402/ERR1797402_1.fastq.gz 262 132 immortal cell line cell CINGVCWTV peptide CL-Stim 3 +CL-Stim 3 ERS1505461 SAMEA50509918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 3 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 3 SAMEA50509918 sequencing assay ERX1861038 Stim-single3_S3_L002_R2_001.fastq.gz Stim-single3_S3_L002_R2_001.fastq.gz ERR1797402 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797402/ERR1797402_2.fastq.gz 70 36 immortal cell line cell CINGVCWTV peptide CL-Stim 3 +CL-Stim 3 ERS1505461 SAMEA50509918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 3 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 3 SAMEA50509918 sequencing assay ERX1861038 Stim-single3_S3_L003_R1_001.fastq.gz Stim-single3_S3_L003_R1_001.fastq.gz ERR1797403 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797403/ERR1797403_1.fastq.gz 196 99 immortal cell line cell CINGVCWTV peptide CL-Stim 3 +CL-Stim 3 ERS1505461 SAMEA50509918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 3 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 3 SAMEA50509918 sequencing assay ERX1861038 Stim-single3_S3_L003_R2_001.fastq.gz Stim-single3_S3_L003_R2_001.fastq.gz ERR1797403 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797403/ERR1797403_2.fastq.gz 196 99 immortal cell line cell CINGVCWTV peptide CL-Stim 3 +CL-Stim 3 ERS1505461 SAMEA50509918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 3 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 3 SAMEA50509918 sequencing assay ERX1861038 Stim-single3_S3_L004_R1_001.fastq.gz Stim-single3_S3_L004_R1_001.fastq.gz ERR1797404 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797404/ERR1797404_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 3 +CL-Stim 3 ERS1505461 SAMEA50509918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 3 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 3 SAMEA50509918 sequencing assay ERX1861038 Stim-single3_S3_L004_R2_001.fastq.gz Stim-single3_S3_L004_R2_001.fastq.gz ERR1797404 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797404/ERR1797404_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 3 +CL-Stim 4 ERS1505462 SAMEA50510668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 4 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 4 SAMEA50510668 sequencing assay ERX1861039 Stim-single4_S4_L001_R1_001.fastq.gz Stim-single4_S4_L001_R1_001.fastq.gz ERR1797405 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797405/ERR1797405_1.fastq.gz 256 129 immortal cell line cell CINGVCWTV peptide CL-Stim 4 +CL-Stim 4 ERS1505462 SAMEA50510668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 4 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 4 SAMEA50510668 sequencing assay ERX1861039 Stim-single4_S4_L001_R2_001.fastq.gz Stim-single4_S4_L001_R2_001.fastq.gz ERR1797405 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797405/ERR1797405_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 4 +CL-Stim 4 ERS1505462 SAMEA50510668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 4 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 4 SAMEA50510668 sequencing assay ERX1861039 Stim-single4_S4_L002_R1_001.fastq.gz Stim-single4_S4_L002_R1_001.fastq.gz ERR1797406 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797406/ERR1797406_1.fastq.gz 224 113 immortal cell line cell CINGVCWTV peptide CL-Stim 4 +CL-Stim 4 ERS1505462 SAMEA50510668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 4 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 4 SAMEA50510668 sequencing assay ERX1861039 Stim-single4_S4_L002_R2_001.fastq.gz Stim-single4_S4_L002_R2_001.fastq.gz ERR1797406 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797406/ERR1797406_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 4 +CL-Stim 4 ERS1505462 SAMEA50510668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 4 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 4 SAMEA50510668 sequencing assay ERX1861039 Stim-single4_S4_L003_R1_001.fastq.gz Stim-single4_S4_L003_R1_001.fastq.gz ERR1797407 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797407/ERR1797407_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 4 +CL-Stim 4 ERS1505462 SAMEA50510668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 4 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 4 SAMEA50510668 sequencing assay ERX1861039 Stim-single4_S4_L003_R2_001.fastq.gz Stim-single4_S4_L003_R2_001.fastq.gz ERR1797407 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797407/ERR1797407_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 4 +CL-Stim 4 ERS1505462 SAMEA50510668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 4 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 4 SAMEA50510668 sequencing assay ERX1861039 Stim-single4_S4_L004_R1_001.fastq.gz Stim-single4_S4_L004_R1_001.fastq.gz ERR1797408 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797408/ERR1797408_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 4 +CL-Stim 4 ERS1505462 SAMEA50510668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 4 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 4 SAMEA50510668 sequencing assay ERX1861039 Stim-single4_S4_L004_R2_001.fastq.gz Stim-single4_S4_L004_R2_001.fastq.gz ERR1797408 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797408/ERR1797408_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 4 +CL-Stim 5 ERS1505463 SAMEA50511418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 5 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 5 SAMEA50511418 sequencing assay ERX1861040 Stim-single5_S5_L001_R1_001.fastq.gz Stim-single5_S5_L001_R1_001.fastq.gz ERR1797409 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797409/ERR1797409_1.fastq.gz 250 126 immortal cell line cell CINGVCWTV peptide CL-Stim 5 +CL-Stim 5 ERS1505463 SAMEA50511418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 5 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 5 SAMEA50511418 sequencing assay ERX1861040 Stim-single5_S5_L001_R2_001.fastq.gz Stim-single5_S5_L001_R2_001.fastq.gz ERR1797409 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797409/ERR1797409_2.fastq.gz 70 36 immortal cell line cell CINGVCWTV peptide CL-Stim 5 +CL-Stim 5 ERS1505463 SAMEA50511418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 5 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 5 SAMEA50511418 sequencing assay ERX1861040 Stim-single5_S5_L002_R1_001.fastq.gz Stim-single5_S5_L002_R1_001.fastq.gz ERR1797410 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797410/ERR1797410_1.fastq.gz 226 114 immortal cell line cell CINGVCWTV peptide CL-Stim 5 +CL-Stim 5 ERS1505463 SAMEA50511418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 5 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 5 SAMEA50511418 sequencing assay ERX1861040 Stim-single5_S5_L002_R2_001.fastq.gz Stim-single5_S5_L002_R2_001.fastq.gz ERR1797410 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797410/ERR1797410_2.fastq.gz 70 36 immortal cell line cell CINGVCWTV peptide CL-Stim 5 +CL-Stim 5 ERS1505463 SAMEA50511418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 5 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 5 SAMEA50511418 sequencing assay ERX1861040 Stim-single5_S5_L003_R1_001.fastq.gz Stim-single5_S5_L003_R1_001.fastq.gz ERR1797411 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797411/ERR1797411_1.fastq.gz 300 151 immortal cell line cell CINGVCWTV peptide CL-Stim 5 +CL-Stim 5 ERS1505463 SAMEA50511418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 5 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 5 SAMEA50511418 sequencing assay ERX1861040 Stim-single5_S5_L003_R2_001.fastq.gz Stim-single5_S5_L003_R2_001.fastq.gz ERR1797411 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797411/ERR1797411_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 5 +CL-Stim 5 ERS1505463 SAMEA50511418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 5 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 5 SAMEA50511418 sequencing assay ERX1861040 Stim-single5_S5_L004_R1_001.fastq.gz Stim-single5_S5_L004_R1_001.fastq.gz ERR1797412 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797412/ERR1797412_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 5 +CL-Stim 5 ERS1505463 SAMEA50511418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 5 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 5 SAMEA50511418 sequencing assay ERX1861040 Stim-single5_S5_L004_R2_001.fastq.gz Stim-single5_S5_L004_R2_001.fastq.gz ERR1797412 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797412/ERR1797412_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 5 +CL-Stim 6 ERS1505464 SAMEA50512168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 6 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 6 SAMEA50512168 sequencing assay ERX1861041 Stim-single6_S6_L001_R1_001.fastq.gz Stim-single6_S6_L001_R1_001.fastq.gz ERR1797413 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797413/ERR1797413_1.fastq.gz 252 127 immortal cell line cell CINGVCWTV peptide CL-Stim 6 +CL-Stim 6 ERS1505464 SAMEA50512168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 6 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 6 SAMEA50512168 sequencing assay ERX1861041 Stim-single6_S6_L001_R2_001.fastq.gz Stim-single6_S6_L001_R2_001.fastq.gz ERR1797413 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797413/ERR1797413_2.fastq.gz 70 36 immortal cell line cell CINGVCWTV peptide CL-Stim 6 +CL-Stim 6 ERS1505464 SAMEA50512168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 6 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 6 SAMEA50512168 sequencing assay ERX1861041 Stim-single6_S6_L002_R1_001.fastq.gz Stim-single6_S6_L002_R1_001.fastq.gz ERR1797414 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797414/ERR1797414_1.fastq.gz 212 107 immortal cell line cell CINGVCWTV peptide CL-Stim 6 +CL-Stim 6 ERS1505464 SAMEA50512168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 6 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 6 SAMEA50512168 sequencing assay ERX1861041 Stim-single6_S6_L002_R2_001.fastq.gz Stim-single6_S6_L002_R2_001.fastq.gz ERR1797414 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797414/ERR1797414_2.fastq.gz 70 36 immortal cell line cell CINGVCWTV peptide CL-Stim 6 +CL-Stim 6 ERS1505464 SAMEA50512168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 6 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 6 SAMEA50512168 sequencing assay ERX1861041 Stim-single6_S6_L003_R1_001.fastq.gz Stim-single6_S6_L003_R1_001.fastq.gz ERR1797415 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797415/ERR1797415_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 6 +CL-Stim 6 ERS1505464 SAMEA50512168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 6 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 6 SAMEA50512168 sequencing assay ERX1861041 Stim-single6_S6_L003_R2_001.fastq.gz Stim-single6_S6_L003_R2_001.fastq.gz ERR1797415 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797415/ERR1797415_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 6 +CL-Stim 6 ERS1505464 SAMEA50512168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 6 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 6 SAMEA50512168 sequencing assay ERX1861041 Stim-single6_S6_L004_R1_001.fastq.gz Stim-single6_S6_L004_R1_001.fastq.gz ERR1797416 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797416/ERR1797416_1.fastq.gz 298 150 immortal cell line cell CINGVCWTV peptide CL-Stim 6 +CL-Stim 6 ERS1505464 SAMEA50512168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 6 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 6 SAMEA50512168 sequencing assay ERX1861041 Stim-single6_S6_L004_R2_001.fastq.gz Stim-single6_S6_L004_R2_001.fastq.gz ERR1797416 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797416/ERR1797416_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 6 +CL-Stim 7 ERS1505465 SAMEA50512918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 7 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 7 SAMEA50512918 sequencing assay ERX1861042 Stim-single7_S7_L001_R1_001.fastq.gz Stim-single7_S7_L001_R1_001.fastq.gz ERR1797417 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797417/ERR1797417_1.fastq.gz 276 139 immortal cell line cell CINGVCWTV peptide CL-Stim 7 +CL-Stim 7 ERS1505465 SAMEA50512918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 7 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 7 SAMEA50512918 sequencing assay ERX1861042 Stim-single7_S7_L001_R2_001.fastq.gz Stim-single7_S7_L001_R2_001.fastq.gz ERR1797417 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797417/ERR1797417_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 7 +CL-Stim 7 ERS1505465 SAMEA50512918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 7 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 7 SAMEA50512918 sequencing assay ERX1861042 Stim-single7_S7_L002_R1_001.fastq.gz Stim-single7_S7_L002_R1_001.fastq.gz ERR1797418 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797418/ERR1797418_1.fastq.gz 234 118 immortal cell line cell CINGVCWTV peptide CL-Stim 7 +CL-Stim 7 ERS1505465 SAMEA50512918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 7 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 7 SAMEA50512918 sequencing assay ERX1861042 Stim-single7_S7_L002_R2_001.fastq.gz Stim-single7_S7_L002_R2_001.fastq.gz ERR1797418 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797418/ERR1797418_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 7 +CL-Stim 7 ERS1505465 SAMEA50512918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 7 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 7 SAMEA50512918 sequencing assay ERX1861042 Stim-single7_S7_L003_R1_001.fastq.gz Stim-single7_S7_L003_R1_001.fastq.gz ERR1797419 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797419/ERR1797419_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 7 +CL-Stim 7 ERS1505465 SAMEA50512918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 7 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 7 SAMEA50512918 sequencing assay ERX1861042 Stim-single7_S7_L003_R2_001.fastq.gz Stim-single7_S7_L003_R2_001.fastq.gz ERR1797419 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797419/ERR1797419_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 7 +CL-Stim 7 ERS1505465 SAMEA50512918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 7 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 7 SAMEA50512918 sequencing assay ERX1861042 Stim-single7_S7_L004_R1_001.fastq.gz Stim-single7_S7_L004_R1_001.fastq.gz ERR1797420 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797420/ERR1797420_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 7 +CL-Stim 7 ERS1505465 SAMEA50512918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 7 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 7 SAMEA50512918 sequencing assay ERX1861042 Stim-single7_S7_L004_R2_001.fastq.gz Stim-single7_S7_L004_R2_001.fastq.gz ERR1797420 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797420/ERR1797420_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 7 +CL-Stim 8 ERS1505466 SAMEA50513668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 8 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 8 SAMEA50513668 sequencing assay ERX1861043 Stim-single8_S8_L001_R1_001.fastq.gz Stim-single8_S8_L001_R1_001.fastq.gz ERR1797421 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797421/ERR1797421_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 8 +CL-Stim 8 ERS1505466 SAMEA50513668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 8 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 8 SAMEA50513668 sequencing assay ERX1861043 Stim-single8_S8_L001_R2_001.fastq.gz Stim-single8_S8_L001_R2_001.fastq.gz ERR1797421 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797421/ERR1797421_2.fastq.gz 70 36 immortal cell line cell CINGVCWTV peptide CL-Stim 8 +CL-Stim 8 ERS1505466 SAMEA50513668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 8 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 8 SAMEA50513668 sequencing assay ERX1861043 Stim-single8_S8_L002_R1_001.fastq.gz Stim-single8_S8_L002_R1_001.fastq.gz ERR1797422 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797422/ERR1797422_1.fastq.gz 236 119 immortal cell line cell CINGVCWTV peptide CL-Stim 8 +CL-Stim 8 ERS1505466 SAMEA50513668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 8 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 8 SAMEA50513668 sequencing assay ERX1861043 Stim-single8_S8_L002_R2_001.fastq.gz Stim-single8_S8_L002_R2_001.fastq.gz ERR1797422 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797422/ERR1797422_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 8 +CL-Stim 8 ERS1505466 SAMEA50513668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 8 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 8 SAMEA50513668 sequencing assay ERX1861043 Stim-single8_S8_L003_R1_001.fastq.gz Stim-single8_S8_L003_R1_001.fastq.gz ERR1797423 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797423/ERR1797423_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 8 +CL-Stim 8 ERS1505466 SAMEA50513668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 8 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 8 SAMEA50513668 sequencing assay ERX1861043 Stim-single8_S8_L003_R2_001.fastq.gz Stim-single8_S8_L003_R2_001.fastq.gz ERR1797423 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797423/ERR1797423_2.fastq.gz 300 151 immortal cell line cell CINGVCWTV peptide CL-Stim 8 +CL-Stim 8 ERS1505466 SAMEA50513668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 8 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 8 SAMEA50513668 sequencing assay ERX1861043 Stim-single8_S8_L004_R1_001.fastq.gz Stim-single8_S8_L004_R1_001.fastq.gz ERR1797424 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797424/ERR1797424_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 8 +CL-Stim 8 ERS1505466 SAMEA50513668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 8 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 8 SAMEA50513668 sequencing assay ERX1861043 Stim-single8_S8_L004_R2_001.fastq.gz Stim-single8_S8_L004_R2_001.fastq.gz ERR1797424 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797424/ERR1797424_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 8 +CL-Stim 9 ERS1505467 SAMEA50514418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 9 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 9 SAMEA50514418 sequencing assay ERX1861044 Stim-single9_S9_L001_R1_001.fastq.gz Stim-single9_S9_L001_R1_001.fastq.gz ERR1797425 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797425/ERR1797425_1.fastq.gz 250 126 immortal cell line cell CINGVCWTV peptide CL-Stim 9 +CL-Stim 9 ERS1505467 SAMEA50514418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 9 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 9 SAMEA50514418 sequencing assay ERX1861044 Stim-single9_S9_L001_R2_001.fastq.gz Stim-single9_S9_L001_R2_001.fastq.gz ERR1797425 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797425/ERR1797425_2.fastq.gz 70 36 immortal cell line cell CINGVCWTV peptide CL-Stim 9 +CL-Stim 9 ERS1505467 SAMEA50514418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 9 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 9 SAMEA50514418 sequencing assay ERX1861044 Stim-single9_S9_L002_R1_001.fastq.gz Stim-single9_S9_L002_R1_001.fastq.gz ERR1797426 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797426/ERR1797426_1.fastq.gz 226 114 immortal cell line cell CINGVCWTV peptide CL-Stim 9 +CL-Stim 9 ERS1505467 SAMEA50514418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 9 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 9 SAMEA50514418 sequencing assay ERX1861044 Stim-single9_S9_L002_R2_001.fastq.gz Stim-single9_S9_L002_R2_001.fastq.gz ERR1797426 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797426/ERR1797426_2.fastq.gz 70 36 immortal cell line cell CINGVCWTV peptide CL-Stim 9 +CL-Stim 9 ERS1505467 SAMEA50514418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 9 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 9 SAMEA50514418 sequencing assay ERX1861044 Stim-single9_S9_L003_R1_001.fastq.gz Stim-single9_S9_L003_R1_001.fastq.gz ERR1797427 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797427/ERR1797427_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 9 +CL-Stim 9 ERS1505467 SAMEA50514418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 9 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 9 SAMEA50514418 sequencing assay ERX1861044 Stim-single9_S9_L003_R2_001.fastq.gz Stim-single9_S9_L003_R2_001.fastq.gz ERR1797427 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797427/ERR1797427_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 9 +CL-Stim 9 ERS1505467 SAMEA50514418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 9 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 9 SAMEA50514418 sequencing assay ERX1861044 Stim-single9_S9_L004_R1_001.fastq.gz Stim-single9_S9_L004_R1_001.fastq.gz ERR1797428 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797428/ERR1797428_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 9 +CL-Stim 9 ERS1505467 SAMEA50514418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 9 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 9 SAMEA50514418 sequencing assay ERX1861044 Stim-single9_S9_L004_R2_001.fastq.gz Stim-single9_S9_L004_R2_001.fastq.gz ERR1797428 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797428/ERR1797428_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 9 +CL-Unstim 1 ERS1505468 SAMEA50515168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 1 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 1 SAMEA50515168 sequencing assay ERX1861045 Unstim-single1_S21_L001_R1_001.fastq.gz Unstim-single1_S21_L001_R1_001.fastq.gz ERR1797429 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797429/ERR1797429_1.fastq.gz 254 128 immortal cell line cell none CL-Unstim 1 +CL-Unstim 1 ERS1505468 SAMEA50515168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 1 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 1 SAMEA50515168 sequencing assay ERX1861045 Unstim-single1_S21_L001_R2_001.fastq.gz Unstim-single1_S21_L001_R2_001.fastq.gz ERR1797429 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797429/ERR1797429_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 1 +CL-Unstim 1 ERS1505468 SAMEA50515168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 1 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 1 SAMEA50515168 sequencing assay ERX1861045 Unstim-single1_S21_L002_R1_001.fastq.gz Unstim-single1_S21_L002_R1_001.fastq.gz ERR1797430 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797430/ERR1797430_1.fastq.gz 234 118 immortal cell line cell none CL-Unstim 1 +CL-Unstim 1 ERS1505468 SAMEA50515168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 1 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 1 SAMEA50515168 sequencing assay ERX1861045 Unstim-single1_S21_L002_R2_001.fastq.gz Unstim-single1_S21_L002_R2_001.fastq.gz ERR1797430 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797430/ERR1797430_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 1 +CL-Unstim 1 ERS1505468 SAMEA50515168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 1 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 1 SAMEA50515168 sequencing assay ERX1861045 Unstim-single1_S21_L003_R1_001.fastq.gz Unstim-single1_S21_L003_R1_001.fastq.gz ERR1797431 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797431/ERR1797431_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 1 +CL-Unstim 1 ERS1505468 SAMEA50515168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 1 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 1 SAMEA50515168 sequencing assay ERX1861045 Unstim-single1_S21_L003_R2_001.fastq.gz Unstim-single1_S21_L003_R2_001.fastq.gz ERR1797431 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797431/ERR1797431_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 1 +CL-Unstim 1 ERS1505468 SAMEA50515168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 1 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 1 SAMEA50515168 sequencing assay ERX1861045 Unstim-single1_S21_L004_R1_001.fastq.gz Unstim-single1_S21_L004_R1_001.fastq.gz ERR1797432 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797432/ERR1797432_1.fastq.gz 298 150 immortal cell line cell none CL-Unstim 1 +CL-Unstim 1 ERS1505468 SAMEA50515168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 1 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 1 SAMEA50515168 sequencing assay ERX1861045 Unstim-single1_S21_L004_R2_001.fastq.gz Unstim-single1_S21_L004_R2_001.fastq.gz ERR1797432 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797432/ERR1797432_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 1 +CL-Unstim 10 ERS1505469 SAMEA50515918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 10 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 10 SAMEA50515918 sequencing assay ERX1861046 Unstim-single10_S30_L001_R1_001.fastq.gz Unstim-single10_S30_L001_R1_001.fastq.gz ERR1797433 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797433/ERR1797433_1.fastq.gz 270 136 immortal cell line cell none CL-Unstim 10 +CL-Unstim 10 ERS1505469 SAMEA50515918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 10 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 10 SAMEA50515918 sequencing assay ERX1861046 Unstim-single10_S30_L001_R2_001.fastq.gz Unstim-single10_S30_L001_R2_001.fastq.gz ERR1797433 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797433/ERR1797433_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 10 +CL-Unstim 10 ERS1505469 SAMEA50515918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 10 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 10 SAMEA50515918 sequencing assay ERX1861046 Unstim-single10_S30_L002_R1_001.fastq.gz Unstim-single10_S30_L002_R1_001.fastq.gz ERR1797434 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797434/ERR1797434_1.fastq.gz 258 130 immortal cell line cell none CL-Unstim 10 +CL-Unstim 10 ERS1505469 SAMEA50515918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 10 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 10 SAMEA50515918 sequencing assay ERX1861046 Unstim-single10_S30_L002_R2_001.fastq.gz Unstim-single10_S30_L002_R2_001.fastq.gz ERR1797434 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797434/ERR1797434_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 10 +CL-Unstim 10 ERS1505469 SAMEA50515918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 10 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 10 SAMEA50515918 sequencing assay ERX1861046 Unstim-single10_S30_L003_R1_001.fastq.gz Unstim-single10_S30_L003_R1_001.fastq.gz ERR1797435 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797435/ERR1797435_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 10 +CL-Unstim 10 ERS1505469 SAMEA50515918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 10 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 10 SAMEA50515918 sequencing assay ERX1861046 Unstim-single10_S30_L003_R2_001.fastq.gz Unstim-single10_S30_L003_R2_001.fastq.gz ERR1797435 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797435/ERR1797435_2.fastq.gz 300 151 immortal cell line cell none CL-Unstim 10 +CL-Unstim 10 ERS1505469 SAMEA50515918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 10 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 10 SAMEA50515918 sequencing assay ERX1861046 Unstim-single10_S30_L004_R1_001.fastq.gz Unstim-single10_S30_L004_R1_001.fastq.gz ERR1797436 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797436/ERR1797436_1.fastq.gz 298 150 immortal cell line cell none CL-Unstim 10 +CL-Unstim 10 ERS1505469 SAMEA50515918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 10 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 10 SAMEA50515918 sequencing assay ERX1861046 Unstim-single10_S30_L004_R2_001.fastq.gz Unstim-single10_S30_L004_R2_001.fastq.gz ERR1797436 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797436/ERR1797436_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 10 +CL-Unstim 11 ERS1505470 SAMEA50516668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 11 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 11 SAMEA50516668 sequencing assay ERX1861047 Unstim-single11_S31_L001_R1_001.fastq.gz Unstim-single11_S31_L001_R1_001.fastq.gz ERR1797437 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797437/ERR1797437_1.fastq.gz 252 127 immortal cell line cell none CL-Unstim 11 +CL-Unstim 11 ERS1505470 SAMEA50516668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 11 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 11 SAMEA50516668 sequencing assay ERX1861047 Unstim-single11_S31_L001_R2_001.fastq.gz Unstim-single11_S31_L001_R2_001.fastq.gz ERR1797437 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797437/ERR1797437_2.fastq.gz 70 36 immortal cell line cell none CL-Unstim 11 +CL-Unstim 11 ERS1505470 SAMEA50516668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 11 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 11 SAMEA50516668 sequencing assay ERX1861047 Unstim-single11_S31_L002_R1_001.fastq.gz Unstim-single11_S31_L002_R1_001.fastq.gz ERR1797438 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797438/ERR1797438_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 11 +CL-Unstim 11 ERS1505470 SAMEA50516668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 11 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 11 SAMEA50516668 sequencing assay ERX1861047 Unstim-single11_S31_L002_R2_001.fastq.gz Unstim-single11_S31_L002_R2_001.fastq.gz ERR1797438 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797438/ERR1797438_2.fastq.gz 70 36 immortal cell line cell none CL-Unstim 11 +CL-Unstim 11 ERS1505470 SAMEA50516668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 11 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 11 SAMEA50516668 sequencing assay ERX1861047 Unstim-single11_S31_L003_R1_001.fastq.gz Unstim-single11_S31_L003_R1_001.fastq.gz ERR1797439 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797439/ERR1797439_1.fastq.gz 300 151 immortal cell line cell none CL-Unstim 11 +CL-Unstim 11 ERS1505470 SAMEA50516668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 11 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 11 SAMEA50516668 sequencing assay ERX1861047 Unstim-single11_S31_L003_R2_001.fastq.gz Unstim-single11_S31_L003_R2_001.fastq.gz ERR1797439 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797439/ERR1797439_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 11 +CL-Unstim 11 ERS1505470 SAMEA50516668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 11 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 11 SAMEA50516668 sequencing assay ERX1861047 Unstim-single11_S31_L004_R1_001.fastq.gz Unstim-single11_S31_L004_R1_001.fastq.gz ERR1797440 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797440/ERR1797440_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 11 +CL-Unstim 11 ERS1505470 SAMEA50516668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 11 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 11 SAMEA50516668 sequencing assay ERX1861047 Unstim-single11_S31_L004_R2_001.fastq.gz Unstim-single11_S31_L004_R2_001.fastq.gz ERR1797440 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797440/ERR1797440_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 11 +CL-Unstim 12 ERS1505471 SAMEA50517418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 12 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 12 SAMEA50517418 sequencing assay ERX1861048 Unstim-single12_S32_L001_R1_001.fastq.gz Unstim-single12_S32_L001_R1_001.fastq.gz ERR1797441 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797441/ERR1797441_1.fastq.gz 250 126 immortal cell line cell none CL-Unstim 12 +CL-Unstim 12 ERS1505471 SAMEA50517418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 12 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 12 SAMEA50517418 sequencing assay ERX1861048 Unstim-single12_S32_L001_R2_001.fastq.gz Unstim-single12_S32_L001_R2_001.fastq.gz ERR1797441 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797441/ERR1797441_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 12 +CL-Unstim 12 ERS1505471 SAMEA50517418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 12 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 12 SAMEA50517418 sequencing assay ERX1861048 Unstim-single12_S32_L002_R1_001.fastq.gz Unstim-single12_S32_L002_R1_001.fastq.gz ERR1797442 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797442/ERR1797442_1.fastq.gz 228 115 immortal cell line cell none CL-Unstim 12 +CL-Unstim 12 ERS1505471 SAMEA50517418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 12 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 12 SAMEA50517418 sequencing assay ERX1861048 Unstim-single12_S32_L002_R2_001.fastq.gz Unstim-single12_S32_L002_R2_001.fastq.gz ERR1797442 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797442/ERR1797442_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 12 +CL-Unstim 12 ERS1505471 SAMEA50517418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 12 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 12 SAMEA50517418 sequencing assay ERX1861048 Unstim-single12_S32_L003_R1_001.fastq.gz Unstim-single12_S32_L003_R1_001.fastq.gz ERR1797443 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797443/ERR1797443_1.fastq.gz 300 151 immortal cell line cell none CL-Unstim 12 +CL-Unstim 12 ERS1505471 SAMEA50517418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 12 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 12 SAMEA50517418 sequencing assay ERX1861048 Unstim-single12_S32_L003_R2_001.fastq.gz Unstim-single12_S32_L003_R2_001.fastq.gz ERR1797443 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797443/ERR1797443_2.fastq.gz 300 151 immortal cell line cell none CL-Unstim 12 +CL-Unstim 12 ERS1505471 SAMEA50517418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 12 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 12 SAMEA50517418 sequencing assay ERX1861048 Unstim-single12_S32_L004_R1_001.fastq.gz Unstim-single12_S32_L004_R1_001.fastq.gz ERR1797444 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797444/ERR1797444_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 12 +CL-Unstim 12 ERS1505471 SAMEA50517418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 12 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 12 SAMEA50517418 sequencing assay ERX1861048 Unstim-single12_S32_L004_R2_001.fastq.gz Unstim-single12_S32_L004_R2_001.fastq.gz ERR1797444 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797444/ERR1797444_2.fastq.gz 300 151 immortal cell line cell none CL-Unstim 12 +CL-Unstim 13 ERS1505472 SAMEA50518168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 13 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 13 SAMEA50518168 sequencing assay ERX1861049 Unstim-single13_S33_L001_R1_001.fastq.gz Unstim-single13_S33_L001_R1_001.fastq.gz ERR1797445 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797445/ERR1797445_1.fastq.gz 282 142 immortal cell line cell none CL-Unstim 13 +CL-Unstim 13 ERS1505472 SAMEA50518168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 13 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 13 SAMEA50518168 sequencing assay ERX1861049 Unstim-single13_S33_L001_R2_001.fastq.gz Unstim-single13_S33_L001_R2_001.fastq.gz ERR1797445 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797445/ERR1797445_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 13 +CL-Unstim 13 ERS1505472 SAMEA50518168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 13 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 13 SAMEA50518168 sequencing assay ERX1861049 Unstim-single13_S33_L002_R1_001.fastq.gz Unstim-single13_S33_L002_R1_001.fastq.gz ERR1797446 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797446/ERR1797446_1.fastq.gz 234 118 immortal cell line cell none CL-Unstim 13 +CL-Unstim 13 ERS1505472 SAMEA50518168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 13 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 13 SAMEA50518168 sequencing assay ERX1861049 Unstim-single13_S33_L002_R2_001.fastq.gz Unstim-single13_S33_L002_R2_001.fastq.gz ERR1797446 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797446/ERR1797446_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 13 +CL-Unstim 13 ERS1505472 SAMEA50518168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 13 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 13 SAMEA50518168 sequencing assay ERX1861049 Unstim-single13_S33_L003_R1_001.fastq.gz Unstim-single13_S33_L003_R1_001.fastq.gz ERR1797447 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797447/ERR1797447_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 13 +CL-Unstim 13 ERS1505472 SAMEA50518168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 13 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 13 SAMEA50518168 sequencing assay ERX1861049 Unstim-single13_S33_L003_R2_001.fastq.gz Unstim-single13_S33_L003_R2_001.fastq.gz ERR1797447 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797447/ERR1797447_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 13 +CL-Unstim 13 ERS1505472 SAMEA50518168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 13 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 13 SAMEA50518168 sequencing assay ERX1861049 Unstim-single13_S33_L004_R1_001.fastq.gz Unstim-single13_S33_L004_R1_001.fastq.gz ERR1797448 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797448/ERR1797448_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 13 +CL-Unstim 13 ERS1505472 SAMEA50518168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 13 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 13 SAMEA50518168 sequencing assay ERX1861049 Unstim-single13_S33_L004_R2_001.fastq.gz Unstim-single13_S33_L004_R2_001.fastq.gz ERR1797448 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797448/ERR1797448_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 13 +CL-Unstim 14 ERS1505473 SAMEA50518918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 14 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 14 SAMEA50518918 sequencing assay ERX1861050 Unstim-single14_S34_L001_R1_001.fastq.gz Unstim-single14_S34_L001_R1_001.fastq.gz ERR1797449 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797449/ERR1797449_1.fastq.gz 250 126 immortal cell line cell none CL-Unstim 14 +CL-Unstim 14 ERS1505473 SAMEA50518918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 14 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 14 SAMEA50518918 sequencing assay ERX1861050 Unstim-single14_S34_L001_R2_001.fastq.gz Unstim-single14_S34_L001_R2_001.fastq.gz ERR1797449 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797449/ERR1797449_2.fastq.gz 70 36 immortal cell line cell none CL-Unstim 14 +CL-Unstim 14 ERS1505473 SAMEA50518918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 14 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 14 SAMEA50518918 sequencing assay ERX1861050 Unstim-single14_S34_L002_R1_001.fastq.gz Unstim-single14_S34_L002_R1_001.fastq.gz ERR1797450 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797450/ERR1797450_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 14 +CL-Unstim 14 ERS1505473 SAMEA50518918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 14 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 14 SAMEA50518918 sequencing assay ERX1861050 Unstim-single14_S34_L002_R2_001.fastq.gz Unstim-single14_S34_L002_R2_001.fastq.gz ERR1797450 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797450/ERR1797450_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 14 +CL-Unstim 14 ERS1505473 SAMEA50518918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 14 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 14 SAMEA50518918 sequencing assay ERX1861050 Unstim-single14_S34_L003_R1_001.fastq.gz Unstim-single14_S34_L003_R1_001.fastq.gz ERR1797451 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797451/ERR1797451_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 14 +CL-Unstim 14 ERS1505473 SAMEA50518918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 14 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 14 SAMEA50518918 sequencing assay ERX1861050 Unstim-single14_S34_L003_R2_001.fastq.gz Unstim-single14_S34_L003_R2_001.fastq.gz ERR1797451 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797451/ERR1797451_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 14 +CL-Unstim 14 ERS1505473 SAMEA50518918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 14 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 14 SAMEA50518918 sequencing assay ERX1861050 Unstim-single14_S34_L004_R1_001.fastq.gz Unstim-single14_S34_L004_R1_001.fastq.gz ERR1797452 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797452/ERR1797452_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 14 +CL-Unstim 14 ERS1505473 SAMEA50518918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 14 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 14 SAMEA50518918 sequencing assay ERX1861050 Unstim-single14_S34_L004_R2_001.fastq.gz Unstim-single14_S34_L004_R2_001.fastq.gz ERR1797452 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797452/ERR1797452_2.fastq.gz 300 151 immortal cell line cell none CL-Unstim 14 +CL-Unstim 15 ERS1505474 SAMEA50519668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 15 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 15 SAMEA50519668 sequencing assay ERX1861051 Unstim-single15_S35_L001_R1_001.fastq.gz Unstim-single15_S35_L001_R1_001.fastq.gz ERR1797453 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797453/ERR1797453_1.fastq.gz 250 126 immortal cell line cell none CL-Unstim 15 +CL-Unstim 15 ERS1505474 SAMEA50519668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 15 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 15 SAMEA50519668 sequencing assay ERX1861051 Unstim-single15_S35_L001_R2_001.fastq.gz Unstim-single15_S35_L001_R2_001.fastq.gz ERR1797453 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797453/ERR1797453_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 15 +CL-Unstim 15 ERS1505474 SAMEA50519668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 15 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 15 SAMEA50519668 sequencing assay ERX1861051 Unstim-single15_S35_L002_R1_001.fastq.gz Unstim-single15_S35_L002_R1_001.fastq.gz ERR1797454 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797454/ERR1797454_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 15 +CL-Unstim 15 ERS1505474 SAMEA50519668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 15 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 15 SAMEA50519668 sequencing assay ERX1861051 Unstim-single15_S35_L002_R2_001.fastq.gz Unstim-single15_S35_L002_R2_001.fastq.gz ERR1797454 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797454/ERR1797454_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 15 +CL-Unstim 15 ERS1505474 SAMEA50519668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 15 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 15 SAMEA50519668 sequencing assay ERX1861051 Unstim-single15_S35_L003_R1_001.fastq.gz Unstim-single15_S35_L003_R1_001.fastq.gz ERR1797455 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797455/ERR1797455_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 15 +CL-Unstim 15 ERS1505474 SAMEA50519668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 15 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 15 SAMEA50519668 sequencing assay ERX1861051 Unstim-single15_S35_L003_R2_001.fastq.gz Unstim-single15_S35_L003_R2_001.fastq.gz ERR1797455 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797455/ERR1797455_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 15 +CL-Unstim 15 ERS1505474 SAMEA50519668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 15 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 15 SAMEA50519668 sequencing assay ERX1861051 Unstim-single15_S35_L004_R1_001.fastq.gz Unstim-single15_S35_L004_R1_001.fastq.gz ERR1797456 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797456/ERR1797456_1.fastq.gz 300 151 immortal cell line cell none CL-Unstim 15 +CL-Unstim 15 ERS1505474 SAMEA50519668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 15 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 15 SAMEA50519668 sequencing assay ERX1861051 Unstim-single15_S35_L004_R2_001.fastq.gz Unstim-single15_S35_L004_R2_001.fastq.gz ERR1797456 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797456/ERR1797456_2.fastq.gz 300 151 immortal cell line cell none CL-Unstim 15 +CL-Unstim 16 ERS1505475 SAMEA50520418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 16 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 16 SAMEA50520418 sequencing assay ERX1861052 Unstim-single16_S36_L001_R1_001.fastq.gz Unstim-single16_S36_L001_R1_001.fastq.gz ERR1797457 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797457/ERR1797457_1.fastq.gz 300 151 immortal cell line cell none CL-Unstim 16 +CL-Unstim 16 ERS1505475 SAMEA50520418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 16 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 16 SAMEA50520418 sequencing assay ERX1861052 Unstim-single16_S36_L001_R2_001.fastq.gz Unstim-single16_S36_L001_R2_001.fastq.gz ERR1797457 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797457/ERR1797457_2.fastq.gz 70 36 immortal cell line cell none CL-Unstim 16 +CL-Unstim 16 ERS1505475 SAMEA50520418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 16 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 16 SAMEA50520418 sequencing assay ERX1861052 Unstim-single16_S36_L002_R1_001.fastq.gz Unstim-single16_S36_L002_R1_001.fastq.gz ERR1797458 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797458/ERR1797458_1.fastq.gz 236 119 immortal cell line cell none CL-Unstim 16 +CL-Unstim 16 ERS1505475 SAMEA50520418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 16 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 16 SAMEA50520418 sequencing assay ERX1861052 Unstim-single16_S36_L002_R2_001.fastq.gz Unstim-single16_S36_L002_R2_001.fastq.gz ERR1797458 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797458/ERR1797458_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 16 +CL-Unstim 16 ERS1505475 SAMEA50520418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 16 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 16 SAMEA50520418 sequencing assay ERX1861052 Unstim-single16_S36_L003_R1_001.fastq.gz Unstim-single16_S36_L003_R1_001.fastq.gz ERR1797459 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797459/ERR1797459_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 16 +CL-Unstim 16 ERS1505475 SAMEA50520418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 16 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 16 SAMEA50520418 sequencing assay ERX1861052 Unstim-single16_S36_L003_R2_001.fastq.gz Unstim-single16_S36_L003_R2_001.fastq.gz ERR1797459 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797459/ERR1797459_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 16 +CL-Unstim 16 ERS1505475 SAMEA50520418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 16 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 16 SAMEA50520418 sequencing assay ERX1861052 Unstim-single16_S36_L004_R1_001.fastq.gz Unstim-single16_S36_L004_R1_001.fastq.gz ERR1797460 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797460/ERR1797460_1.fastq.gz 300 151 immortal cell line cell none CL-Unstim 16 +CL-Unstim 16 ERS1505475 SAMEA50520418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 16 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 16 SAMEA50520418 sequencing assay ERX1861052 Unstim-single16_S36_L004_R2_001.fastq.gz Unstim-single16_S36_L004_R2_001.fastq.gz ERR1797460 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797460/ERR1797460_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 16 +CL-Unstim 17 ERS1505476 SAMEA50521168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 17 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 17 SAMEA50521168 sequencing assay ERX1861053 Unstim-single17_S37_L001_R1_001.fastq.gz Unstim-single17_S37_L001_R1_001.fastq.gz ERR1797461 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797461/ERR1797461_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 17 +CL-Unstim 17 ERS1505476 SAMEA50521168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 17 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 17 SAMEA50521168 sequencing assay ERX1861053 Unstim-single17_S37_L001_R2_001.fastq.gz Unstim-single17_S37_L001_R2_001.fastq.gz ERR1797461 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797461/ERR1797461_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 17 +CL-Unstim 17 ERS1505476 SAMEA50521168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 17 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 17 SAMEA50521168 sequencing assay ERX1861053 Unstim-single17_S37_L002_R1_001.fastq.gz Unstim-single17_S37_L002_R1_001.fastq.gz ERR1797462 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797462/ERR1797462_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 17 +CL-Unstim 17 ERS1505476 SAMEA50521168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 17 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 17 SAMEA50521168 sequencing assay ERX1861053 Unstim-single17_S37_L002_R2_001.fastq.gz Unstim-single17_S37_L002_R2_001.fastq.gz ERR1797462 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797462/ERR1797462_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 17 +CL-Unstim 17 ERS1505476 SAMEA50521168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 17 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 17 SAMEA50521168 sequencing assay ERX1861053 Unstim-single17_S37_L003_R1_001.fastq.gz Unstim-single17_S37_L003_R1_001.fastq.gz ERR1797463 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797463/ERR1797463_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 17 +CL-Unstim 17 ERS1505476 SAMEA50521168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 17 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 17 SAMEA50521168 sequencing assay ERX1861053 Unstim-single17_S37_L003_R2_001.fastq.gz Unstim-single17_S37_L003_R2_001.fastq.gz ERR1797463 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797463/ERR1797463_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 17 +CL-Unstim 17 ERS1505476 SAMEA50521168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 17 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 17 SAMEA50521168 sequencing assay ERX1861053 Unstim-single17_S37_L004_R1_001.fastq.gz Unstim-single17_S37_L004_R1_001.fastq.gz ERR1797464 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797464/ERR1797464_1.fastq.gz 260 131 immortal cell line cell none CL-Unstim 17 +CL-Unstim 17 ERS1505476 SAMEA50521168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 17 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 17 SAMEA50521168 sequencing assay ERX1861053 Unstim-single17_S37_L004_R2_001.fastq.gz Unstim-single17_S37_L004_R2_001.fastq.gz ERR1797464 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797464/ERR1797464_2.fastq.gz 260 131 immortal cell line cell none CL-Unstim 17 +CL-Unstim 18 ERS1505477 SAMEA50521918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 18 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 18 SAMEA50521918 sequencing assay ERX1861054 Unstim-single18_S38_L001_R1_001.fastq.gz Unstim-single18_S38_L001_R1_001.fastq.gz ERR1797465 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797465/ERR1797465_1.fastq.gz 276 139 immortal cell line cell none CL-Unstim 18 +CL-Unstim 18 ERS1505477 SAMEA50521918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 18 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 18 SAMEA50521918 sequencing assay ERX1861054 Unstim-single18_S38_L001_R2_001.fastq.gz Unstim-single18_S38_L001_R2_001.fastq.gz ERR1797465 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797465/ERR1797465_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 18 +CL-Unstim 18 ERS1505477 SAMEA50521918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 18 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 18 SAMEA50521918 sequencing assay ERX1861054 Unstim-single18_S38_L002_R1_001.fastq.gz Unstim-single18_S38_L002_R1_001.fastq.gz ERR1797466 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797466/ERR1797466_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 18 +CL-Unstim 18 ERS1505477 SAMEA50521918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 18 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 18 SAMEA50521918 sequencing assay ERX1861054 Unstim-single18_S38_L002_R2_001.fastq.gz Unstim-single18_S38_L002_R2_001.fastq.gz ERR1797466 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797466/ERR1797466_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 18 +CL-Unstim 18 ERS1505477 SAMEA50521918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 18 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 18 SAMEA50521918 sequencing assay ERX1861054 Unstim-single18_S38_L003_R1_001.fastq.gz Unstim-single18_S38_L003_R1_001.fastq.gz ERR1797467 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797467/ERR1797467_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 18 +CL-Unstim 18 ERS1505477 SAMEA50521918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 18 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 18 SAMEA50521918 sequencing assay ERX1861054 Unstim-single18_S38_L003_R2_001.fastq.gz Unstim-single18_S38_L003_R2_001.fastq.gz ERR1797467 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797467/ERR1797467_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 18 +CL-Unstim 18 ERS1505477 SAMEA50521918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 18 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 18 SAMEA50521918 sequencing assay ERX1861054 Unstim-single18_S38_L004_R1_001.fastq.gz Unstim-single18_S38_L004_R1_001.fastq.gz ERR1797468 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797468/ERR1797468_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 18 +CL-Unstim 18 ERS1505477 SAMEA50521918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 18 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 18 SAMEA50521918 sequencing assay ERX1861054 Unstim-single18_S38_L004_R2_001.fastq.gz Unstim-single18_S38_L004_R2_001.fastq.gz ERR1797468 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797468/ERR1797468_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 18 +CL-Unstim 2 ERS1505478 SAMEA50522668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 2 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 2 SAMEA50522668 sequencing assay ERX1861055 Unstim-single2_S22_L001_R1_001.fastq.gz Unstim-single2_S22_L001_R1_001.fastq.gz ERR1797469 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797469/ERR1797469_1.fastq.gz 266 134 immortal cell line cell none CL-Unstim 2 +CL-Unstim 2 ERS1505478 SAMEA50522668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 2 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 2 SAMEA50522668 sequencing assay ERX1861055 Unstim-single2_S22_L001_R2_001.fastq.gz Unstim-single2_S22_L001_R2_001.fastq.gz ERR1797469 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797469/ERR1797469_2.fastq.gz 70 36 immortal cell line cell none CL-Unstim 2 +CL-Unstim 2 ERS1505478 SAMEA50522668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 2 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 2 SAMEA50522668 sequencing assay ERX1861055 Unstim-single2_S22_L002_R1_001.fastq.gz Unstim-single2_S22_L002_R1_001.fastq.gz ERR1797470 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797470/ERR1797470_1.fastq.gz 182 92 immortal cell line cell none CL-Unstim 2 +CL-Unstim 2 ERS1505478 SAMEA50522668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 2 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 2 SAMEA50522668 sequencing assay ERX1861055 Unstim-single2_S22_L002_R2_001.fastq.gz Unstim-single2_S22_L002_R2_001.fastq.gz ERR1797470 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797470/ERR1797470_2.fastq.gz 70 36 immortal cell line cell none CL-Unstim 2 +CL-Unstim 2 ERS1505478 SAMEA50522668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 2 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 2 SAMEA50522668 sequencing assay ERX1861055 Unstim-single2_S22_L003_R1_001.fastq.gz Unstim-single2_S22_L003_R1_001.fastq.gz ERR1797471 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797471/ERR1797471_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 2 +CL-Unstim 2 ERS1505478 SAMEA50522668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 2 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 2 SAMEA50522668 sequencing assay ERX1861055 Unstim-single2_S22_L003_R2_001.fastq.gz Unstim-single2_S22_L003_R2_001.fastq.gz ERR1797471 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797471/ERR1797471_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 2 +CL-Unstim 2 ERS1505478 SAMEA50522668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 2 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 2 SAMEA50522668 sequencing assay ERX1861055 Unstim-single2_S22_L004_R1_001.fastq.gz Unstim-single2_S22_L004_R1_001.fastq.gz ERR1797472 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797472/ERR1797472_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 2 +CL-Unstim 2 ERS1505478 SAMEA50522668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 2 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 2 SAMEA50522668 sequencing assay ERX1861055 Unstim-single2_S22_L004_R2_001.fastq.gz Unstim-single2_S22_L004_R2_001.fastq.gz ERR1797472 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797472/ERR1797472_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 2 +CL-Unstim 3 ERS1505479 SAMEA50523418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 3 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 3 SAMEA50523418 sequencing assay ERX1861056 Unstim-single3_S23_L001_R1_001.fastq.gz Unstim-single3_S23_L001_R1_001.fastq.gz ERR1797473 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797473/ERR1797473_1.fastq.gz 250 126 immortal cell line cell none CL-Unstim 3 +CL-Unstim 3 ERS1505479 SAMEA50523418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 3 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 3 SAMEA50523418 sequencing assay ERX1861056 Unstim-single3_S23_L001_R2_001.fastq.gz Unstim-single3_S23_L001_R2_001.fastq.gz ERR1797473 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797473/ERR1797473_2.fastq.gz 70 36 immortal cell line cell none CL-Unstim 3 +CL-Unstim 3 ERS1505479 SAMEA50523418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 3 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 3 SAMEA50523418 sequencing assay ERX1861056 Unstim-single3_S23_L002_R1_001.fastq.gz Unstim-single3_S23_L002_R1_001.fastq.gz ERR1797474 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797474/ERR1797474_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 3 +CL-Unstim 3 ERS1505479 SAMEA50523418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 3 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 3 SAMEA50523418 sequencing assay ERX1861056 Unstim-single3_S23_L002_R2_001.fastq.gz Unstim-single3_S23_L002_R2_001.fastq.gz ERR1797474 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797474/ERR1797474_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 3 +CL-Unstim 3 ERS1505479 SAMEA50523418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 3 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 3 SAMEA50523418 sequencing assay ERX1861056 Unstim-single3_S23_L003_R1_001.fastq.gz Unstim-single3_S23_L003_R1_001.fastq.gz ERR1797475 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797475/ERR1797475_1.fastq.gz 198 100 immortal cell line cell none CL-Unstim 3 +CL-Unstim 3 ERS1505479 SAMEA50523418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 3 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 3 SAMEA50523418 sequencing assay ERX1861056 Unstim-single3_S23_L003_R2_001.fastq.gz Unstim-single3_S23_L003_R2_001.fastq.gz ERR1797475 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797475/ERR1797475_2.fastq.gz 198 100 immortal cell line cell none CL-Unstim 3 +CL-Unstim 3 ERS1505479 SAMEA50523418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 3 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 3 SAMEA50523418 sequencing assay ERX1861056 Unstim-single3_S23_L004_R1_001.fastq.gz Unstim-single3_S23_L004_R1_001.fastq.gz ERR1797476 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797476/ERR1797476_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 3 +CL-Unstim 3 ERS1505479 SAMEA50523418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 3 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 3 SAMEA50523418 sequencing assay ERX1861056 Unstim-single3_S23_L004_R2_001.fastq.gz Unstim-single3_S23_L004_R2_001.fastq.gz ERR1797476 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797476/ERR1797476_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 3 +CL-Unstim 4 ERS1505480 SAMEA50524168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 4 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 4 SAMEA50524168 sequencing assay ERX1861057 Unstim-single4_S24_L001_R1_001.fastq.gz Unstim-single4_S24_L001_R1_001.fastq.gz ERR1797477 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797477/ERR1797477_1.fastq.gz 288 145 immortal cell line cell none CL-Unstim 4 +CL-Unstim 4 ERS1505480 SAMEA50524168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 4 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 4 SAMEA50524168 sequencing assay ERX1861057 Unstim-single4_S24_L001_R2_001.fastq.gz Unstim-single4_S24_L001_R2_001.fastq.gz ERR1797477 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797477/ERR1797477_2.fastq.gz 70 36 immortal cell line cell none CL-Unstim 4 +CL-Unstim 4 ERS1505480 SAMEA50524168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 4 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 4 SAMEA50524168 sequencing assay ERX1861057 Unstim-single4_S24_L002_R1_001.fastq.gz Unstim-single4_S24_L002_R1_001.fastq.gz ERR1797478 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797478/ERR1797478_1.fastq.gz 260 131 immortal cell line cell none CL-Unstim 4 +CL-Unstim 4 ERS1505480 SAMEA50524168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 4 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 4 SAMEA50524168 sequencing assay ERX1861057 Unstim-single4_S24_L002_R2_001.fastq.gz Unstim-single4_S24_L002_R2_001.fastq.gz ERR1797478 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797478/ERR1797478_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 4 +CL-Unstim 4 ERS1505480 SAMEA50524168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 4 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 4 SAMEA50524168 sequencing assay ERX1861057 Unstim-single4_S24_L003_R1_001.fastq.gz Unstim-single4_S24_L003_R1_001.fastq.gz ERR1797479 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797479/ERR1797479_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 4 +CL-Unstim 4 ERS1505480 SAMEA50524168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 4 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 4 SAMEA50524168 sequencing assay ERX1861057 Unstim-single4_S24_L003_R2_001.fastq.gz Unstim-single4_S24_L003_R2_001.fastq.gz ERR1797479 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797479/ERR1797479_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 4 +CL-Unstim 4 ERS1505480 SAMEA50524168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 4 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 4 SAMEA50524168 sequencing assay ERX1861057 Unstim-single4_S24_L004_R1_001.fastq.gz Unstim-single4_S24_L004_R1_001.fastq.gz ERR1797480 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797480/ERR1797480_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 4 +CL-Unstim 4 ERS1505480 SAMEA50524168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 4 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 4 SAMEA50524168 sequencing assay ERX1861057 Unstim-single4_S24_L004_R2_001.fastq.gz Unstim-single4_S24_L004_R2_001.fastq.gz ERR1797480 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797480/ERR1797480_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 4 +CL-Unstim 5 ERS1505481 SAMEA50524918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 5 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 5 SAMEA50524918 sequencing assay ERX1861058 Unstim-single5_S25_L001_R1_001.fastq.gz Unstim-single5_S25_L001_R1_001.fastq.gz ERR1797481 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797481/ERR1797481_1.fastq.gz 280 141 immortal cell line cell none CL-Unstim 5 +CL-Unstim 5 ERS1505481 SAMEA50524918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 5 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 5 SAMEA50524918 sequencing assay ERX1861058 Unstim-single5_S25_L001_R2_001.fastq.gz Unstim-single5_S25_L001_R2_001.fastq.gz ERR1797481 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797481/ERR1797481_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 5 +CL-Unstim 5 ERS1505481 SAMEA50524918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 5 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 5 SAMEA50524918 sequencing assay ERX1861058 Unstim-single5_S25_L002_R1_001.fastq.gz Unstim-single5_S25_L002_R1_001.fastq.gz ERR1797482 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797482/ERR1797482_1.fastq.gz 232 117 immortal cell line cell none CL-Unstim 5 +CL-Unstim 5 ERS1505481 SAMEA50524918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 5 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 5 SAMEA50524918 sequencing assay ERX1861058 Unstim-single5_S25_L002_R2_001.fastq.gz Unstim-single5_S25_L002_R2_001.fastq.gz ERR1797482 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797482/ERR1797482_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 5 +CL-Unstim 5 ERS1505481 SAMEA50524918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 5 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 5 SAMEA50524918 sequencing assay ERX1861058 Unstim-single5_S25_L003_R1_001.fastq.gz Unstim-single5_S25_L003_R1_001.fastq.gz ERR1797483 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797483/ERR1797483_1.fastq.gz 296 149 immortal cell line cell none CL-Unstim 5 +CL-Unstim 5 ERS1505481 SAMEA50524918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 5 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 5 SAMEA50524918 sequencing assay ERX1861058 Unstim-single5_S25_L003_R2_001.fastq.gz Unstim-single5_S25_L003_R2_001.fastq.gz ERR1797483 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797483/ERR1797483_2.fastq.gz 300 151 immortal cell line cell none CL-Unstim 5 +CL-Unstim 5 ERS1505481 SAMEA50524918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 5 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 5 SAMEA50524918 sequencing assay ERX1861058 Unstim-single5_S25_L004_R1_001.fastq.gz Unstim-single5_S25_L004_R1_001.fastq.gz ERR1797484 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797484/ERR1797484_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 5 +CL-Unstim 5 ERS1505481 SAMEA50524918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 5 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 5 SAMEA50524918 sequencing assay ERX1861058 Unstim-single5_S25_L004_R2_001.fastq.gz Unstim-single5_S25_L004_R2_001.fastq.gz ERR1797484 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797484/ERR1797484_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 5 +CL-Unstim 6 ERS1505482 SAMEA50525668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 6 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 6 SAMEA50525668 sequencing assay ERX1861059 Unstim-single6_S26_L001_R1_001.fastq.gz Unstim-single6_S26_L001_R1_001.fastq.gz ERR1797485 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797485/ERR1797485_1.fastq.gz 116 59 immortal cell line cell none CL-Unstim 6 +CL-Unstim 6 ERS1505482 SAMEA50525668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 6 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 6 SAMEA50525668 sequencing assay ERX1861059 Unstim-single6_S26_L001_R2_001.fastq.gz Unstim-single6_S26_L001_R2_001.fastq.gz ERR1797485 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797485/ERR1797485_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 6 +CL-Unstim 6 ERS1505482 SAMEA50525668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 6 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 6 SAMEA50525668 sequencing assay ERX1861059 Unstim-single6_S26_L002_R1_001.fastq.gz Unstim-single6_S26_L002_R1_001.fastq.gz ERR1797486 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797486/ERR1797486_1.fastq.gz 272 137 immortal cell line cell none CL-Unstim 6 +CL-Unstim 6 ERS1505482 SAMEA50525668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 6 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 6 SAMEA50525668 sequencing assay ERX1861059 Unstim-single6_S26_L002_R2_001.fastq.gz Unstim-single6_S26_L002_R2_001.fastq.gz ERR1797486 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797486/ERR1797486_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 6 +CL-Unstim 6 ERS1505482 SAMEA50525668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 6 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 6 SAMEA50525668 sequencing assay ERX1861059 Unstim-single6_S26_L003_R1_001.fastq.gz Unstim-single6_S26_L003_R1_001.fastq.gz ERR1797487 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797487/ERR1797487_1.fastq.gz 284 143 immortal cell line cell none CL-Unstim 6 +CL-Unstim 6 ERS1505482 SAMEA50525668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 6 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 6 SAMEA50525668 sequencing assay ERX1861059 Unstim-single6_S26_L003_R2_001.fastq.gz Unstim-single6_S26_L003_R2_001.fastq.gz ERR1797487 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797487/ERR1797487_2.fastq.gz 284 143 immortal cell line cell none CL-Unstim 6 +CL-Unstim 6 ERS1505482 SAMEA50525668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 6 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 6 SAMEA50525668 sequencing assay ERX1861059 Unstim-single6_S26_L004_R1_001.fastq.gz Unstim-single6_S26_L004_R1_001.fastq.gz ERR1797488 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797488/ERR1797488_1.fastq.gz 210 106 immortal cell line cell none CL-Unstim 6 +CL-Unstim 6 ERS1505482 SAMEA50525668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 6 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 6 SAMEA50525668 sequencing assay ERX1861059 Unstim-single6_S26_L004_R2_001.fastq.gz Unstim-single6_S26_L004_R2_001.fastq.gz ERR1797488 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797488/ERR1797488_2.fastq.gz 210 106 immortal cell line cell none CL-Unstim 6 +CL-Unstim 7 ERS1505483 SAMEA50526418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 7 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 7 SAMEA50526418 sequencing assay ERX1861060 Unstim-single7_S27_L001_R1_001.fastq.gz Unstim-single7_S27_L001_R1_001.fastq.gz ERR1797489 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797489/ERR1797489_1.fastq.gz 270 136 immortal cell line cell none CL-Unstim 7 +CL-Unstim 7 ERS1505483 SAMEA50526418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 7 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 7 SAMEA50526418 sequencing assay ERX1861060 Unstim-single7_S27_L001_R2_001.fastq.gz Unstim-single7_S27_L001_R2_001.fastq.gz ERR1797489 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797489/ERR1797489_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 7 +CL-Unstim 7 ERS1505483 SAMEA50526418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 7 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 7 SAMEA50526418 sequencing assay ERX1861060 Unstim-single7_S27_L002_R1_001.fastq.gz Unstim-single7_S27_L002_R1_001.fastq.gz ERR1797490 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797490/ERR1797490_1.fastq.gz 236 119 immortal cell line cell none CL-Unstim 7 +CL-Unstim 7 ERS1505483 SAMEA50526418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 7 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 7 SAMEA50526418 sequencing assay ERX1861060 Unstim-single7_S27_L002_R2_001.fastq.gz Unstim-single7_S27_L002_R2_001.fastq.gz ERR1797490 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797490/ERR1797490_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 7 +CL-Unstim 7 ERS1505483 SAMEA50526418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 7 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 7 SAMEA50526418 sequencing assay ERX1861060 Unstim-single7_S27_L003_R1_001.fastq.gz Unstim-single7_S27_L003_R1_001.fastq.gz ERR1797491 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797491/ERR1797491_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 7 +CL-Unstim 7 ERS1505483 SAMEA50526418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 7 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 7 SAMEA50526418 sequencing assay ERX1861060 Unstim-single7_S27_L003_R2_001.fastq.gz Unstim-single7_S27_L003_R2_001.fastq.gz ERR1797491 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797491/ERR1797491_2.fastq.gz 298 150 immortal cell line cell none CL-Unstim 7 +CL-Unstim 7 ERS1505483 SAMEA50526418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 7 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 7 SAMEA50526418 sequencing assay ERX1861060 Unstim-single7_S27_L004_R1_001.fastq.gz Unstim-single7_S27_L004_R1_001.fastq.gz ERR1797492 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797492/ERR1797492_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 7 +CL-Unstim 7 ERS1505483 SAMEA50526418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 7 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 7 SAMEA50526418 sequencing assay ERX1861060 Unstim-single7_S27_L004_R2_001.fastq.gz Unstim-single7_S27_L004_R2_001.fastq.gz ERR1797492 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797492/ERR1797492_2.fastq.gz 300 151 immortal cell line cell none CL-Unstim 7 +CL-Unstim 8 ERS1505484 SAMEA50527168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 8 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 8 SAMEA50527168 sequencing assay ERX1861061 Unstim-single8_S28_L001_R1_001.fastq.gz Unstim-single8_S28_L001_R1_001.fastq.gz ERR1797493 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797493/ERR1797493_1.fastq.gz 294 148 immortal cell line cell none CL-Unstim 8 +CL-Unstim 8 ERS1505484 SAMEA50527168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 8 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 8 SAMEA50527168 sequencing assay ERX1861061 Unstim-single8_S28_L001_R2_001.fastq.gz Unstim-single8_S28_L001_R2_001.fastq.gz ERR1797493 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797493/ERR1797493_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 8 +CL-Unstim 8 ERS1505484 SAMEA50527168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 8 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 8 SAMEA50527168 sequencing assay ERX1861061 Unstim-single8_S28_L002_R1_001.fastq.gz Unstim-single8_S28_L002_R1_001.fastq.gz ERR1797494 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797494/ERR1797494_1.fastq.gz 70 36 immortal cell line cell none CL-Unstim 8 +CL-Unstim 8 ERS1505484 SAMEA50527168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 8 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 8 SAMEA50527168 sequencing assay ERX1861061 Unstim-single8_S28_L002_R2_001.fastq.gz Unstim-single8_S28_L002_R2_001.fastq.gz ERR1797494 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797494/ERR1797494_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 8 +CL-Unstim 8 ERS1505484 SAMEA50527168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 8 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 8 SAMEA50527168 sequencing assay ERX1861061 Unstim-single8_S28_L003_R1_001.fastq.gz Unstim-single8_S28_L003_R1_001.fastq.gz ERR1797495 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797495/ERR1797495_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 8 +CL-Unstim 8 ERS1505484 SAMEA50527168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 8 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 8 SAMEA50527168 sequencing assay ERX1861061 Unstim-single8_S28_L003_R2_001.fastq.gz Unstim-single8_S28_L003_R2_001.fastq.gz ERR1797495 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797495/ERR1797495_2.fastq.gz 298 150 immortal cell line cell none CL-Unstim 8 +CL-Unstim 8 ERS1505484 SAMEA50527168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 8 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 8 SAMEA50527168 sequencing assay ERX1861061 Unstim-single8_S28_L004_R1_001.fastq.gz Unstim-single8_S28_L004_R1_001.fastq.gz ERR1797496 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797496/ERR1797496_1.fastq.gz 162 82 immortal cell line cell none CL-Unstim 8 +CL-Unstim 8 ERS1505484 SAMEA50527168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 8 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 8 SAMEA50527168 sequencing assay ERX1861061 Unstim-single8_S28_L004_R2_001.fastq.gz Unstim-single8_S28_L004_R2_001.fastq.gz ERR1797496 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797496/ERR1797496_2.fastq.gz 162 82 immortal cell line cell none CL-Unstim 8 +CL-Unstim 9 ERS1505485 SAMEA50527918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 9 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 9 SAMEA50527918 sequencing assay ERX1861062 Unstim-single9_S29_L001_R1_001.fastq.gz Unstim-single9_S29_L001_R1_001.fastq.gz ERR1797497 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797497/ERR1797497_1.fastq.gz 254 128 immortal cell line cell none CL-Unstim 9 +CL-Unstim 9 ERS1505485 SAMEA50527918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 9 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 9 SAMEA50527918 sequencing assay ERX1861062 Unstim-single9_S29_L001_R2_001.fastq.gz Unstim-single9_S29_L001_R2_001.fastq.gz ERR1797497 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797497/ERR1797497_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 9 +CL-Unstim 9 ERS1505485 SAMEA50527918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 9 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 9 SAMEA50527918 sequencing assay ERX1861062 Unstim-single9_S29_L002_R1_001.fastq.gz Unstim-single9_S29_L002_R1_001.fastq.gz ERR1797498 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797498/ERR1797498_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 9 +CL-Unstim 9 ERS1505485 SAMEA50527918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 9 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 9 SAMEA50527918 sequencing assay ERX1861062 Unstim-single9_S29_L002_R2_001.fastq.gz Unstim-single9_S29_L002_R2_001.fastq.gz ERR1797498 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797498/ERR1797498_2.fastq.gz 70 36 immortal cell line cell none CL-Unstim 9 +CL-Unstim 9 ERS1505485 SAMEA50527918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 9 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 9 SAMEA50527918 sequencing assay ERX1861062 Unstim-single9_S29_L003_R1_001.fastq.gz Unstim-single9_S29_L003_R1_001.fastq.gz ERR1797499 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797499/ERR1797499_1.fastq.gz 252 127 immortal cell line cell none CL-Unstim 9 +CL-Unstim 9 ERS1505485 SAMEA50527918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 9 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 9 SAMEA50527918 sequencing assay ERX1861062 Unstim-single9_S29_L003_R2_001.fastq.gz Unstim-single9_S29_L003_R2_001.fastq.gz ERR1797499 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797499/ERR1797499_2.fastq.gz 252 127 immortal cell line cell none CL-Unstim 9 +CL-Unstim 9 ERS1505485 SAMEA50527918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 9 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 9 SAMEA50527918 sequencing assay ERX1861062 Unstim-single9_S29_L004_R1_001.fastq.gz Unstim-single9_S29_L004_R1_001.fastq.gz ERR1797500 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797500/ERR1797500_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 9 +CL-Unstim 9 ERS1505485 SAMEA50527918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 9 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 9 SAMEA50527918 sequencing assay ERX1861062 Unstim-single9_S29_L004_R2_001.fastq.gz Unstim-single9_S29_L004_R2_001.fastq.gz ERR1797500 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797500/ERR1797500_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 9 +CL-Stim 19 ERS1505486 SAMEA50528668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 19 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 19 SAMEA50528668 sequencing assay ERX1861063 Stim-ten1_S19_L001_R1_001.fastq.gz Stim-ten1_S19_L001_R1_001.fastq.gz ERR1797501 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797501/ERR1797501_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 19 +CL-Stim 19 ERS1505486 SAMEA50528668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 19 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 19 SAMEA50528668 sequencing assay ERX1861063 Stim-ten1_S19_L001_R2_001.fastq.gz Stim-ten1_S19_L001_R2_001.fastq.gz ERR1797501 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797501/ERR1797501_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 19 +CL-Stim 19 ERS1505486 SAMEA50528668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 19 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 19 SAMEA50528668 sequencing assay ERX1861063 Stim-ten1_S19_L002_R1_001.fastq.gz Stim-ten1_S19_L002_R1_001.fastq.gz ERR1797502 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797502/ERR1797502_1.fastq.gz 154 78 immortal cell line cell CINGVCWTV peptide CL-Stim 19 +CL-Stim 19 ERS1505486 SAMEA50528668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 19 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 19 SAMEA50528668 sequencing assay ERX1861063 Stim-ten1_S19_L002_R2_001.fastq.gz Stim-ten1_S19_L002_R2_001.fastq.gz ERR1797502 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797502/ERR1797502_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 19 +CL-Stim 19 ERS1505486 SAMEA50528668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 19 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 19 SAMEA50528668 sequencing assay ERX1861063 Stim-ten1_S19_L003_R1_001.fastq.gz Stim-ten1_S19_L003_R1_001.fastq.gz ERR1797503 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797503/ERR1797503_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 19 +CL-Stim 19 ERS1505486 SAMEA50528668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 19 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 19 SAMEA50528668 sequencing assay ERX1861063 Stim-ten1_S19_L003_R2_001.fastq.gz Stim-ten1_S19_L003_R2_001.fastq.gz ERR1797503 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797503/ERR1797503_2.fastq.gz 300 151 immortal cell line cell CINGVCWTV peptide CL-Stim 19 +CL-Stim 19 ERS1505486 SAMEA50528668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 19 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 19 SAMEA50528668 sequencing assay ERX1861063 Stim-ten1_S19_L004_R1_001.fastq.gz Stim-ten1_S19_L004_R1_001.fastq.gz ERR1797504 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797504/ERR1797504_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 19 +CL-Stim 19 ERS1505486 SAMEA50528668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 19 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 19 SAMEA50528668 sequencing assay ERX1861063 Stim-ten1_S19_L004_R2_001.fastq.gz Stim-ten1_S19_L004_R2_001.fastq.gz ERR1797504 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797504/ERR1797504_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 19 +CL-Stim 20 ERS1505487 SAMEA50529418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 20 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 20 SAMEA50529418 sequencing assay ERX1861064 Stim-ten2_S20_L001_R1_001.fastq.gz Stim-ten2_S20_L001_R1_001.fastq.gz ERR1797505 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797505/ERR1797505_1.fastq.gz 282 142 immortal cell line cell CINGVCWTV peptide CL-Stim 20 +CL-Stim 20 ERS1505487 SAMEA50529418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 20 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 20 SAMEA50529418 sequencing assay ERX1861064 Stim-ten2_S20_L001_R2_001.fastq.gz Stim-ten2_S20_L001_R2_001.fastq.gz ERR1797505 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797505/ERR1797505_2.fastq.gz 70 36 immortal cell line cell CINGVCWTV peptide CL-Stim 20 +CL-Stim 20 ERS1505487 SAMEA50529418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 20 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 20 SAMEA50529418 sequencing assay ERX1861064 Stim-ten2_S20_L002_R1_001.fastq.gz Stim-ten2_S20_L002_R1_001.fastq.gz ERR1797506 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797506/ERR1797506_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 20 +CL-Stim 20 ERS1505487 SAMEA50529418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 20 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 20 SAMEA50529418 sequencing assay ERX1861064 Stim-ten2_S20_L002_R2_001.fastq.gz Stim-ten2_S20_L002_R2_001.fastq.gz ERR1797506 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797506/ERR1797506_2.fastq.gz 70 36 immortal cell line cell CINGVCWTV peptide CL-Stim 20 +CL-Stim 20 ERS1505487 SAMEA50529418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 20 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 20 SAMEA50529418 sequencing assay ERX1861064 Stim-ten2_S20_L003_R1_001.fastq.gz Stim-ten2_S20_L003_R1_001.fastq.gz ERR1797507 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797507/ERR1797507_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 20 +CL-Stim 20 ERS1505487 SAMEA50529418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 20 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 20 SAMEA50529418 sequencing assay ERX1861064 Stim-ten2_S20_L003_R2_001.fastq.gz Stim-ten2_S20_L003_R2_001.fastq.gz ERR1797507 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797507/ERR1797507_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 20 +CL-Stim 20 ERS1505487 SAMEA50529418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 20 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 20 SAMEA50529418 sequencing assay ERX1861064 Stim-ten2_S20_L004_R1_001.fastq.gz Stim-ten2_S20_L004_R1_001.fastq.gz ERR1797508 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797508/ERR1797508_1.fastq.gz 160 81 immortal cell line cell CINGVCWTV peptide CL-Stim 20 +CL-Stim 20 ERS1505487 SAMEA50529418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 20 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 20 SAMEA50529418 sequencing assay ERX1861064 Stim-ten2_S20_L004_R2_001.fastq.gz Stim-ten2_S20_L004_R2_001.fastq.gz ERR1797508 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797508/ERR1797508_2.fastq.gz 160 81 immortal cell line cell CINGVCWTV peptide CL-Stim 20 +CL-Unstim 19 ERS1505488 SAMEA50530168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 19 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 19 SAMEA50530168 sequencing assay ERX1861065 Unstim-ten1_S39_L001_R1_001.fastq.gz Unstim-ten1_S39_L001_R1_001.fastq.gz ERR1797509 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797509/ERR1797509_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 19 +CL-Unstim 19 ERS1505488 SAMEA50530168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 19 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 19 SAMEA50530168 sequencing assay ERX1861065 Unstim-ten1_S39_L001_R2_001.fastq.gz Unstim-ten1_S39_L001_R2_001.fastq.gz ERR1797509 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797509/ERR1797509_2.fastq.gz 70 36 immortal cell line cell none CL-Unstim 19 +CL-Unstim 19 ERS1505488 SAMEA50530168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 19 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 19 SAMEA50530168 sequencing assay ERX1861065 Unstim-ten1_S39_L002_R1_001.fastq.gz Unstim-ten1_S39_L002_R1_001.fastq.gz ERR1797510 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797510/ERR1797510_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 19 +CL-Unstim 19 ERS1505488 SAMEA50530168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 19 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 19 SAMEA50530168 sequencing assay ERX1861065 Unstim-ten1_S39_L002_R2_001.fastq.gz Unstim-ten1_S39_L002_R2_001.fastq.gz ERR1797510 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797510/ERR1797510_2.fastq.gz 70 36 immortal cell line cell none CL-Unstim 19 +CL-Unstim 19 ERS1505488 SAMEA50530168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 19 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 19 SAMEA50530168 sequencing assay ERX1861065 Unstim-ten1_S39_L003_R1_001.fastq.gz Unstim-ten1_S39_L003_R1_001.fastq.gz ERR1797511 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797511/ERR1797511_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 19 +CL-Unstim 19 ERS1505488 SAMEA50530168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 19 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 19 SAMEA50530168 sequencing assay ERX1861065 Unstim-ten1_S39_L003_R2_001.fastq.gz Unstim-ten1_S39_L003_R2_001.fastq.gz ERR1797511 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797511/ERR1797511_2.fastq.gz 298 150 immortal cell line cell none CL-Unstim 19 +CL-Unstim 19 ERS1505488 SAMEA50530168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 19 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 19 SAMEA50530168 sequencing assay ERX1861065 Unstim-ten1_S39_L004_R1_001.fastq.gz Unstim-ten1_S39_L004_R1_001.fastq.gz ERR1797512 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797512/ERR1797512_1.fastq.gz 300 151 immortal cell line cell none CL-Unstim 19 +CL-Unstim 19 ERS1505488 SAMEA50530168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 19 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 19 SAMEA50530168 sequencing assay ERX1861065 Unstim-ten1_S39_L004_R2_001.fastq.gz Unstim-ten1_S39_L004_R2_001.fastq.gz ERR1797512 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797512/ERR1797512_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 19 +CL-Unstim 20 ERS1505489 SAMEA50530918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 20 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 20 SAMEA50530918 sequencing assay ERX1861066 Unstim-ten2_S40_L001_R1_001.fastq.gz Unstim-ten2_S40_L001_R1_001.fastq.gz ERR1797513 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797513/ERR1797513_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 20 +CL-Unstim 20 ERS1505489 SAMEA50530918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 20 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 20 SAMEA50530918 sequencing assay ERX1861066 Unstim-ten2_S40_L001_R2_001.fastq.gz Unstim-ten2_S40_L001_R2_001.fastq.gz ERR1797513 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797513/ERR1797513_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 20 +CL-Unstim 20 ERS1505489 SAMEA50530918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 20 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 20 SAMEA50530918 sequencing assay ERX1861066 Unstim-ten2_S40_L002_R1_001.fastq.gz Unstim-ten2_S40_L002_R1_001.fastq.gz ERR1797514 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797514/ERR1797514_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 20 +CL-Unstim 20 ERS1505489 SAMEA50530918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 20 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 20 SAMEA50530918 sequencing assay ERX1861066 Unstim-ten2_S40_L002_R2_001.fastq.gz Unstim-ten2_S40_L002_R2_001.fastq.gz ERR1797514 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797514/ERR1797514_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 20 +CL-Unstim 20 ERS1505489 SAMEA50530918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 20 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 20 SAMEA50530918 sequencing assay ERX1861066 Unstim-ten2_S40_L003_R1_001.fastq.gz Unstim-ten2_S40_L003_R1_001.fastq.gz ERR1797515 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797515/ERR1797515_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 20 +CL-Unstim 20 ERS1505489 SAMEA50530918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 20 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 20 SAMEA50530918 sequencing assay ERX1861066 Unstim-ten2_S40_L003_R2_001.fastq.gz Unstim-ten2_S40_L003_R2_001.fastq.gz ERR1797515 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797515/ERR1797515_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 20 +CL-Unstim 20 ERS1505489 SAMEA50530918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 20 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 20 SAMEA50530918 sequencing assay ERX1861066 Unstim-ten2_S40_L004_R1_001.fastq.gz Unstim-ten2_S40_L004_R1_001.fastq.gz ERR1797516 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797516/ERR1797516_1.fastq.gz 196 99 immortal cell line cell none CL-Unstim 20 +CL-Unstim 20 ERS1505489 SAMEA50530918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 20 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 20 SAMEA50530918 sequencing assay ERX1861066 Unstim-ten2_S40_L004_R2_001.fastq.gz Unstim-ten2_S40_L004_R2_001.fastq.gz ERR1797516 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797516/ERR1797516_2.fastq.gz 196 99 immortal cell line cell none CL-Unstim 20 +PB-T cell 21 ERS1505490 SAMEA50531668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 21 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 250 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 21 SAMEA50531668 sequencing assay ERX1861067 AE24_S3_L001_1.fastq.gz AE24_S3_L001_1.fastq.gz ERR1797517 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797517/ERR1797517_1.fastq.gz 134 68 primary cell none PB-T cell 21 +PB-T cell 21 ERS1505490 SAMEA50531668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 21 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 250 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 21 SAMEA50531668 sequencing assay ERX1861067 AE24_S3_L001_2.fastq.gz AE24_S3_L001_2.fastq.gz ERR1797517 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797517/ERR1797517_2.fastq.gz 422 212 primary cell none PB-T cell 21 +PB-T cell 22 ERS1505491 SAMEA50532418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 22 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 250 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 22 SAMEA50532418 sequencing assay ERX1861068 AE25_S4_L001_1.fastq.gz AE25_S4_L001_1.fastq.gz ERR1797518 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797518/ERR1797518_1.fastq.gz 142 72 primary cell none PB-T cell 22 +PB-T cell 22 ERS1505491 SAMEA50532418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 22 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 250 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 22 SAMEA50532418 sequencing assay ERX1861068 AE25_S4_L001_2.fastq.gz AE25_S4_L001_2.fastq.gz ERR1797518 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797518/ERR1797518_2.fastq.gz 386 194 primary cell none PB-T cell 22 +PB-T cell 23 ERS1505492 SAMEA50533168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 23 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 250 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 23 SAMEA50533168 sequencing assay ERX1861069 AE26_S5_L001_1.fastq.gz AE26_S5_L001_1.fastq.gz ERR1797519 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797519/ERR1797519_1.fastq.gz 144 73 primary cell none PB-T cell 23 +PB-T cell 23 ERS1505492 SAMEA50533168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 23 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 250 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 23 SAMEA50533168 sequencing assay ERX1861069 AE26_S5_L001_2.fastq.gz AE26_S5_L001_2.fastq.gz ERR1797519 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797519/ERR1797519_2.fastq.gz 464 233 primary cell none PB-T cell 23 +PB-T cell 24 ERS1505493 SAMEA50533918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 10 cells not OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 24 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 250 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 24 SAMEA50533918 sequencing assay ERX1861070 AE27_S6_L001_1.fastq.gz AE27_S6_L001_1.fastq.gz ERR1797520 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797520/ERR1797520_1.fastq.gz 142 72 primary cell none PB-T cell 24 +PB-T cell 24 ERS1505493 SAMEA50533918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 10 cells not OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 24 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 250 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 24 SAMEA50533918 sequencing assay ERX1861070 AE27_S6_L001_2.fastq.gz AE27_S6_L001_2.fastq.gz ERR1797520 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797520/ERR1797520_2.fastq.gz 514 258 primary cell none PB-T cell 24 +CL-Stim 21 ERS1505494 SAMEA50534668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 21 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 250 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 21 SAMEA50534668 sequencing assay ERX1861071 AE20_S5_L001_1.fastq.gz AE20_S5_L001_1.fastq.gz ERR1797521 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797521/ERR1797521_1.fastq.gz 132 67 immortal cell line cell CINGVCWTV peptide CL-Stim 21 +CL-Stim 21 ERS1505494 SAMEA50534668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 21 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 250 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 21 SAMEA50534668 sequencing assay ERX1861071 AE20_S5_L001_2.fastq.gz AE20_S5_L001_2.fastq.gz ERR1797521 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797521/ERR1797521_2.fastq.gz 146 74 immortal cell line cell CINGVCWTV peptide CL-Stim 21 +CL-Stim 22 ERS1505495 SAMEA50535418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 22 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 250 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 22 SAMEA50535418 sequencing assay ERX1861072 AE21_S6_L001_1.fastq.gz AE21_S6_L001_1.fastq.gz ERR1797522 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797522/ERR1797522_1.fastq.gz 146 74 immortal cell line cell CINGVCWTV peptide CL-Stim 22 +CL-Stim 22 ERS1505495 SAMEA50535418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 22 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 250 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 22 SAMEA50535418 sequencing assay ERX1861072 AE21_S6_L001_2.fastq.gz AE21_S6_L001_2.fastq.gz ERR1797522 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797522/ERR1797522_2.fastq.gz 116 59 immortal cell line cell CINGVCWTV peptide CL-Stim 22 +CL-Stim 23 ERS1505496 SAMEA50536168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 23 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 250 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 23 SAMEA50536168 sequencing assay ERX1861073 AE22_S1_L001_1.fastq.gz AE22_S1_L001_1.fastq.gz ERR1797523 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797523/ERR1797523_1.fastq.gz 138 70 immortal cell line cell CINGVCWTV peptide CL-Stim 23 +CL-Stim 23 ERS1505496 SAMEA50536168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 23 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 250 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 23 SAMEA50536168 sequencing assay ERX1861073 AE22_S1_L001_2.fastq.gz AE22_S1_L001_2.fastq.gz ERR1797523 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797523/ERR1797523_2.fastq.gz 212 107 immortal cell line cell CINGVCWTV peptide CL-Stim 23 +CL-Unstim21 ERS1505497 SAMEA50536918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim21 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 250 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim21 SAMEA50536918 sequencing assay ERX1861074 AE16_S1_L001_1.fastq.gz AE16_S1_L001_1.fastq.gz ERR1797524 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797524/ERR1797524_1.fastq.gz 152 77 immortal cell line cell none CL-Unstim21 +CL-Unstim21 ERS1505497 SAMEA50536918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim21 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 250 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim21 SAMEA50536918 sequencing assay ERX1861074 AE16_S1_L001_2.fastq.gz AE16_S1_L001_2.fastq.gz ERR1797524 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797524/ERR1797524_2.fastq.gz 180 91 immortal cell line cell none CL-Unstim21 +CL-Unstim22 ERS1505498 SAMEA50537668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim22 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 250 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim22 SAMEA50537668 sequencing assay ERX1861075 AE17_S2_L001_1.fastq.gz AE17_S2_L001_1.fastq.gz ERR1797525 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797525/ERR1797525_1.fastq.gz 190 96 immortal cell line cell none CL-Unstim22 +CL-Unstim22 ERS1505498 SAMEA50537668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim22 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 250 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim22 SAMEA50537668 sequencing assay ERX1861075 AE17_S2_L001_2.fastq.gz AE17_S2_L001_2.fastq.gz ERR1797525 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797525/ERR1797525_2.fastq.gz 146 74 immortal cell line cell none CL-Unstim22 +CL-Unstim23 ERS1505499 SAMEA50538418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim23 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 250 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim23 SAMEA50538418 sequencing assay ERX1861076 AE18_S3_L001_1.fastq.gz AE18_S3_L001_1.fastq.gz ERR1797526 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797526/ERR1797526_1.fastq.gz 156 79 immortal cell line cell none CL-Unstim23 +CL-Unstim23 ERS1505499 SAMEA50538418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim23 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 250 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim23 SAMEA50538418 sequencing assay ERX1861076 AE18_S3_L001_2.fastq.gz AE18_S3_L001_2.fastq.gz ERR1797526 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797526/ERR1797526_2.fastq.gz 114 58 immortal cell line cell none CL-Unstim23 +CL-Stim 24 ERS1505500 SAMEA50539168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 24 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 250 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 24 SAMEA50539168 sequencing assay ERX1861077 AE23_S2_L001_1.fastq.gz AE23_S2_L001_1.fastq.gz ERR1797527 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797527/ERR1797527_1.fastq.gz 140 71 immortal cell line cell CINGVCWTV peptide CL-Stim 24 +CL-Stim 24 ERS1505500 SAMEA50539168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 24 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 250 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 24 SAMEA50539168 sequencing assay ERX1861077 AE23_S2_L001_2.fastq.gz AE23_S2_L001_2.fastq.gz ERR1797527 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797527/ERR1797527_2.fastq.gz 364 183 immortal cell line cell CINGVCWTV peptide CL-Stim 24 +CL-Unstim24 ERS1505501 SAMEA50539918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim24 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 250 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim24 SAMEA50539918 sequencing assay ERX1861078 AE19_S4_L001_1.fastq.gz AE19_S4_L001_1.fastq.gz ERR1797528 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797528/ERR1797528_1.fastq.gz 172 87 immortal cell line cell none CL-Unstim24 +CL-Unstim24 ERS1505501 SAMEA50539918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim24 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 250 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim24 SAMEA50539918 sequencing assay ERX1861078 AE19_S4_L001_2.fastq.gz AE19_S4_L001_2.fastq.gz ERR1797528 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797528/ERR1797528_2.fastq.gz 204 103 immortal cell line cell none CL-Unstim24 From 120fe6b68f8c57f2a38e8bc0a44ba6e592fd8e96 Mon Sep 17 00:00:00 2001 From: Pedro Madrigal Date: Fri, 17 May 2024 19:10:11 +0100 Subject: [PATCH 05/13] update actions versions --- .github/workflows/sdrfToNfConf_test.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/sdrfToNfConf_test.yml b/.github/workflows/sdrfToNfConf_test.yml index fc1c3bd..b2f540c 100644 --- a/.github/workflows/sdrfToNfConf_test.yml +++ b/.github/workflows/sdrfToNfConf_test.yml @@ -13,10 +13,10 @@ jobs: runs-on: ubuntu-latest steps: - name: checkout code - uses: actions/checkout@v2 + uses: actions/checkout@v3 - name: set up R - uses: r-lib/actions/setup-r@v1 + uses: r-lib/actions/setup-r@v2 - name: install dependencies run: | From d4d3acd4d3ef722d9360a670dab2428ad4ad1462 Mon Sep 17 00:00:00 2001 From: Pedro Madrigal Date: Fri, 17 May 2024 19:30:19 +0100 Subject: [PATCH 06/13] edit G-Action dependencies --- .github/workflows/sdrfToNfConf_test.yml | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/.github/workflows/sdrfToNfConf_test.yml b/.github/workflows/sdrfToNfConf_test.yml index b2f540c..b611e68 100644 --- a/.github/workflows/sdrfToNfConf_test.yml +++ b/.github/workflows/sdrfToNfConf_test.yml @@ -21,7 +21,8 @@ jobs: - name: install dependencies run: | Rscript -e 'install.packages(c("data.table", "optparse", "devtools"), repos="https://cran.rstudio.com")' - Rscript -e 'devtools::install_github('https://github.com/ebi-gene-expression-group/workflowscriptscommon', ref='develop')' + Rscript -e 'install.packages(c("usethis", "pkgdown", "rcmdcheck", "rversions", "urlchecker"), repos="https://cran.rstudio.com")' + Rscript -e 'remotes::install_github("ebi-gene-expression-group/workflowscriptscommon", ref="develop")' - name: run test run: | set -e From 46edf8e1bfd2353d698305b0c8f323067b1bd215 Mon Sep 17 00:00:00 2001 From: Pedro Madrigal Date: Fri, 17 May 2024 19:41:48 +0100 Subject: [PATCH 07/13] rm devtools from dependencies --- .github/workflows/sdrfToNfConf_test.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/sdrfToNfConf_test.yml b/.github/workflows/sdrfToNfConf_test.yml index b611e68..1f2853e 100644 --- a/.github/workflows/sdrfToNfConf_test.yml +++ b/.github/workflows/sdrfToNfConf_test.yml @@ -20,7 +20,7 @@ jobs: - name: install dependencies run: | - Rscript -e 'install.packages(c("data.table", "optparse", "devtools"), repos="https://cran.rstudio.com")' + Rscript -e 'install.packages(c("data.table", "optparse"), repos="https://cran.rstudio.com")' Rscript -e 'install.packages(c("usethis", "pkgdown", "rcmdcheck", "rversions", "urlchecker"), repos="https://cran.rstudio.com")' Rscript -e 'remotes::install_github("ebi-gene-expression-group/workflowscriptscommon", ref="develop")' - name: run test From 367ae965807fc39aedde5326dfa4e1d945a08307 Mon Sep 17 00:00:00 2001 From: Pedro Madrigal Date: Fri, 17 May 2024 19:47:46 +0100 Subject: [PATCH 08/13] fix dependencies --- .github/workflows/sdrfToNfConf_test.yml | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/.github/workflows/sdrfToNfConf_test.yml b/.github/workflows/sdrfToNfConf_test.yml index 1f2853e..deea90d 100644 --- a/.github/workflows/sdrfToNfConf_test.yml +++ b/.github/workflows/sdrfToNfConf_test.yml @@ -20,8 +20,7 @@ jobs: - name: install dependencies run: | - Rscript -e 'install.packages(c("data.table", "optparse"), repos="https://cran.rstudio.com")' - Rscript -e 'install.packages(c("usethis", "pkgdown", "rcmdcheck", "rversions", "urlchecker"), repos="https://cran.rstudio.com")' + Rscript -e 'install.packages(c("data.table", "optparse", "remotes"), repos="https://cran.rstudio.com")' Rscript -e 'remotes::install_github("ebi-gene-expression-group/workflowscriptscommon", ref="develop")' - name: run test run: | From 3760df1fb797a9e2bf1f1964d85f149007a18f68 Mon Sep 17 00:00:00 2001 From: Pedro Madrigal Date: Fri, 17 May 2024 20:35:47 +0100 Subject: [PATCH 09/13] modify dependencies --- .github/workflows/sdrfToNfConf_test.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/sdrfToNfConf_test.yml b/.github/workflows/sdrfToNfConf_test.yml index deea90d..94dc858 100644 --- a/.github/workflows/sdrfToNfConf_test.yml +++ b/.github/workflows/sdrfToNfConf_test.yml @@ -20,8 +20,8 @@ jobs: - name: install dependencies run: | - Rscript -e 'install.packages(c("data.table", "optparse", "remotes"), repos="https://cran.rstudio.com")' - Rscript -e 'remotes::install_github("ebi-gene-expression-group/workflowscriptscommon", ref="develop")' + Rscript -e 'install.packages(c("data.table", "optparse", "devtools"))' + Rscript -e 'devtools::install_github("ebi-gene-expression-group/workflow-scripts-common")' - name: run test run: | set -e From 141c2d766d1b5062551de7ac0772f7bd1884be09 Mon Sep 17 00:00:00 2001 From: Pedro Madrigal Date: Fri, 17 May 2024 20:50:40 +0100 Subject: [PATCH 10/13] install devtools related dependencies --- .github/workflows/sdrfToNfConf_test.yml | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/.github/workflows/sdrfToNfConf_test.yml b/.github/workflows/sdrfToNfConf_test.yml index 94dc858..52a38d3 100644 --- a/.github/workflows/sdrfToNfConf_test.yml +++ b/.github/workflows/sdrfToNfConf_test.yml @@ -17,7 +17,10 @@ jobs: - name: set up R uses: r-lib/actions/setup-r@v2 - + + - name: install devtools related dependencies + run: sudo apt install build-essential libcurl4-gnutls-dev libxml2-dev libssl-dev + - name: install dependencies run: | Rscript -e 'install.packages(c("data.table", "optparse", "devtools"))' From af63c2a4cdba1bf338ccec59242d8eddf1103cc3 Mon Sep 17 00:00:00 2001 From: Pedro Madrigal <8195212+pmb59@users.noreply.github.com> Date: Fri, 17 May 2024 22:07:41 +0100 Subject: [PATCH 11/13] pin r version --- .github/workflows/sdrfToNfConf_test.yml | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/.github/workflows/sdrfToNfConf_test.yml b/.github/workflows/sdrfToNfConf_test.yml index 52a38d3..f3ff63e 100644 --- a/.github/workflows/sdrfToNfConf_test.yml +++ b/.github/workflows/sdrfToNfConf_test.yml @@ -17,9 +17,11 @@ jobs: - name: set up R uses: r-lib/actions/setup-r@v2 - + with: + r-version: 3.6.3 + - name: install devtools related dependencies - run: sudo apt install build-essential libcurl4-gnutls-dev libxml2-dev libssl-dev + run: sudo apt install build-essential libcurl4-gnutls-dev libxml2-dev libssl-dev libcurl4-openssl-dev libbz2-dev liblzma-dev - name: install dependencies run: | From 07395a47ec1520f4f6af336f36ebefc246a5ac41 Mon Sep 17 00:00:00 2001 From: Pedro Madrigal <8195212+pmb59@users.noreply.github.com> Date: Fri, 17 May 2024 22:10:08 +0100 Subject: [PATCH 12/13] Update sdrfToNfConf_test.yml --- .github/workflows/sdrfToNfConf_test.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/sdrfToNfConf_test.yml b/.github/workflows/sdrfToNfConf_test.yml index f3ff63e..aea3eb4 100644 --- a/.github/workflows/sdrfToNfConf_test.yml +++ b/.github/workflows/sdrfToNfConf_test.yml @@ -21,7 +21,7 @@ jobs: r-version: 3.6.3 - name: install devtools related dependencies - run: sudo apt install build-essential libcurl4-gnutls-dev libxml2-dev libssl-dev libcurl4-openssl-dev libbz2-dev liblzma-dev + run: sudo apt install build-essential libcurl4-gnutls-dev libxml2-dev libssl-dev - name: install dependencies run: | From ba945b132aca119b1bb8a33bb1743dde6284dbe6 Mon Sep 17 00:00:00 2001 From: Pedro Madrigal Date: Mon, 20 May 2024 10:50:03 +0100 Subject: [PATCH 13/13] Removing github action - we can address this in another pull-request --- .github/workflows/sdrfToNfConf_test.yml | 37 -- tests/E-MTAB-4850.homo_sapiens.idf.txt | 72 ---- tests/E-MTAB-4850.homo_sapiens.sdrf.txt | 505 ------------------------ 3 files changed, 614 deletions(-) delete mode 100644 .github/workflows/sdrfToNfConf_test.yml delete mode 100644 tests/E-MTAB-4850.homo_sapiens.idf.txt delete mode 100644 tests/E-MTAB-4850.homo_sapiens.sdrf.txt diff --git a/.github/workflows/sdrfToNfConf_test.yml b/.github/workflows/sdrfToNfConf_test.yml deleted file mode 100644 index aea3eb4..0000000 --- a/.github/workflows/sdrfToNfConf_test.yml +++ /dev/null @@ -1,37 +0,0 @@ -name: R script check - -on: - push: - branches: - - develop - pull_request: - branches: - - develop - -jobs: - run_script: - runs-on: ubuntu-latest - steps: - - name: checkout code - uses: actions/checkout@v3 - - - name: set up R - uses: r-lib/actions/setup-r@v2 - with: - r-version: 3.6.3 - - - name: install devtools related dependencies - run: sudo apt install build-essential libcurl4-gnutls-dev libxml2-dev libssl-dev - - - name: install dependencies - run: | - Rscript -e 'install.packages(c("data.table", "optparse", "devtools"))' - Rscript -e 'devtools::install_github("ebi-gene-expression-group/workflow-scripts-common")' - - name: run test - run: | - set -e - out_test1=$(pwd)/test1 - Rscript bin/sdrfToNfConf.R --sdrf=tests/E-MTAB-4850.homo_sapiens.sdrf.txt --idf=tests/E-MTAB-4850.homo_sapiens.idf.txt --name=E-MTAB-4850 --verbose --out_conf $out_test1 - - - name: check for errors - run: Rscript -e 'stopifnot(identical(geterrmessage(), ""))' diff --git a/tests/E-MTAB-4850.homo_sapiens.idf.txt b/tests/E-MTAB-4850.homo_sapiens.idf.txt deleted file mode 100644 index fd6517b..0000000 --- a/tests/E-MTAB-4850.homo_sapiens.idf.txt +++ /dev/null @@ -1,72 +0,0 @@ -MAGE-TAB Version 1.1 -Investigation Title Transcriptomic profiling of antigen-specific T cells at the single-cell level after clearance of hepatitis C virus - -Experimental Design pathogenicity design stimulus or stress design -Experimental Design Term Source REF EFO EFO -Experimental Design Term Accession Number EFO_0001761 EFO_0001762 - -Experimental Factor Name stimulus cell line single cell identifier -Experimental Factor Type stimulus cell line single cell identifier -Experimental Factor Term Source REF EFO -Experimental Factor Term Accession Number - -Person Last Name Luciani Rizzetto Eltahla -Person First Name Fabio Simone Auda -Person Mid Initials A -Person Email luciani@unsw.edu.au s.rizzetto@unsw.edu.au -Person Phone -Person Fax -Person Affiliation Systems Medicine in Infectious Diseases, Inflammation and Infection Research Centre, School of Medical Sciences, University of New South Wales, Sydney, Australia Systems Medicine in Infectious Diseases, Inflammation and Infection Research Centre, School of Medical Sciences, University of New South Wales, Sydney, Australia Systems Medicine in Infectious Diseases, Infl ammation and Infection Research Centre, School of Medical Sciences, University of New South Wales, Sydney, Australia -Person Address -Person Roles investigator data analyst;submitter experiment performer -Person Roles Term Source REF -Person Roles Term Accession Number - -Quality Control Type -Quality Control Term Source REF -Quality Control Term Accession Number - -Replicate Type -Replicate Term Source REF -Replicate Term Accession Number - -Normalization Type -Normalization Term Source REF -Normalization Term Accession Number - -Date of Experiment 2015-06-26 -Public Release Date 2017-01-31 - -PubMed ID 26860370 -Publication DOI 10.1038/icb.2016.16 -Publication Author List Auda A Eltahla, Simone Rizzetto, Mehdi R Pirozyan, Brigid D Betz-Stablein, Vanessa Venturi, Katherine Kedzierska, Andrew R Lloyd, Rowena A Bull and Fabio Luciani -Publication Title Linking the T cell receptor to the single cell transcriptome in antigen-specific human T cells -Publication Status published -Publication Status Term Source REF -Publication Status Term Accession Number - -Experiment Description We used scRNA-seq data generated using Smart-seq2 to reconstruct the native TCR from Ag-specific T cells and then to link these with the gene expression profile of individual cells. antigen specific CD8 T cells were obtained from a subject who had previously cleared hepatitis C virus (HCV) infection. A cell line was also generated from the same subject and included in the analysis with and without antigen stimulation. - -Protocol Name P-MTAB-50510 P-MTAB-51259 P-MTAB-50511 P-MTAB-50508 -Protocol Type nucleic acid library construction protocol growth protocol nucleic acid sequencing protocol sample collection protocol -Protocol Term Source REF EFO EFO EFO EFO -Protocol Term Accession Number EFO_0004184 EFO_0003789 EFO_0004170 EFO_0005518 -Protocol Description Single cell RNA sequencing was performed using Smart-seq2 as described by Picelli et al. (Picelli et al. Nature methods 2013) with the following modifications. Cell lysis buffer was prepared by adding 1 lRNase inhibitor (Clontech, Mountain View, CA) to 19 lTriton X-100 solution (0.2% v/v). Cells were sorted directly into tube containing 2 ul lysis buffer, 1 ul dNTP mix (10mM) and 1 ul oligo-dT primer at 5 M. Tubes were stored at -80 C until needed. Reverse-transcription and PCR amplification were performed as described with the exception of reducing the IS PCR primer to a 50 nM final concentration and increasing the number of cycles to 28. Sequencing libraries were prepared using the Nextera XT Library Preparation Kit (Illumina; San Diego, CA, USA) and sequencing was performed on Illumina MiSeq and NextSeq sequencing platforms. PBMC were separated from freshly collected whole blood by density gradient centrifugation, before 4 10^5 cells per well were cultured in medium (AIM-V with 1% Glutamax, 1% Penicillin-Streptomycin) supplemented with 10% heat inactivated human AB serum (Sigma, USA) in 96-well U-bottomed plates in presence of 10 g ml 1 of the CINGVCWTV peptide (aa 10731081 of HCV non-structural 3 protein). For the initial culture, the cytokines, IL-7 (10 ng ml 1, Miltenyi Biotec), IL-12 (300 g ml 1, Miltenyi Biotec) and IL-15 (10 ng ml 1, Miltenyi Biotec) were added. Fresh AIM-V media and IL-2 (20 U ml 1, Miltenyi Biotec) was added to the wells on days 4 and 7 post-stimulation. On day 10 post-stimulation, cells were re-stimulated with irradiated autologous monocytes supplemented with IL-2, IL-7, IL-12 and IL-15 in same concentrations as stated for day 1. On day 14 and 17 fresh AIM-V media containing IL-2 (U ml 1) was added to the wells. The established cell line was harvested at day 20 and cryopreserved in RPMI with 20% DMSO. Re-stimulation of the cell line was performed with 10 g ml 1 of the CINGVCWTV peptide per well (2 x 10^5 cells in each well) for 24 h. Single cells were isolated from cell lines by flow cytometry NextSeq HCV-specific CD8+ T cells were stained with NS31073-Dextramer (Immudex; Copenhagen, Denmark). Live/Dead fixable blue dye (Invitrogen) was used to exclude non-viable cells from the analysis. Subsequently, cells were washed and surface stained with the following monoclonal antibodies (mAbs): CD3-APC- Cy7, CD8-Alexa Fluor700 and CD19-PE-Cy5 (BD Biosciences). After the final wash the cells were resuspended in 500 l of PBS, 2mM EDTA and 0.5% BSA (Sigma-Aldrich, Germany) solution kept in dark at 4 C until data acquisition. After exclusion of non-viable/CD19+ cells, CD3+ CD8+ dextramer+ cells were sorted directly into 96-well PCR plates (Eppendorf) using a BD Influx cell sorter (BD Influx; BD Biosciences, Franklin Lakes, NJ) and stored at 80 oC for subsequent TCR analysis. -Protocol Parameters -Protocol Hardware NextSeq 500 -Protocol Software -Protocol Contact - -Term Source Name EFO ArrayExpress -Term Source File http://www.ebi.ac.uk/efo/ http://www.ebi.ac.uk/arrayexpress/ -Term Source Version 2.38 - -SDRF File E-MTAB-4850.homo_sapiens.sdrf.txt -Comment [Submitted Name] Transcriptomic profiling of antigen-specific T cells at the single-cell level after clearance of hepatitis C virus -Comment [SecondaryAccession] ERP020994 -Comment [SequenceDataURI] http://www.ebi.ac.uk/ena/data/view/ERR1797277-ERR1797528 -Comment [AEExperimentType] RNA-seq of coding RNA from single cells -Comment[ArrayExpressAccession] E-MTAB-4850 -Comment[EAExpectedClusters] 2 -Comment[EAExperimentType] differential -Comment[EACurator] Silvie Fexova diff --git a/tests/E-MTAB-4850.homo_sapiens.sdrf.txt b/tests/E-MTAB-4850.homo_sapiens.sdrf.txt deleted file mode 100644 index f555335..0000000 --- a/tests/E-MTAB-4850.homo_sapiens.sdrf.txt +++ /dev/null @@ -1,505 +0,0 @@ -Source Name Comment[ENA_SAMPLE] Comment[BioSD_SAMPLE] Characteristics[organism] Characteristics[disease] Characteristics[disease staging] Characteristics[age] Unit[time unit] Characteristics[sex] Characteristics[organism part] Characteristics[cell type] Characteristics[cell line] Characteristics[single cell well quality] Comment[single cell quality] Material Type Protocol REF Protocol REF Extract Name Comment[LIBRARY_LAYOUT] Comment[LIBRARY_SELECTION] Comment[LIBRARY_SOURCE] Comment[LIBRARY_STRAND] Comment[LIBRARY_STRATEGY] Comment[NOMINAL_LENGTH] Comment[NOMINAL_SDEV] Comment[ORIENTATION] Comment[single cell isolation] Comment[library construction] Comment[input molecule] Comment[primer] Comment[end bias] Protocol REF Performer Assay Name Comment[technical replicate group] Technology Type Comment[ENA_EXPERIMENT] Scan Name Comment[SUBMITTED_FILE_NAME] Comment[ENA_RUN] Comment[FASTQ_URI] Comment[SPOT_LENGTH] Comment[READ_INDEX_1_BASE_COORD] Factor value[cell line] Factor Value[stimulus] Factor Value[single cell identifier] -PB-T cell 1 ERS1505430 SAMEA50486668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 1 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 1 SAMEA50486668 sequencing assay ERX1861007 PBMC-single1_S41_L001_R1_001.fastq.gz PBMC-single1_S41_L001_R1_001.fastq.gz ERR1797277 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797277/ERR1797277_1.fastq.gz 252 127 primary cell none PB-T cell 1 -PB-T cell 1 ERS1505430 SAMEA50486668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 1 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 1 SAMEA50486668 sequencing assay ERX1861007 PBMC-single1_S41_L001_R2_001.fastq.gz PBMC-single1_S41_L001_R2_001.fastq.gz ERR1797277 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797277/ERR1797277_2.fastq.gz 302 152 primary cell none PB-T cell 1 -PB-T cell 1 ERS1505430 SAMEA50486668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 1 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 1 SAMEA50486668 sequencing assay ERX1861007 PBMC-single1_S41_L002_R1_001.fastq.gz PBMC-single1_S41_L002_R1_001.fastq.gz ERR1797278 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797278/ERR1797278_1.fastq.gz 226 114 primary cell none PB-T cell 1 -PB-T cell 1 ERS1505430 SAMEA50486668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 1 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 1 SAMEA50486668 sequencing assay ERX1861007 PBMC-single1_S41_L002_R2_001.fastq.gz PBMC-single1_S41_L002_R2_001.fastq.gz ERR1797278 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797278/ERR1797278_2.fastq.gz 302 152 primary cell none PB-T cell 1 -PB-T cell 1 ERS1505430 SAMEA50486668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 1 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 1 SAMEA50486668 sequencing assay ERX1861007 PBMC-single1_S41_L003_R1_001.fastq.gz PBMC-single1_S41_L003_R1_001.fastq.gz ERR1797279 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797279/ERR1797279_1.fastq.gz 302 152 primary cell none PB-T cell 1 -PB-T cell 1 ERS1505430 SAMEA50486668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 1 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 1 SAMEA50486668 sequencing assay ERX1861007 PBMC-single1_S41_L003_R2_001.fastq.gz PBMC-single1_S41_L003_R2_001.fastq.gz ERR1797279 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797279/ERR1797279_2.fastq.gz 302 152 primary cell none PB-T cell 1 -PB-T cell 1 ERS1505430 SAMEA50486668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 1 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 1 SAMEA50486668 sequencing assay ERX1861007 PBMC-single1_S41_L004_R1_001.fastq.gz PBMC-single1_S41_L004_R1_001.fastq.gz ERR1797280 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797280/ERR1797280_1.fastq.gz 302 152 primary cell none PB-T cell 1 -PB-T cell 1 ERS1505430 SAMEA50486668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 1 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 1 SAMEA50486668 sequencing assay ERX1861007 PBMC-single1_S41_L004_R2_001.fastq.gz PBMC-single1_S41_L004_R2_001.fastq.gz ERR1797280 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797280/ERR1797280_2.fastq.gz 302 152 primary cell none PB-T cell 1 -PB-T cell 10 ERS1505431 SAMEA50487418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 10 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 10 SAMEA50487418 sequencing assay ERX1861008 PBMC-single10_S50_L001_R1_001.fastq.gz PBMC-single10_S50_L001_R1_001.fastq.gz ERR1797281 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797281/ERR1797281_1.fastq.gz 248 125 primary cell none PB-T cell 10 -PB-T cell 10 ERS1505431 SAMEA50487418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 10 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 10 SAMEA50487418 sequencing assay ERX1861008 PBMC-single10_S50_L001_R2_001.fastq.gz PBMC-single10_S50_L001_R2_001.fastq.gz ERR1797281 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797281/ERR1797281_2.fastq.gz 70 36 primary cell none PB-T cell 10 -PB-T cell 10 ERS1505431 SAMEA50487418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 10 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 10 SAMEA50487418 sequencing assay ERX1861008 PBMC-single10_S50_L002_R1_001.fastq.gz PBMC-single10_S50_L002_R1_001.fastq.gz ERR1797282 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797282/ERR1797282_1.fastq.gz 302 152 primary cell none PB-T cell 10 -PB-T cell 10 ERS1505431 SAMEA50487418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 10 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 10 SAMEA50487418 sequencing assay ERX1861008 PBMC-single10_S50_L002_R2_001.fastq.gz PBMC-single10_S50_L002_R2_001.fastq.gz ERR1797282 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797282/ERR1797282_2.fastq.gz 70 36 primary cell none PB-T cell 10 -PB-T cell 10 ERS1505431 SAMEA50487418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 10 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 10 SAMEA50487418 sequencing assay ERX1861008 PBMC-single10_S50_L003_R1_001.fastq.gz PBMC-single10_S50_L003_R1_001.fastq.gz ERR1797283 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797283/ERR1797283_1.fastq.gz 302 152 primary cell none PB-T cell 10 -PB-T cell 10 ERS1505431 SAMEA50487418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 10 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 10 SAMEA50487418 sequencing assay ERX1861008 PBMC-single10_S50_L003_R2_001.fastq.gz PBMC-single10_S50_L003_R2_001.fastq.gz ERR1797283 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797283/ERR1797283_2.fastq.gz 302 152 primary cell none PB-T cell 10 -PB-T cell 10 ERS1505431 SAMEA50487418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 10 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 10 SAMEA50487418 sequencing assay ERX1861008 PBMC-single10_S50_L004_R1_001.fastq.gz PBMC-single10_S50_L004_R1_001.fastq.gz ERR1797284 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797284/ERR1797284_1.fastq.gz 300 151 primary cell none PB-T cell 10 -PB-T cell 10 ERS1505431 SAMEA50487418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 10 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 10 SAMEA50487418 sequencing assay ERX1861008 PBMC-single10_S50_L004_R2_001.fastq.gz PBMC-single10_S50_L004_R2_001.fastq.gz ERR1797284 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797284/ERR1797284_2.fastq.gz 300 151 primary cell none PB-T cell 10 -PB-T cell 11 ERS1505432 SAMEA50488168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 11 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 11 SAMEA50488168 sequencing assay ERX1861009 PBMC-single11_S51_L001_R1_001.fastq.gz PBMC-single11_S51_L001_R1_001.fastq.gz ERR1797285 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797285/ERR1797285_1.fastq.gz 188 95 primary cell none PB-T cell 11 -PB-T cell 11 ERS1505432 SAMEA50488168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 11 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 11 SAMEA50488168 sequencing assay ERX1861009 PBMC-single11_S51_L001_R2_001.fastq.gz PBMC-single11_S51_L001_R2_001.fastq.gz ERR1797285 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797285/ERR1797285_2.fastq.gz 302 152 primary cell none PB-T cell 11 -PB-T cell 11 ERS1505432 SAMEA50488168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 11 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 11 SAMEA50488168 sequencing assay ERX1861009 PBMC-single11_S51_L002_R1_001.fastq.gz PBMC-single11_S51_L002_R1_001.fastq.gz ERR1797286 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797286/ERR1797286_1.fastq.gz 218 110 primary cell none PB-T cell 11 -PB-T cell 11 ERS1505432 SAMEA50488168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 11 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 11 SAMEA50488168 sequencing assay ERX1861009 PBMC-single11_S51_L002_R2_001.fastq.gz PBMC-single11_S51_L002_R2_001.fastq.gz ERR1797286 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797286/ERR1797286_2.fastq.gz 302 152 primary cell none PB-T cell 11 -PB-T cell 11 ERS1505432 SAMEA50488168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 11 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 11 SAMEA50488168 sequencing assay ERX1861009 PBMC-single11_S51_L003_R1_001.fastq.gz PBMC-single11_S51_L003_R1_001.fastq.gz ERR1797287 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797287/ERR1797287_1.fastq.gz 292 147 primary cell none PB-T cell 11 -PB-T cell 11 ERS1505432 SAMEA50488168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 11 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 11 SAMEA50488168 sequencing assay ERX1861009 PBMC-single11_S51_L003_R2_001.fastq.gz PBMC-single11_S51_L003_R2_001.fastq.gz ERR1797287 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797287/ERR1797287_2.fastq.gz 302 152 primary cell none PB-T cell 11 -PB-T cell 11 ERS1505432 SAMEA50488168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 11 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 11 SAMEA50488168 sequencing assay ERX1861009 PBMC-single11_S51_L004_R1_001.fastq.gz PBMC-single11_S51_L004_R1_001.fastq.gz ERR1797288 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797288/ERR1797288_1.fastq.gz 302 152 primary cell none PB-T cell 11 -PB-T cell 11 ERS1505432 SAMEA50488168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 11 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 11 SAMEA50488168 sequencing assay ERX1861009 PBMC-single11_S51_L004_R2_001.fastq.gz PBMC-single11_S51_L004_R2_001.fastq.gz ERR1797288 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797288/ERR1797288_2.fastq.gz 302 152 primary cell none PB-T cell 11 -PB-T cell 12 ERS1505433 SAMEA50488918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 12 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 12 SAMEA50488918 sequencing assay ERX1861010 PBMC-single12_S52_L001_R1_001.fastq.gz PBMC-single12_S52_L001_R1_001.fastq.gz ERR1797289 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797289/ERR1797289_1.fastq.gz 280 141 primary cell none PB-T cell 12 -PB-T cell 12 ERS1505433 SAMEA50488918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 12 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 12 SAMEA50488918 sequencing assay ERX1861010 PBMC-single12_S52_L001_R2_001.fastq.gz PBMC-single12_S52_L001_R2_001.fastq.gz ERR1797289 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797289/ERR1797289_2.fastq.gz 70 36 primary cell none PB-T cell 12 -PB-T cell 12 ERS1505433 SAMEA50488918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 12 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 12 SAMEA50488918 sequencing assay ERX1861010 PBMC-single12_S52_L002_R1_001.fastq.gz PBMC-single12_S52_L002_R1_001.fastq.gz ERR1797290 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797290/ERR1797290_1.fastq.gz 302 152 primary cell none PB-T cell 12 -PB-T cell 12 ERS1505433 SAMEA50488918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 12 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 12 SAMEA50488918 sequencing assay ERX1861010 PBMC-single12_S52_L002_R2_001.fastq.gz PBMC-single12_S52_L002_R2_001.fastq.gz ERR1797290 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797290/ERR1797290_2.fastq.gz 302 152 primary cell none PB-T cell 12 -PB-T cell 12 ERS1505433 SAMEA50488918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 12 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 12 SAMEA50488918 sequencing assay ERX1861010 PBMC-single12_S52_L003_R1_001.fastq.gz PBMC-single12_S52_L003_R1_001.fastq.gz ERR1797291 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797291/ERR1797291_1.fastq.gz 300 151 primary cell none PB-T cell 12 -PB-T cell 12 ERS1505433 SAMEA50488918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 12 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 12 SAMEA50488918 sequencing assay ERX1861010 PBMC-single12_S52_L003_R2_001.fastq.gz PBMC-single12_S52_L003_R2_001.fastq.gz ERR1797291 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797291/ERR1797291_2.fastq.gz 300 151 primary cell none PB-T cell 12 -PB-T cell 12 ERS1505433 SAMEA50488918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 12 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 12 SAMEA50488918 sequencing assay ERX1861010 PBMC-single12_S52_L004_R1_001.fastq.gz PBMC-single12_S52_L004_R1_001.fastq.gz ERR1797292 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797292/ERR1797292_1.fastq.gz 302 152 primary cell none PB-T cell 12 -PB-T cell 12 ERS1505433 SAMEA50488918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 12 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 12 SAMEA50488918 sequencing assay ERX1861010 PBMC-single12_S52_L004_R2_001.fastq.gz PBMC-single12_S52_L004_R2_001.fastq.gz ERR1797292 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797292/ERR1797292_2.fastq.gz 296 149 primary cell none PB-T cell 12 -PB-T cell 13 ERS1505434 SAMEA50489668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 13 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 13 SAMEA50489668 sequencing assay ERX1861011 PBMC-single13_S53_L001_R1_001.fastq.gz PBMC-single13_S53_L001_R1_001.fastq.gz ERR1797293 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797293/ERR1797293_1.fastq.gz 250 126 primary cell none PB-T cell 13 -PB-T cell 13 ERS1505434 SAMEA50489668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 13 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 13 SAMEA50489668 sequencing assay ERX1861011 PBMC-single13_S53_L001_R2_001.fastq.gz PBMC-single13_S53_L001_R2_001.fastq.gz ERR1797293 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797293/ERR1797293_2.fastq.gz 302 152 primary cell none PB-T cell 13 -PB-T cell 13 ERS1505434 SAMEA50489668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 13 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 13 SAMEA50489668 sequencing assay ERX1861011 PBMC-single13_S53_L002_R1_001.fastq.gz PBMC-single13_S53_L002_R1_001.fastq.gz ERR1797294 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797294/ERR1797294_1.fastq.gz 302 152 primary cell none PB-T cell 13 -PB-T cell 13 ERS1505434 SAMEA50489668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 13 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 13 SAMEA50489668 sequencing assay ERX1861011 PBMC-single13_S53_L002_R2_001.fastq.gz PBMC-single13_S53_L002_R2_001.fastq.gz ERR1797294 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797294/ERR1797294_2.fastq.gz 70 36 primary cell none PB-T cell 13 -PB-T cell 13 ERS1505434 SAMEA50489668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 13 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 13 SAMEA50489668 sequencing assay ERX1861011 PBMC-single13_S53_L003_R1_001.fastq.gz PBMC-single13_S53_L003_R1_001.fastq.gz ERR1797295 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797295/ERR1797295_1.fastq.gz 300 151 primary cell none PB-T cell 13 -PB-T cell 13 ERS1505434 SAMEA50489668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 13 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 13 SAMEA50489668 sequencing assay ERX1861011 PBMC-single13_S53_L003_R2_001.fastq.gz PBMC-single13_S53_L003_R2_001.fastq.gz ERR1797295 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797295/ERR1797295_2.fastq.gz 302 152 primary cell none PB-T cell 13 -PB-T cell 13 ERS1505434 SAMEA50489668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 13 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 13 SAMEA50489668 sequencing assay ERX1861011 PBMC-single13_S53_L004_R1_001.fastq.gz PBMC-single13_S53_L004_R1_001.fastq.gz ERR1797296 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797296/ERR1797296_1.fastq.gz 302 152 primary cell none PB-T cell 13 -PB-T cell 13 ERS1505434 SAMEA50489668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 13 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 13 SAMEA50489668 sequencing assay ERX1861011 PBMC-single13_S53_L004_R2_001.fastq.gz PBMC-single13_S53_L004_R2_001.fastq.gz ERR1797296 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797296/ERR1797296_2.fastq.gz 300 151 primary cell none PB-T cell 13 -PB-T cell 14 ERS1505435 SAMEA50490418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 14 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 14 SAMEA50490418 sequencing assay ERX1861012 PBMC-single14_S54_L001_R1_001.fastq.gz PBMC-single14_S54_L001_R1_001.fastq.gz ERR1797297 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797297/ERR1797297_1.fastq.gz 248 125 primary cell none PB-T cell 14 -PB-T cell 14 ERS1505435 SAMEA50490418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 14 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 14 SAMEA50490418 sequencing assay ERX1861012 PBMC-single14_S54_L001_R2_001.fastq.gz PBMC-single14_S54_L001_R2_001.fastq.gz ERR1797297 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797297/ERR1797297_2.fastq.gz 302 152 primary cell none PB-T cell 14 -PB-T cell 14 ERS1505435 SAMEA50490418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 14 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 14 SAMEA50490418 sequencing assay ERX1861012 PBMC-single14_S54_L002_R1_001.fastq.gz PBMC-single14_S54_L002_R1_001.fastq.gz ERR1797298 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797298/ERR1797298_1.fastq.gz 302 152 primary cell none PB-T cell 14 -PB-T cell 14 ERS1505435 SAMEA50490418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 14 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 14 SAMEA50490418 sequencing assay ERX1861012 PBMC-single14_S54_L002_R2_001.fastq.gz PBMC-single14_S54_L002_R2_001.fastq.gz ERR1797298 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797298/ERR1797298_2.fastq.gz 70 36 primary cell none PB-T cell 14 -PB-T cell 14 ERS1505435 SAMEA50490418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 14 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 14 SAMEA50490418 sequencing assay ERX1861012 PBMC-single14_S54_L003_R1_001.fastq.gz PBMC-single14_S54_L003_R1_001.fastq.gz ERR1797299 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797299/ERR1797299_1.fastq.gz 302 152 primary cell none PB-T cell 14 -PB-T cell 14 ERS1505435 SAMEA50490418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 14 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 14 SAMEA50490418 sequencing assay ERX1861012 PBMC-single14_S54_L003_R2_001.fastq.gz PBMC-single14_S54_L003_R2_001.fastq.gz ERR1797299 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797299/ERR1797299_2.fastq.gz 300 151 primary cell none PB-T cell 14 -PB-T cell 14 ERS1505435 SAMEA50490418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 14 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 14 SAMEA50490418 sequencing assay ERX1861012 PBMC-single14_S54_L004_R1_001.fastq.gz PBMC-single14_S54_L004_R1_001.fastq.gz ERR1797300 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797300/ERR1797300_1.fastq.gz 302 152 primary cell none PB-T cell 14 -PB-T cell 14 ERS1505435 SAMEA50490418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 14 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 14 SAMEA50490418 sequencing assay ERX1861012 PBMC-single14_S54_L004_R2_001.fastq.gz PBMC-single14_S54_L004_R2_001.fastq.gz ERR1797300 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797300/ERR1797300_2.fastq.gz 302 152 primary cell none PB-T cell 14 -PB-T cell 15 ERS1505436 SAMEA50491168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 15 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 15 SAMEA50491168 sequencing assay ERX1861013 PBMC-single15_S55_L001_R1_001.fastq.gz PBMC-single15_S55_L001_R1_001.fastq.gz ERR1797301 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797301/ERR1797301_1.fastq.gz 252 127 primary cell none PB-T cell 15 -PB-T cell 15 ERS1505436 SAMEA50491168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 15 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 15 SAMEA50491168 sequencing assay ERX1861013 PBMC-single15_S55_L001_R2_001.fastq.gz PBMC-single15_S55_L001_R2_001.fastq.gz ERR1797301 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797301/ERR1797301_2.fastq.gz 302 152 primary cell none PB-T cell 15 -PB-T cell 15 ERS1505436 SAMEA50491168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 15 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 15 SAMEA50491168 sequencing assay ERX1861013 PBMC-single15_S55_L002_R1_001.fastq.gz PBMC-single15_S55_L002_R1_001.fastq.gz ERR1797302 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797302/ERR1797302_1.fastq.gz 246 124 primary cell none PB-T cell 15 -PB-T cell 15 ERS1505436 SAMEA50491168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 15 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 15 SAMEA50491168 sequencing assay ERX1861013 PBMC-single15_S55_L002_R2_001.fastq.gz PBMC-single15_S55_L002_R2_001.fastq.gz ERR1797302 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797302/ERR1797302_2.fastq.gz 70 36 primary cell none PB-T cell 15 -PB-T cell 15 ERS1505436 SAMEA50491168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 15 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 15 SAMEA50491168 sequencing assay ERX1861013 PBMC-single15_S55_L003_R1_001.fastq.gz PBMC-single15_S55_L003_R1_001.fastq.gz ERR1797303 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797303/ERR1797303_1.fastq.gz 240 121 primary cell none PB-T cell 15 -PB-T cell 15 ERS1505436 SAMEA50491168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 15 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 15 SAMEA50491168 sequencing assay ERX1861013 PBMC-single15_S55_L003_R2_001.fastq.gz PBMC-single15_S55_L003_R2_001.fastq.gz ERR1797303 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797303/ERR1797303_2.fastq.gz 240 121 primary cell none PB-T cell 15 -PB-T cell 15 ERS1505436 SAMEA50491168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 15 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 15 SAMEA50491168 sequencing assay ERX1861013 PBMC-single15_S55_L004_R1_001.fastq.gz PBMC-single15_S55_L004_R1_001.fastq.gz ERR1797304 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797304/ERR1797304_1.fastq.gz 302 152 primary cell none PB-T cell 15 -PB-T cell 15 ERS1505436 SAMEA50491168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 15 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 15 SAMEA50491168 sequencing assay ERX1861013 PBMC-single15_S55_L004_R2_001.fastq.gz PBMC-single15_S55_L004_R2_001.fastq.gz ERR1797304 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797304/ERR1797304_2.fastq.gz 300 151 primary cell none PB-T cell 15 -PB-T cell 16 ERS1505437 SAMEA50491918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 16 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 16 SAMEA50491918 sequencing assay ERX1861014 PBMC-single16_S56_L001_R1_001.fastq.gz PBMC-single16_S56_L001_R1_001.fastq.gz ERR1797305 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797305/ERR1797305_1.fastq.gz 164 83 primary cell none PB-T cell 16 -PB-T cell 16 ERS1505437 SAMEA50491918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 16 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 16 SAMEA50491918 sequencing assay ERX1861014 PBMC-single16_S56_L001_R2_001.fastq.gz PBMC-single16_S56_L001_R2_001.fastq.gz ERR1797305 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797305/ERR1797305_2.fastq.gz 302 152 primary cell none PB-T cell 16 -PB-T cell 16 ERS1505437 SAMEA50491918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 16 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 16 SAMEA50491918 sequencing assay ERX1861014 PBMC-single16_S56_L002_R1_001.fastq.gz PBMC-single16_S56_L002_R1_001.fastq.gz ERR1797306 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797306/ERR1797306_1.fastq.gz 302 152 primary cell none PB-T cell 16 -PB-T cell 16 ERS1505437 SAMEA50491918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 16 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 16 SAMEA50491918 sequencing assay ERX1861014 PBMC-single16_S56_L002_R2_001.fastq.gz PBMC-single16_S56_L002_R2_001.fastq.gz ERR1797306 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797306/ERR1797306_2.fastq.gz 302 152 primary cell none PB-T cell 16 -PB-T cell 16 ERS1505437 SAMEA50491918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 16 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 16 SAMEA50491918 sequencing assay ERX1861014 PBMC-single16_S56_L003_R1_001.fastq.gz PBMC-single16_S56_L003_R1_001.fastq.gz ERR1797307 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797307/ERR1797307_1.fastq.gz 302 152 primary cell none PB-T cell 16 -PB-T cell 16 ERS1505437 SAMEA50491918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 16 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 16 SAMEA50491918 sequencing assay ERX1861014 PBMC-single16_S56_L003_R2_001.fastq.gz PBMC-single16_S56_L003_R2_001.fastq.gz ERR1797307 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797307/ERR1797307_2.fastq.gz 302 152 primary cell none PB-T cell 16 -PB-T cell 16 ERS1505437 SAMEA50491918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 16 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 16 SAMEA50491918 sequencing assay ERX1861014 PBMC-single16_S56_L004_R1_001.fastq.gz PBMC-single16_S56_L004_R1_001.fastq.gz ERR1797308 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797308/ERR1797308_1.fastq.gz 300 151 primary cell none PB-T cell 16 -PB-T cell 16 ERS1505437 SAMEA50491918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 16 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 16 SAMEA50491918 sequencing assay ERX1861014 PBMC-single16_S56_L004_R2_001.fastq.gz PBMC-single16_S56_L004_R2_001.fastq.gz ERR1797308 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797308/ERR1797308_2.fastq.gz 302 152 primary cell none PB-T cell 16 -PB-T cell 17 ERS1505438 SAMEA50492668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 17 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 17 SAMEA50492668 sequencing assay ERX1861015 PBMC-single17_S57_L001_R1_001.fastq.gz PBMC-single17_S57_L001_R1_001.fastq.gz ERR1797309 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797309/ERR1797309_1.fastq.gz 254 128 primary cell none PB-T cell 17 -PB-T cell 17 ERS1505438 SAMEA50492668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 17 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 17 SAMEA50492668 sequencing assay ERX1861015 PBMC-single17_S57_L001_R2_001.fastq.gz PBMC-single17_S57_L001_R2_001.fastq.gz ERR1797309 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797309/ERR1797309_2.fastq.gz 70 36 primary cell none PB-T cell 17 -PB-T cell 17 ERS1505438 SAMEA50492668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 17 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 17 SAMEA50492668 sequencing assay ERX1861015 PBMC-single17_S57_L002_R1_001.fastq.gz PBMC-single17_S57_L002_R1_001.fastq.gz ERR1797310 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797310/ERR1797310_1.fastq.gz 226 114 primary cell none PB-T cell 17 -PB-T cell 17 ERS1505438 SAMEA50492668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 17 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 17 SAMEA50492668 sequencing assay ERX1861015 PBMC-single17_S57_L002_R2_001.fastq.gz PBMC-single17_S57_L002_R2_001.fastq.gz ERR1797310 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797310/ERR1797310_2.fastq.gz 70 36 primary cell none PB-T cell 17 -PB-T cell 17 ERS1505438 SAMEA50492668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 17 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 17 SAMEA50492668 sequencing assay ERX1861015 PBMC-single17_S57_L003_R1_001.fastq.gz PBMC-single17_S57_L003_R1_001.fastq.gz ERR1797311 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797311/ERR1797311_1.fastq.gz 302 152 primary cell none PB-T cell 17 -PB-T cell 17 ERS1505438 SAMEA50492668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 17 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 17 SAMEA50492668 sequencing assay ERX1861015 PBMC-single17_S57_L003_R2_001.fastq.gz PBMC-single17_S57_L003_R2_001.fastq.gz ERR1797311 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797311/ERR1797311_2.fastq.gz 300 151 primary cell none PB-T cell 17 -PB-T cell 17 ERS1505438 SAMEA50492668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 17 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 17 SAMEA50492668 sequencing assay ERX1861015 PBMC-single17_S57_L004_R1_001.fastq.gz PBMC-single17_S57_L004_R1_001.fastq.gz ERR1797312 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797312/ERR1797312_1.fastq.gz 302 152 primary cell none PB-T cell 17 -PB-T cell 17 ERS1505438 SAMEA50492668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 17 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 17 SAMEA50492668 sequencing assay ERX1861015 PBMC-single17_S57_L004_R2_001.fastq.gz PBMC-single17_S57_L004_R2_001.fastq.gz ERR1797312 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797312/ERR1797312_2.fastq.gz 302 152 primary cell none PB-T cell 17 -PB-T cell 18 ERS1505439 SAMEA50493418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 18 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 18 SAMEA50493418 sequencing assay ERX1861016 PBMC-single18_S58_L001_R1_001.fastq.gz PBMC-single18_S58_L001_R1_001.fastq.gz ERR1797313 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797313/ERR1797313_1.fastq.gz 250 126 primary cell none PB-T cell 18 -PB-T cell 18 ERS1505439 SAMEA50493418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 18 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 18 SAMEA50493418 sequencing assay ERX1861016 PBMC-single18_S58_L001_R2_001.fastq.gz PBMC-single18_S58_L001_R2_001.fastq.gz ERR1797313 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797313/ERR1797313_2.fastq.gz 302 152 primary cell none PB-T cell 18 -PB-T cell 18 ERS1505439 SAMEA50493418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 18 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 18 SAMEA50493418 sequencing assay ERX1861016 PBMC-single18_S58_L002_R1_001.fastq.gz PBMC-single18_S58_L002_R1_001.fastq.gz ERR1797314 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797314/ERR1797314_1.fastq.gz 302 152 primary cell none PB-T cell 18 -PB-T cell 18 ERS1505439 SAMEA50493418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 18 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 18 SAMEA50493418 sequencing assay ERX1861016 PBMC-single18_S58_L002_R2_001.fastq.gz PBMC-single18_S58_L002_R2_001.fastq.gz ERR1797314 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797314/ERR1797314_2.fastq.gz 302 152 primary cell none PB-T cell 18 -PB-T cell 18 ERS1505439 SAMEA50493418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 18 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 18 SAMEA50493418 sequencing assay ERX1861016 PBMC-single18_S58_L003_R1_001.fastq.gz PBMC-single18_S58_L003_R1_001.fastq.gz ERR1797315 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797315/ERR1797315_1.fastq.gz 300 151 primary cell none PB-T cell 18 -PB-T cell 18 ERS1505439 SAMEA50493418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 18 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 18 SAMEA50493418 sequencing assay ERX1861016 PBMC-single18_S58_L003_R2_001.fastq.gz PBMC-single18_S58_L003_R2_001.fastq.gz ERR1797315 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797315/ERR1797315_2.fastq.gz 302 152 primary cell none PB-T cell 18 -PB-T cell 18 ERS1505439 SAMEA50493418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 18 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 18 SAMEA50493418 sequencing assay ERX1861016 PBMC-single18_S58_L004_R1_001.fastq.gz PBMC-single18_S58_L004_R1_001.fastq.gz ERR1797316 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797316/ERR1797316_1.fastq.gz 302 152 primary cell none PB-T cell 18 -PB-T cell 18 ERS1505439 SAMEA50493418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 18 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 18 SAMEA50493418 sequencing assay ERX1861016 PBMC-single18_S58_L004_R2_001.fastq.gz PBMC-single18_S58_L004_R2_001.fastq.gz ERR1797316 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797316/ERR1797316_2.fastq.gz 302 152 primary cell none PB-T cell 18 -PB-T cell 2 ERS1505440 SAMEA50494168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 2 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 2 SAMEA50494168 sequencing assay ERX1861017 PBMC-single2_S42_L001_R1_001.fastq.gz PBMC-single2_S42_L001_R1_001.fastq.gz ERR1797317 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797317/ERR1797317_1.fastq.gz 252 127 primary cell none PB-T cell 2 -PB-T cell 2 ERS1505440 SAMEA50494168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 2 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 2 SAMEA50494168 sequencing assay ERX1861017 PBMC-single2_S42_L001_R2_001.fastq.gz PBMC-single2_S42_L001_R2_001.fastq.gz ERR1797317 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797317/ERR1797317_2.fastq.gz 70 36 primary cell none PB-T cell 2 -PB-T cell 2 ERS1505440 SAMEA50494168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 2 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 2 SAMEA50494168 sequencing assay ERX1861017 PBMC-single2_S42_L002_R1_001.fastq.gz PBMC-single2_S42_L002_R1_001.fastq.gz ERR1797318 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797318/ERR1797318_1.fastq.gz 302 152 primary cell none PB-T cell 2 -PB-T cell 2 ERS1505440 SAMEA50494168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 2 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 2 SAMEA50494168 sequencing assay ERX1861017 PBMC-single2_S42_L002_R2_001.fastq.gz PBMC-single2_S42_L002_R2_001.fastq.gz ERR1797318 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797318/ERR1797318_2.fastq.gz 302 152 primary cell none PB-T cell 2 -PB-T cell 2 ERS1505440 SAMEA50494168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 2 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 2 SAMEA50494168 sequencing assay ERX1861017 PBMC-single2_S42_L003_R1_001.fastq.gz PBMC-single2_S42_L003_R1_001.fastq.gz ERR1797319 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797319/ERR1797319_1.fastq.gz 298 150 primary cell none PB-T cell 2 -PB-T cell 2 ERS1505440 SAMEA50494168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 2 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 2 SAMEA50494168 sequencing assay ERX1861017 PBMC-single2_S42_L003_R2_001.fastq.gz PBMC-single2_S42_L003_R2_001.fastq.gz ERR1797319 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797319/ERR1797319_2.fastq.gz 302 152 primary cell none PB-T cell 2 -PB-T cell 2 ERS1505440 SAMEA50494168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 2 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 2 SAMEA50494168 sequencing assay ERX1861017 PBMC-single2_S42_L004_R1_001.fastq.gz PBMC-single2_S42_L004_R1_001.fastq.gz ERR1797320 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797320/ERR1797320_1.fastq.gz 300 151 primary cell none PB-T cell 2 -PB-T cell 2 ERS1505440 SAMEA50494168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 2 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 2 SAMEA50494168 sequencing assay ERX1861017 PBMC-single2_S42_L004_R2_001.fastq.gz PBMC-single2_S42_L004_R2_001.fastq.gz ERR1797320 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797320/ERR1797320_2.fastq.gz 302 152 primary cell none PB-T cell 2 -PB-T cell 3 ERS1505441 SAMEA50494918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 3 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 3 SAMEA50494918 sequencing assay ERX1861018 PBMC-single3_S43_L001_R1_001.fastq.gz PBMC-single3_S43_L001_R1_001.fastq.gz ERR1797321 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797321/ERR1797321_1.fastq.gz 280 141 primary cell none PB-T cell 3 -PB-T cell 3 ERS1505441 SAMEA50494918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 3 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 3 SAMEA50494918 sequencing assay ERX1861018 PBMC-single3_S43_L001_R2_001.fastq.gz PBMC-single3_S43_L001_R2_001.fastq.gz ERR1797321 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797321/ERR1797321_2.fastq.gz 302 152 primary cell none PB-T cell 3 -PB-T cell 3 ERS1505441 SAMEA50494918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 3 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 3 SAMEA50494918 sequencing assay ERX1861018 PBMC-single3_S43_L002_R1_001.fastq.gz PBMC-single3_S43_L002_R1_001.fastq.gz ERR1797322 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797322/ERR1797322_1.fastq.gz 302 152 primary cell none PB-T cell 3 -PB-T cell 3 ERS1505441 SAMEA50494918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 3 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 3 SAMEA50494918 sequencing assay ERX1861018 PBMC-single3_S43_L002_R2_001.fastq.gz PBMC-single3_S43_L002_R2_001.fastq.gz ERR1797322 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797322/ERR1797322_2.fastq.gz 70 36 primary cell none PB-T cell 3 -PB-T cell 3 ERS1505441 SAMEA50494918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 3 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 3 SAMEA50494918 sequencing assay ERX1861018 PBMC-single3_S43_L003_R1_001.fastq.gz PBMC-single3_S43_L003_R1_001.fastq.gz ERR1797323 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797323/ERR1797323_1.fastq.gz 234 118 primary cell none PB-T cell 3 -PB-T cell 3 ERS1505441 SAMEA50494918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 3 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 3 SAMEA50494918 sequencing assay ERX1861018 PBMC-single3_S43_L003_R2_001.fastq.gz PBMC-single3_S43_L003_R2_001.fastq.gz ERR1797323 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797323/ERR1797323_2.fastq.gz 302 152 primary cell none PB-T cell 3 -PB-T cell 3 ERS1505441 SAMEA50494918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 3 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 3 SAMEA50494918 sequencing assay ERX1861018 PBMC-single3_S43_L004_R1_001.fastq.gz PBMC-single3_S43_L004_R1_001.fastq.gz ERR1797324 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797324/ERR1797324_1.fastq.gz 298 150 primary cell none PB-T cell 3 -PB-T cell 3 ERS1505441 SAMEA50494918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 3 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 3 SAMEA50494918 sequencing assay ERX1861018 PBMC-single3_S43_L004_R2_001.fastq.gz PBMC-single3_S43_L004_R2_001.fastq.gz ERR1797324 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797324/ERR1797324_2.fastq.gz 302 152 primary cell none PB-T cell 3 -PB-T cell 4 ERS1505442 SAMEA50495668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 4 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 4 SAMEA50495668 sequencing assay ERX1861019 PBMC-single4_S44_L001_R1_001.fastq.gz PBMC-single4_S44_L001_R1_001.fastq.gz ERR1797325 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797325/ERR1797325_1.fastq.gz 268 135 primary cell none PB-T cell 4 -PB-T cell 4 ERS1505442 SAMEA50495668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 4 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 4 SAMEA50495668 sequencing assay ERX1861019 PBMC-single4_S44_L001_R2_001.fastq.gz PBMC-single4_S44_L001_R2_001.fastq.gz ERR1797325 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797325/ERR1797325_2.fastq.gz 70 36 primary cell none PB-T cell 4 -PB-T cell 4 ERS1505442 SAMEA50495668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 4 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 4 SAMEA50495668 sequencing assay ERX1861019 PBMC-single4_S44_L002_R1_001.fastq.gz PBMC-single4_S44_L002_R1_001.fastq.gz ERR1797326 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797326/ERR1797326_1.fastq.gz 244 123 primary cell none PB-T cell 4 -PB-T cell 4 ERS1505442 SAMEA50495668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 4 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 4 SAMEA50495668 sequencing assay ERX1861019 PBMC-single4_S44_L002_R2_001.fastq.gz PBMC-single4_S44_L002_R2_001.fastq.gz ERR1797326 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797326/ERR1797326_2.fastq.gz 302 152 primary cell none PB-T cell 4 -PB-T cell 4 ERS1505442 SAMEA50495668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 4 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 4 SAMEA50495668 sequencing assay ERX1861019 PBMC-single4_S44_L003_R1_001.fastq.gz PBMC-single4_S44_L003_R1_001.fastq.gz ERR1797327 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797327/ERR1797327_1.fastq.gz 302 152 primary cell none PB-T cell 4 -PB-T cell 4 ERS1505442 SAMEA50495668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 4 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 4 SAMEA50495668 sequencing assay ERX1861019 PBMC-single4_S44_L003_R2_001.fastq.gz PBMC-single4_S44_L003_R2_001.fastq.gz ERR1797327 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797327/ERR1797327_2.fastq.gz 302 152 primary cell none PB-T cell 4 -PB-T cell 4 ERS1505442 SAMEA50495668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 4 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 4 SAMEA50495668 sequencing assay ERX1861019 PBMC-single4_S44_L004_R1_001.fastq.gz PBMC-single4_S44_L004_R1_001.fastq.gz ERR1797328 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797328/ERR1797328_1.fastq.gz 302 152 primary cell none PB-T cell 4 -PB-T cell 4 ERS1505442 SAMEA50495668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 4 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 4 SAMEA50495668 sequencing assay ERX1861019 PBMC-single4_S44_L004_R2_001.fastq.gz PBMC-single4_S44_L004_R2_001.fastq.gz ERR1797328 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797328/ERR1797328_2.fastq.gz 302 152 primary cell none PB-T cell 4 -PB-T cell 5 ERS1505443 SAMEA50496418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 5 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 5 SAMEA50496418 sequencing assay ERX1861020 PBMC-single5_S45_L001_R1_001.fastq.gz PBMC-single5_S45_L001_R1_001.fastq.gz ERR1797329 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797329/ERR1797329_1.fastq.gz 302 152 primary cell none PB-T cell 5 -PB-T cell 5 ERS1505443 SAMEA50496418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 5 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 5 SAMEA50496418 sequencing assay ERX1861020 PBMC-single5_S45_L001_R2_001.fastq.gz PBMC-single5_S45_L001_R2_001.fastq.gz ERR1797329 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797329/ERR1797329_2.fastq.gz 70 36 primary cell none PB-T cell 5 -PB-T cell 5 ERS1505443 SAMEA50496418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 5 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 5 SAMEA50496418 sequencing assay ERX1861020 PBMC-single5_S45_L002_R1_001.fastq.gz PBMC-single5_S45_L002_R1_001.fastq.gz ERR1797330 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797330/ERR1797330_1.fastq.gz 302 152 primary cell none PB-T cell 5 -PB-T cell 5 ERS1505443 SAMEA50496418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 5 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 5 SAMEA50496418 sequencing assay ERX1861020 PBMC-single5_S45_L002_R2_001.fastq.gz PBMC-single5_S45_L002_R2_001.fastq.gz ERR1797330 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797330/ERR1797330_2.fastq.gz 302 152 primary cell none PB-T cell 5 -PB-T cell 5 ERS1505443 SAMEA50496418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 5 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 5 SAMEA50496418 sequencing assay ERX1861020 PBMC-single5_S45_L003_R1_001.fastq.gz PBMC-single5_S45_L003_R1_001.fastq.gz ERR1797331 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797331/ERR1797331_1.fastq.gz 152 77 primary cell none PB-T cell 5 -PB-T cell 5 ERS1505443 SAMEA50496418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 5 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 5 SAMEA50496418 sequencing assay ERX1861020 PBMC-single5_S45_L003_R2_001.fastq.gz PBMC-single5_S45_L003_R2_001.fastq.gz ERR1797331 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797331/ERR1797331_2.fastq.gz 152 77 primary cell none PB-T cell 5 -PB-T cell 5 ERS1505443 SAMEA50496418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 5 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 5 SAMEA50496418 sequencing assay ERX1861020 PBMC-single5_S45_L004_R1_001.fastq.gz PBMC-single5_S45_L004_R1_001.fastq.gz ERR1797332 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797332/ERR1797332_1.fastq.gz 300 151 primary cell none PB-T cell 5 -PB-T cell 5 ERS1505443 SAMEA50496418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 5 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 5 SAMEA50496418 sequencing assay ERX1861020 PBMC-single5_S45_L004_R2_001.fastq.gz PBMC-single5_S45_L004_R2_001.fastq.gz ERR1797332 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797332/ERR1797332_2.fastq.gz 302 152 primary cell none PB-T cell 5 -PB-T cell 6 ERS1505444 SAMEA50497168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 6 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 6 SAMEA50497168 sequencing assay ERX1861021 PBMC-single6_S46_L001_R1_001.fastq.gz PBMC-single6_S46_L001_R1_001.fastq.gz ERR1797333 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797333/ERR1797333_1.fastq.gz 302 152 primary cell none PB-T cell 6 -PB-T cell 6 ERS1505444 SAMEA50497168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 6 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 6 SAMEA50497168 sequencing assay ERX1861021 PBMC-single6_S46_L001_R2_001.fastq.gz PBMC-single6_S46_L001_R2_001.fastq.gz ERR1797333 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797333/ERR1797333_2.fastq.gz 70 36 primary cell none PB-T cell 6 -PB-T cell 6 ERS1505444 SAMEA50497168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 6 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 6 SAMEA50497168 sequencing assay ERX1861021 PBMC-single6_S46_L002_R1_001.fastq.gz PBMC-single6_S46_L002_R1_001.fastq.gz ERR1797334 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797334/ERR1797334_1.fastq.gz 234 118 primary cell none PB-T cell 6 -PB-T cell 6 ERS1505444 SAMEA50497168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 6 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 6 SAMEA50497168 sequencing assay ERX1861021 PBMC-single6_S46_L002_R2_001.fastq.gz PBMC-single6_S46_L002_R2_001.fastq.gz ERR1797334 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797334/ERR1797334_2.fastq.gz 302 152 primary cell none PB-T cell 6 -PB-T cell 6 ERS1505444 SAMEA50497168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 6 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 6 SAMEA50497168 sequencing assay ERX1861021 PBMC-single6_S46_L003_R1_001.fastq.gz PBMC-single6_S46_L003_R1_001.fastq.gz ERR1797335 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797335/ERR1797335_1.fastq.gz 302 152 primary cell none PB-T cell 6 -PB-T cell 6 ERS1505444 SAMEA50497168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 6 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 6 SAMEA50497168 sequencing assay ERX1861021 PBMC-single6_S46_L003_R2_001.fastq.gz PBMC-single6_S46_L003_R2_001.fastq.gz ERR1797335 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797335/ERR1797335_2.fastq.gz 302 152 primary cell none PB-T cell 6 -PB-T cell 6 ERS1505444 SAMEA50497168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 6 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 6 SAMEA50497168 sequencing assay ERX1861021 PBMC-single6_S46_L004_R1_001.fastq.gz PBMC-single6_S46_L004_R1_001.fastq.gz ERR1797336 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797336/ERR1797336_1.fastq.gz 302 152 primary cell none PB-T cell 6 -PB-T cell 6 ERS1505444 SAMEA50497168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 6 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 6 SAMEA50497168 sequencing assay ERX1861021 PBMC-single6_S46_L004_R2_001.fastq.gz PBMC-single6_S46_L004_R2_001.fastq.gz ERR1797336 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797336/ERR1797336_2.fastq.gz 302 152 primary cell none PB-T cell 6 -PB-T cell 7 ERS1505445 SAMEA50497918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 7 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 7 SAMEA50497918 sequencing assay ERX1861022 PBMC-single7_S47_L001_R1_001.fastq.gz PBMC-single7_S47_L001_R1_001.fastq.gz ERR1797337 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797337/ERR1797337_1.fastq.gz 302 152 primary cell none PB-T cell 7 -PB-T cell 7 ERS1505445 SAMEA50497918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 7 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 7 SAMEA50497918 sequencing assay ERX1861022 PBMC-single7_S47_L001_R2_001.fastq.gz PBMC-single7_S47_L001_R2_001.fastq.gz ERR1797337 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797337/ERR1797337_2.fastq.gz 302 152 primary cell none PB-T cell 7 -PB-T cell 7 ERS1505445 SAMEA50497918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 7 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 7 SAMEA50497918 sequencing assay ERX1861022 PBMC-single7_S47_L002_R1_001.fastq.gz PBMC-single7_S47_L002_R1_001.fastq.gz ERR1797338 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797338/ERR1797338_1.fastq.gz 228 115 primary cell none PB-T cell 7 -PB-T cell 7 ERS1505445 SAMEA50497918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 7 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 7 SAMEA50497918 sequencing assay ERX1861022 PBMC-single7_S47_L002_R2_001.fastq.gz PBMC-single7_S47_L002_R2_001.fastq.gz ERR1797338 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797338/ERR1797338_2.fastq.gz 302 152 primary cell none PB-T cell 7 -PB-T cell 7 ERS1505445 SAMEA50497918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 7 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 7 SAMEA50497918 sequencing assay ERX1861022 PBMC-single7_S47_L003_R1_001.fastq.gz PBMC-single7_S47_L003_R1_001.fastq.gz ERR1797339 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797339/ERR1797339_1.fastq.gz 218 110 primary cell none PB-T cell 7 -PB-T cell 7 ERS1505445 SAMEA50497918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 7 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 7 SAMEA50497918 sequencing assay ERX1861022 PBMC-single7_S47_L003_R2_001.fastq.gz PBMC-single7_S47_L003_R2_001.fastq.gz ERR1797339 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797339/ERR1797339_2.fastq.gz 218 110 primary cell none PB-T cell 7 -PB-T cell 7 ERS1505445 SAMEA50497918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 7 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 7 SAMEA50497918 sequencing assay ERX1861022 PBMC-single7_S47_L004_R1_001.fastq.gz PBMC-single7_S47_L004_R1_001.fastq.gz ERR1797340 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797340/ERR1797340_1.fastq.gz 236 119 primary cell none PB-T cell 7 -PB-T cell 7 ERS1505445 SAMEA50497918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 7 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 7 SAMEA50497918 sequencing assay ERX1861022 PBMC-single7_S47_L004_R2_001.fastq.gz PBMC-single7_S47_L004_R2_001.fastq.gz ERR1797340 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797340/ERR1797340_2.fastq.gz 236 119 primary cell none PB-T cell 7 -PB-T cell 8 ERS1505446 SAMEA50498668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 8 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 8 SAMEA50498668 sequencing assay ERX1861023 PBMC-single8_S48_L001_R1_001.fastq.gz PBMC-single8_S48_L001_R1_001.fastq.gz ERR1797341 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797341/ERR1797341_1.fastq.gz 284 143 primary cell none PB-T cell 8 -PB-T cell 8 ERS1505446 SAMEA50498668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 8 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 8 SAMEA50498668 sequencing assay ERX1861023 PBMC-single8_S48_L001_R2_001.fastq.gz PBMC-single8_S48_L001_R2_001.fastq.gz ERR1797341 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797341/ERR1797341_2.fastq.gz 302 152 primary cell none PB-T cell 8 -PB-T cell 8 ERS1505446 SAMEA50498668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 8 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 8 SAMEA50498668 sequencing assay ERX1861023 PBMC-single8_S48_L002_R1_001.fastq.gz PBMC-single8_S48_L002_R1_001.fastq.gz ERR1797342 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797342/ERR1797342_1.fastq.gz 302 152 primary cell none PB-T cell 8 -PB-T cell 8 ERS1505446 SAMEA50498668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 8 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 8 SAMEA50498668 sequencing assay ERX1861023 PBMC-single8_S48_L002_R2_001.fastq.gz PBMC-single8_S48_L002_R2_001.fastq.gz ERR1797342 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797342/ERR1797342_2.fastq.gz 302 152 primary cell none PB-T cell 8 -PB-T cell 8 ERS1505446 SAMEA50498668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 8 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 8 SAMEA50498668 sequencing assay ERX1861023 PBMC-single8_S48_L003_R1_001.fastq.gz PBMC-single8_S48_L003_R1_001.fastq.gz ERR1797343 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797343/ERR1797343_1.fastq.gz 96 49 primary cell none PB-T cell 8 -PB-T cell 8 ERS1505446 SAMEA50498668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 8 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 8 SAMEA50498668 sequencing assay ERX1861023 PBMC-single8_S48_L003_R2_001.fastq.gz PBMC-single8_S48_L003_R2_001.fastq.gz ERR1797343 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797343/ERR1797343_2.fastq.gz 96 49 primary cell none PB-T cell 8 -PB-T cell 8 ERS1505446 SAMEA50498668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 8 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 8 SAMEA50498668 sequencing assay ERX1861023 PBMC-single8_S48_L004_R1_001.fastq.gz PBMC-single8_S48_L004_R1_001.fastq.gz ERR1797344 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797344/ERR1797344_1.fastq.gz 302 152 primary cell none PB-T cell 8 -PB-T cell 8 ERS1505446 SAMEA50498668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 8 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 8 SAMEA50498668 sequencing assay ERX1861023 PBMC-single8_S48_L004_R2_001.fastq.gz PBMC-single8_S48_L004_R2_001.fastq.gz ERR1797344 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797344/ERR1797344_2.fastq.gz 298 150 primary cell none PB-T cell 8 -PB-T cell 9 ERS1505447 SAMEA50499418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 9 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 9 SAMEA50499418 sequencing assay ERX1861024 PBMC-single9_S49_L001_R1_001.fastq.gz PBMC-single9_S49_L001_R1_001.fastq.gz ERR1797345 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797345/ERR1797345_1.fastq.gz 150 76 primary cell none PB-T cell 9 -PB-T cell 9 ERS1505447 SAMEA50499418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 9 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 9 SAMEA50499418 sequencing assay ERX1861024 PBMC-single9_S49_L001_R2_001.fastq.gz PBMC-single9_S49_L001_R2_001.fastq.gz ERR1797345 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797345/ERR1797345_2.fastq.gz 70 36 primary cell none PB-T cell 9 -PB-T cell 9 ERS1505447 SAMEA50499418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 9 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 9 SAMEA50499418 sequencing assay ERX1861024 PBMC-single9_S49_L002_R1_001.fastq.gz PBMC-single9_S49_L002_R1_001.fastq.gz ERR1797346 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797346/ERR1797346_1.fastq.gz 234 118 primary cell none PB-T cell 9 -PB-T cell 9 ERS1505447 SAMEA50499418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 9 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 9 SAMEA50499418 sequencing assay ERX1861024 PBMC-single9_S49_L002_R2_001.fastq.gz PBMC-single9_S49_L002_R2_001.fastq.gz ERR1797346 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797346/ERR1797346_2.fastq.gz 302 152 primary cell none PB-T cell 9 -PB-T cell 9 ERS1505447 SAMEA50499418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 9 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 9 SAMEA50499418 sequencing assay ERX1861024 PBMC-single9_S49_L003_R1_001.fastq.gz PBMC-single9_S49_L003_R1_001.fastq.gz ERR1797347 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797347/ERR1797347_1.fastq.gz 302 152 primary cell none PB-T cell 9 -PB-T cell 9 ERS1505447 SAMEA50499418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 9 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 9 SAMEA50499418 sequencing assay ERX1861024 PBMC-single9_S49_L003_R2_001.fastq.gz PBMC-single9_S49_L003_R2_001.fastq.gz ERR1797347 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797347/ERR1797347_2.fastq.gz 302 152 primary cell none PB-T cell 9 -PB-T cell 9 ERS1505447 SAMEA50499418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 9 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 9 SAMEA50499418 sequencing assay ERX1861024 PBMC-single9_S49_L004_R1_001.fastq.gz PBMC-single9_S49_L004_R1_001.fastq.gz ERR1797348 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797348/ERR1797348_1.fastq.gz 302 152 primary cell none PB-T cell 9 -PB-T cell 9 ERS1505447 SAMEA50499418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 9 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 9 SAMEA50499418 sequencing assay ERX1861024 PBMC-single9_S49_L004_R2_001.fastq.gz PBMC-single9_S49_L004_R2_001.fastq.gz ERR1797348 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797348/ERR1797348_2.fastq.gz 302 152 primary cell none PB-T cell 9 -PB-T cell 19 ERS1505448 SAMEA50500168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 10 cells not OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 19 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 19 SAMEA50500168 sequencing assay ERX1861025 PBMC-ten1_S59_L001_R1_001.fastq.gz PBMC-ten1_S59_L001_R1_001.fastq.gz ERR1797349 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797349/ERR1797349_1.fastq.gz 284 143 primary cell none PB-T cell 19 -PB-T cell 19 ERS1505448 SAMEA50500168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 10 cells not OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 19 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 19 SAMEA50500168 sequencing assay ERX1861025 PBMC-ten1_S59_L001_R2_001.fastq.gz PBMC-ten1_S59_L001_R2_001.fastq.gz ERR1797349 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797349/ERR1797349_2.fastq.gz 70 36 primary cell none PB-T cell 19 -PB-T cell 19 ERS1505448 SAMEA50500168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 10 cells not OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 19 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 19 SAMEA50500168 sequencing assay ERX1861025 PBMC-ten1_S59_L002_R1_001.fastq.gz PBMC-ten1_S59_L002_R1_001.fastq.gz ERR1797350 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797350/ERR1797350_1.fastq.gz 302 152 primary cell none PB-T cell 19 -PB-T cell 19 ERS1505448 SAMEA50500168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 10 cells not OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 19 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 19 SAMEA50500168 sequencing assay ERX1861025 PBMC-ten1_S59_L002_R2_001.fastq.gz PBMC-ten1_S59_L002_R2_001.fastq.gz ERR1797350 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797350/ERR1797350_2.fastq.gz 70 36 primary cell none PB-T cell 19 -PB-T cell 19 ERS1505448 SAMEA50500168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 10 cells not OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 19 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 19 SAMEA50500168 sequencing assay ERX1861025 PBMC-ten1_S59_L003_R1_001.fastq.gz PBMC-ten1_S59_L003_R1_001.fastq.gz ERR1797351 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797351/ERR1797351_1.fastq.gz 302 152 primary cell none PB-T cell 19 -PB-T cell 19 ERS1505448 SAMEA50500168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 10 cells not OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 19 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 19 SAMEA50500168 sequencing assay ERX1861025 PBMC-ten1_S59_L003_R2_001.fastq.gz PBMC-ten1_S59_L003_R2_001.fastq.gz ERR1797351 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797351/ERR1797351_2.fastq.gz 302 152 primary cell none PB-T cell 19 -PB-T cell 19 ERS1505448 SAMEA50500168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 10 cells not OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 19 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 19 SAMEA50500168 sequencing assay ERX1861025 PBMC-ten1_S59_L004_R1_001.fastq.gz PBMC-ten1_S59_L004_R1_001.fastq.gz ERR1797352 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797352/ERR1797352_1.fastq.gz 302 152 primary cell none PB-T cell 19 -PB-T cell 19 ERS1505448 SAMEA50500168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 10 cells not OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 19 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 19 SAMEA50500168 sequencing assay ERX1861025 PBMC-ten1_S59_L004_R2_001.fastq.gz PBMC-ten1_S59_L004_R2_001.fastq.gz ERR1797352 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797352/ERR1797352_2.fastq.gz 302 152 primary cell none PB-T cell 19 -PB-T cell 20 ERS1505449 SAMEA50500918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 10 cells not OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 20 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 20 SAMEA50500918 sequencing assay ERX1861026 PBMC-ten2_S60_L001_R1_001.fastq.gz PBMC-ten2_S60_L001_R1_001.fastq.gz ERR1797353 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797353/ERR1797353_1.fastq.gz 250 126 primary cell none PB-T cell 20 -PB-T cell 20 ERS1505449 SAMEA50500918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 10 cells not OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 20 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 20 SAMEA50500918 sequencing assay ERX1861026 PBMC-ten2_S60_L001_R2_001.fastq.gz PBMC-ten2_S60_L001_R2_001.fastq.gz ERR1797353 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797353/ERR1797353_2.fastq.gz 70 36 primary cell none PB-T cell 20 -PB-T cell 20 ERS1505449 SAMEA50500918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 10 cells not OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 20 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 20 SAMEA50500918 sequencing assay ERX1861026 PBMC-ten2_S60_L002_R1_001.fastq.gz PBMC-ten2_S60_L002_R1_001.fastq.gz ERR1797354 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797354/ERR1797354_1.fastq.gz 234 118 primary cell none PB-T cell 20 -PB-T cell 20 ERS1505449 SAMEA50500918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 10 cells not OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 20 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 20 SAMEA50500918 sequencing assay ERX1861026 PBMC-ten2_S60_L002_R2_001.fastq.gz PBMC-ten2_S60_L002_R2_001.fastq.gz ERR1797354 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797354/ERR1797354_2.fastq.gz 70 36 primary cell none PB-T cell 20 -PB-T cell 20 ERS1505449 SAMEA50500918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 10 cells not OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 20 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 20 SAMEA50500918 sequencing assay ERX1861026 PBMC-ten2_S60_L003_R1_001.fastq.gz PBMC-ten2_S60_L003_R1_001.fastq.gz ERR1797355 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797355/ERR1797355_1.fastq.gz 234 118 primary cell none PB-T cell 20 -PB-T cell 20 ERS1505449 SAMEA50500918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 10 cells not OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 20 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 20 SAMEA50500918 sequencing assay ERX1861026 PBMC-ten2_S60_L003_R2_001.fastq.gz PBMC-ten2_S60_L003_R2_001.fastq.gz ERR1797355 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797355/ERR1797355_2.fastq.gz 234 118 primary cell none PB-T cell 20 -PB-T cell 20 ERS1505449 SAMEA50500918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 10 cells not OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 20 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 20 SAMEA50500918 sequencing assay ERX1861026 PBMC-ten2_S60_L004_R1_001.fastq.gz PBMC-ten2_S60_L004_R1_001.fastq.gz ERR1797356 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797356/ERR1797356_1.fastq.gz 298 150 primary cell none PB-T cell 20 -PB-T cell 20 ERS1505449 SAMEA50500918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 10 cells not OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 20 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 20 SAMEA50500918 sequencing assay ERX1861026 PBMC-ten2_S60_L004_R2_001.fastq.gz PBMC-ten2_S60_L004_R2_001.fastq.gz ERR1797356 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797356/ERR1797356_2.fastq.gz 302 152 primary cell none PB-T cell 20 -CL-Stim 1 ERS1505450 SAMEA50501668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 1 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 1 SAMEA50501668 sequencing assay ERX1861027 Stim-single1_S1_L001_R1_001.fastq.gz Stim-single1_S1_L001_R1_001.fastq.gz ERR1797357 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797357/ERR1797357_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 1 -CL-Stim 1 ERS1505450 SAMEA50501668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 1 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 1 SAMEA50501668 sequencing assay ERX1861027 Stim-single1_S1_L001_R2_001.fastq.gz Stim-single1_S1_L001_R2_001.fastq.gz ERR1797357 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797357/ERR1797357_2.fastq.gz 70 36 immortal cell line cell CINGVCWTV peptide CL-Stim 1 -CL-Stim 1 ERS1505450 SAMEA50501668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 1 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 1 SAMEA50501668 sequencing assay ERX1861027 Stim-single1_S1_L002_R1_001.fastq.gz Stim-single1_S1_L002_R1_001.fastq.gz ERR1797358 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797358/ERR1797358_1.fastq.gz 236 119 immortal cell line cell CINGVCWTV peptide CL-Stim 1 -CL-Stim 1 ERS1505450 SAMEA50501668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 1 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 1 SAMEA50501668 sequencing assay ERX1861027 Stim-single1_S1_L002_R2_001.fastq.gz Stim-single1_S1_L002_R2_001.fastq.gz ERR1797358 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797358/ERR1797358_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 1 -CL-Stim 1 ERS1505450 SAMEA50501668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 1 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 1 SAMEA50501668 sequencing assay ERX1861027 Stim-single1_S1_L003_R1_001.fastq.gz Stim-single1_S1_L003_R1_001.fastq.gz ERR1797359 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797359/ERR1797359_1.fastq.gz 300 151 immortal cell line cell CINGVCWTV peptide CL-Stim 1 -CL-Stim 1 ERS1505450 SAMEA50501668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 1 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 1 SAMEA50501668 sequencing assay ERX1861027 Stim-single1_S1_L003_R2_001.fastq.gz Stim-single1_S1_L003_R2_001.fastq.gz ERR1797359 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797359/ERR1797359_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 1 -CL-Stim 1 ERS1505450 SAMEA50501668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 1 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 1 SAMEA50501668 sequencing assay ERX1861027 Stim-single1_S1_L004_R1_001.fastq.gz Stim-single1_S1_L004_R1_001.fastq.gz ERR1797360 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797360/ERR1797360_1.fastq.gz 300 151 immortal cell line cell CINGVCWTV peptide CL-Stim 1 -CL-Stim 1 ERS1505450 SAMEA50501668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 1 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 1 SAMEA50501668 sequencing assay ERX1861027 Stim-single1_S1_L004_R2_001.fastq.gz Stim-single1_S1_L004_R2_001.fastq.gz ERR1797360 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797360/ERR1797360_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 1 -CL-Stim 10 ERS1505451 SAMEA50502418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 10 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 10 SAMEA50502418 sequencing assay ERX1861028 Stim-single10_S10_L001_R1_001.fastq.gz Stim-single10_S10_L001_R1_001.fastq.gz ERR1797361 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797361/ERR1797361_1.fastq.gz 284 143 immortal cell line cell CINGVCWTV peptide CL-Stim 10 -CL-Stim 10 ERS1505451 SAMEA50502418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 10 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 10 SAMEA50502418 sequencing assay ERX1861028 Stim-single10_S10_L001_R2_001.fastq.gz Stim-single10_S10_L001_R2_001.fastq.gz ERR1797361 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797361/ERR1797361_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 10 -CL-Stim 10 ERS1505451 SAMEA50502418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 10 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 10 SAMEA50502418 sequencing assay ERX1861028 Stim-single10_S10_L002_R1_001.fastq.gz Stim-single10_S10_L002_R1_001.fastq.gz ERR1797362 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797362/ERR1797362_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 10 -CL-Stim 10 ERS1505451 SAMEA50502418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 10 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 10 SAMEA50502418 sequencing assay ERX1861028 Stim-single10_S10_L002_R2_001.fastq.gz Stim-single10_S10_L002_R2_001.fastq.gz ERR1797362 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797362/ERR1797362_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 10 -CL-Stim 10 ERS1505451 SAMEA50502418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 10 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 10 SAMEA50502418 sequencing assay ERX1861028 Stim-single10_S10_L003_R1_001.fastq.gz Stim-single10_S10_L003_R1_001.fastq.gz ERR1797363 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797363/ERR1797363_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 10 -CL-Stim 10 ERS1505451 SAMEA50502418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 10 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 10 SAMEA50502418 sequencing assay ERX1861028 Stim-single10_S10_L003_R2_001.fastq.gz Stim-single10_S10_L003_R2_001.fastq.gz ERR1797363 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797363/ERR1797363_2.fastq.gz 300 151 immortal cell line cell CINGVCWTV peptide CL-Stim 10 -CL-Stim 10 ERS1505451 SAMEA50502418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 10 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 10 SAMEA50502418 sequencing assay ERX1861028 Stim-single10_S10_L004_R1_001.fastq.gz Stim-single10_S10_L004_R1_001.fastq.gz ERR1797364 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797364/ERR1797364_1.fastq.gz 300 151 immortal cell line cell CINGVCWTV peptide CL-Stim 10 -CL-Stim 10 ERS1505451 SAMEA50502418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 10 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 10 SAMEA50502418 sequencing assay ERX1861028 Stim-single10_S10_L004_R2_001.fastq.gz Stim-single10_S10_L004_R2_001.fastq.gz ERR1797364 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797364/ERR1797364_2.fastq.gz 298 150 immortal cell line cell CINGVCWTV peptide CL-Stim 10 -CL-Stim 11 ERS1505452 SAMEA50503168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 11 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 11 SAMEA50503168 sequencing assay ERX1861029 Stim-single11_S11_L001_R1_001.fastq.gz Stim-single11_S11_L001_R1_001.fastq.gz ERR1797365 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797365/ERR1797365_1.fastq.gz 250 126 immortal cell line cell CINGVCWTV peptide CL-Stim 11 -CL-Stim 11 ERS1505452 SAMEA50503168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 11 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 11 SAMEA50503168 sequencing assay ERX1861029 Stim-single11_S11_L001_R2_001.fastq.gz Stim-single11_S11_L001_R2_001.fastq.gz ERR1797365 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797365/ERR1797365_2.fastq.gz 70 36 immortal cell line cell CINGVCWTV peptide CL-Stim 11 -CL-Stim 11 ERS1505452 SAMEA50503168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 11 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 11 SAMEA50503168 sequencing assay ERX1861029 Stim-single11_S11_L002_R1_001.fastq.gz Stim-single11_S11_L002_R1_001.fastq.gz ERR1797366 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797366/ERR1797366_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 11 -CL-Stim 11 ERS1505452 SAMEA50503168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 11 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 11 SAMEA50503168 sequencing assay ERX1861029 Stim-single11_S11_L002_R2_001.fastq.gz Stim-single11_S11_L002_R2_001.fastq.gz ERR1797366 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797366/ERR1797366_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 11 -CL-Stim 11 ERS1505452 SAMEA50503168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 11 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 11 SAMEA50503168 sequencing assay ERX1861029 Stim-single11_S11_L003_R1_001.fastq.gz Stim-single11_S11_L003_R1_001.fastq.gz ERR1797367 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797367/ERR1797367_1.fastq.gz 298 150 immortal cell line cell CINGVCWTV peptide CL-Stim 11 -CL-Stim 11 ERS1505452 SAMEA50503168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 11 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 11 SAMEA50503168 sequencing assay ERX1861029 Stim-single11_S11_L003_R2_001.fastq.gz Stim-single11_S11_L003_R2_001.fastq.gz ERR1797367 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797367/ERR1797367_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 11 -CL-Stim 11 ERS1505452 SAMEA50503168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 11 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 11 SAMEA50503168 sequencing assay ERX1861029 Stim-single11_S11_L004_R1_001.fastq.gz Stim-single11_S11_L004_R1_001.fastq.gz ERR1797368 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797368/ERR1797368_1.fastq.gz 298 150 immortal cell line cell CINGVCWTV peptide CL-Stim 11 -CL-Stim 11 ERS1505452 SAMEA50503168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 11 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 11 SAMEA50503168 sequencing assay ERX1861029 Stim-single11_S11_L004_R2_001.fastq.gz Stim-single11_S11_L004_R2_001.fastq.gz ERR1797368 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797368/ERR1797368_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 11 -CL-Stim 12 ERS1505453 SAMEA50503918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 12 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 12 SAMEA50503918 sequencing assay ERX1861030 Stim-single12_S12_L001_R1_001.fastq.gz Stim-single12_S12_L001_R1_001.fastq.gz ERR1797369 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797369/ERR1797369_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 12 -CL-Stim 12 ERS1505453 SAMEA50503918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 12 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 12 SAMEA50503918 sequencing assay ERX1861030 Stim-single12_S12_L001_R2_001.fastq.gz Stim-single12_S12_L001_R2_001.fastq.gz ERR1797369 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797369/ERR1797369_2.fastq.gz 70 36 immortal cell line cell CINGVCWTV peptide CL-Stim 12 -CL-Stim 12 ERS1505453 SAMEA50503918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 12 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 12 SAMEA50503918 sequencing assay ERX1861030 Stim-single12_S12_L002_R1_001.fastq.gz Stim-single12_S12_L002_R1_001.fastq.gz ERR1797370 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797370/ERR1797370_1.fastq.gz 228 115 immortal cell line cell CINGVCWTV peptide CL-Stim 12 -CL-Stim 12 ERS1505453 SAMEA50503918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 12 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 12 SAMEA50503918 sequencing assay ERX1861030 Stim-single12_S12_L002_R2_001.fastq.gz Stim-single12_S12_L002_R2_001.fastq.gz ERR1797370 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797370/ERR1797370_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 12 -CL-Stim 12 ERS1505453 SAMEA50503918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 12 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 12 SAMEA50503918 sequencing assay ERX1861030 Stim-single12_S12_L003_R1_001.fastq.gz Stim-single12_S12_L003_R1_001.fastq.gz ERR1797371 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797371/ERR1797371_1.fastq.gz 116 59 immortal cell line cell CINGVCWTV peptide CL-Stim 12 -CL-Stim 12 ERS1505453 SAMEA50503918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 12 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 12 SAMEA50503918 sequencing assay ERX1861030 Stim-single12_S12_L003_R2_001.fastq.gz Stim-single12_S12_L003_R2_001.fastq.gz ERR1797371 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797371/ERR1797371_2.fastq.gz 116 59 immortal cell line cell CINGVCWTV peptide CL-Stim 12 -CL-Stim 12 ERS1505453 SAMEA50503918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 12 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 12 SAMEA50503918 sequencing assay ERX1861030 Stim-single12_S12_L004_R1_001.fastq.gz Stim-single12_S12_L004_R1_001.fastq.gz ERR1797372 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797372/ERR1797372_1.fastq.gz 300 151 immortal cell line cell CINGVCWTV peptide CL-Stim 12 -CL-Stim 12 ERS1505453 SAMEA50503918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 12 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 12 SAMEA50503918 sequencing assay ERX1861030 Stim-single12_S12_L004_R2_001.fastq.gz Stim-single12_S12_L004_R2_001.fastq.gz ERR1797372 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797372/ERR1797372_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 12 -CL-Stim 13 ERS1505454 SAMEA50504668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 13 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 13 SAMEA50504668 sequencing assay ERX1861031 Stim-single13_S13_L001_R1_001.fastq.gz Stim-single13_S13_L001_R1_001.fastq.gz ERR1797373 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797373/ERR1797373_1.fastq.gz 280 141 immortal cell line cell CINGVCWTV peptide CL-Stim 13 -CL-Stim 13 ERS1505454 SAMEA50504668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 13 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 13 SAMEA50504668 sequencing assay ERX1861031 Stim-single13_S13_L001_R2_001.fastq.gz Stim-single13_S13_L001_R2_001.fastq.gz ERR1797373 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797373/ERR1797373_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 13 -CL-Stim 13 ERS1505454 SAMEA50504668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 13 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 13 SAMEA50504668 sequencing assay ERX1861031 Stim-single13_S13_L002_R1_001.fastq.gz Stim-single13_S13_L002_R1_001.fastq.gz ERR1797374 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797374/ERR1797374_1.fastq.gz 224 113 immortal cell line cell CINGVCWTV peptide CL-Stim 13 -CL-Stim 13 ERS1505454 SAMEA50504668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 13 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 13 SAMEA50504668 sequencing assay ERX1861031 Stim-single13_S13_L002_R2_001.fastq.gz Stim-single13_S13_L002_R2_001.fastq.gz ERR1797374 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797374/ERR1797374_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 13 -CL-Stim 13 ERS1505454 SAMEA50504668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 13 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 13 SAMEA50504668 sequencing assay ERX1861031 Stim-single13_S13_L003_R1_001.fastq.gz Stim-single13_S13_L003_R1_001.fastq.gz ERR1797375 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797375/ERR1797375_1.fastq.gz 300 151 immortal cell line cell CINGVCWTV peptide CL-Stim 13 -CL-Stim 13 ERS1505454 SAMEA50504668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 13 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 13 SAMEA50504668 sequencing assay ERX1861031 Stim-single13_S13_L003_R2_001.fastq.gz Stim-single13_S13_L003_R2_001.fastq.gz ERR1797375 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797375/ERR1797375_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 13 -CL-Stim 13 ERS1505454 SAMEA50504668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 13 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 13 SAMEA50504668 sequencing assay ERX1861031 Stim-single13_S13_L004_R1_001.fastq.gz Stim-single13_S13_L004_R1_001.fastq.gz ERR1797376 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797376/ERR1797376_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 13 -CL-Stim 13 ERS1505454 SAMEA50504668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 13 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 13 SAMEA50504668 sequencing assay ERX1861031 Stim-single13_S13_L004_R2_001.fastq.gz Stim-single13_S13_L004_R2_001.fastq.gz ERR1797376 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797376/ERR1797376_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 13 -CL-Stim 14 ERS1505455 SAMEA50505418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 14 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 14 SAMEA50505418 sequencing assay ERX1861032 Stim-single14_S14_L001_R1_001.fastq.gz Stim-single14_S14_L001_R1_001.fastq.gz ERR1797377 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797377/ERR1797377_1.fastq.gz 254 128 immortal cell line cell CINGVCWTV peptide CL-Stim 14 -CL-Stim 14 ERS1505455 SAMEA50505418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 14 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 14 SAMEA50505418 sequencing assay ERX1861032 Stim-single14_S14_L001_R2_001.fastq.gz Stim-single14_S14_L001_R2_001.fastq.gz ERR1797377 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797377/ERR1797377_2.fastq.gz 70 36 immortal cell line cell CINGVCWTV peptide CL-Stim 14 -CL-Stim 14 ERS1505455 SAMEA50505418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 14 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 14 SAMEA50505418 sequencing assay ERX1861032 Stim-single14_S14_L002_R1_001.fastq.gz Stim-single14_S14_L002_R1_001.fastq.gz ERR1797378 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797378/ERR1797378_1.fastq.gz 232 117 immortal cell line cell CINGVCWTV peptide CL-Stim 14 -CL-Stim 14 ERS1505455 SAMEA50505418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 14 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 14 SAMEA50505418 sequencing assay ERX1861032 Stim-single14_S14_L002_R2_001.fastq.gz Stim-single14_S14_L002_R2_001.fastq.gz ERR1797378 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797378/ERR1797378_2.fastq.gz 70 36 immortal cell line cell CINGVCWTV peptide CL-Stim 14 -CL-Stim 14 ERS1505455 SAMEA50505418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 14 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 14 SAMEA50505418 sequencing assay ERX1861032 Stim-single14_S14_L003_R1_001.fastq.gz Stim-single14_S14_L003_R1_001.fastq.gz ERR1797379 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797379/ERR1797379_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 14 -CL-Stim 14 ERS1505455 SAMEA50505418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 14 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 14 SAMEA50505418 sequencing assay ERX1861032 Stim-single14_S14_L003_R2_001.fastq.gz Stim-single14_S14_L003_R2_001.fastq.gz ERR1797379 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797379/ERR1797379_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 14 -CL-Stim 14 ERS1505455 SAMEA50505418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 14 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 14 SAMEA50505418 sequencing assay ERX1861032 Stim-single14_S14_L004_R1_001.fastq.gz Stim-single14_S14_L004_R1_001.fastq.gz ERR1797380 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797380/ERR1797380_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 14 -CL-Stim 14 ERS1505455 SAMEA50505418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 14 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 14 SAMEA50505418 sequencing assay ERX1861032 Stim-single14_S14_L004_R2_001.fastq.gz Stim-single14_S14_L004_R2_001.fastq.gz ERR1797380 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797380/ERR1797380_2.fastq.gz 300 151 immortal cell line cell CINGVCWTV peptide CL-Stim 14 -CL-Stim 15 ERS1505456 SAMEA50506168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 15 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 15 SAMEA50506168 sequencing assay ERX1861033 Stim-single15_S15_L001_R1_001.fastq.gz Stim-single15_S15_L001_R1_001.fastq.gz ERR1797381 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797381/ERR1797381_1.fastq.gz 254 128 immortal cell line cell CINGVCWTV peptide CL-Stim 15 -CL-Stim 15 ERS1505456 SAMEA50506168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 15 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 15 SAMEA50506168 sequencing assay ERX1861033 Stim-single15_S15_L001_R2_001.fastq.gz Stim-single15_S15_L001_R2_001.fastq.gz ERR1797381 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797381/ERR1797381_2.fastq.gz 70 36 immortal cell line cell CINGVCWTV peptide CL-Stim 15 -CL-Stim 15 ERS1505456 SAMEA50506168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 15 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 15 SAMEA50506168 sequencing assay ERX1861033 Stim-single15_S15_L002_R1_001.fastq.gz Stim-single15_S15_L002_R1_001.fastq.gz ERR1797382 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797382/ERR1797382_1.fastq.gz 250 126 immortal cell line cell CINGVCWTV peptide CL-Stim 15 -CL-Stim 15 ERS1505456 SAMEA50506168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 15 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 15 SAMEA50506168 sequencing assay ERX1861033 Stim-single15_S15_L002_R2_001.fastq.gz Stim-single15_S15_L002_R2_001.fastq.gz ERR1797382 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797382/ERR1797382_2.fastq.gz 70 36 immortal cell line cell CINGVCWTV peptide CL-Stim 15 -CL-Stim 15 ERS1505456 SAMEA50506168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 15 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 15 SAMEA50506168 sequencing assay ERX1861033 Stim-single15_S15_L003_R1_001.fastq.gz Stim-single15_S15_L003_R1_001.fastq.gz ERR1797383 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797383/ERR1797383_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 15 -CL-Stim 15 ERS1505456 SAMEA50506168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 15 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 15 SAMEA50506168 sequencing assay ERX1861033 Stim-single15_S15_L003_R2_001.fastq.gz Stim-single15_S15_L003_R2_001.fastq.gz ERR1797383 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797383/ERR1797383_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 15 -CL-Stim 15 ERS1505456 SAMEA50506168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 15 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 15 SAMEA50506168 sequencing assay ERX1861033 Stim-single15_S15_L004_R1_001.fastq.gz Stim-single15_S15_L004_R1_001.fastq.gz ERR1797384 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797384/ERR1797384_1.fastq.gz 300 151 immortal cell line cell CINGVCWTV peptide CL-Stim 15 -CL-Stim 15 ERS1505456 SAMEA50506168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 15 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 15 SAMEA50506168 sequencing assay ERX1861033 Stim-single15_S15_L004_R2_001.fastq.gz Stim-single15_S15_L004_R2_001.fastq.gz ERR1797384 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797384/ERR1797384_2.fastq.gz 300 151 immortal cell line cell CINGVCWTV peptide CL-Stim 15 -CL-Stim 16 ERS1505457 SAMEA50506918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 16 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 16 SAMEA50506918 sequencing assay ERX1861034 Stim-single16_S16_L001_R1_001.fastq.gz Stim-single16_S16_L001_R1_001.fastq.gz ERR1797385 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797385/ERR1797385_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 16 -CL-Stim 16 ERS1505457 SAMEA50506918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 16 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 16 SAMEA50506918 sequencing assay ERX1861034 Stim-single16_S16_L001_R2_001.fastq.gz Stim-single16_S16_L001_R2_001.fastq.gz ERR1797385 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797385/ERR1797385_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 16 -CL-Stim 16 ERS1505457 SAMEA50506918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 16 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 16 SAMEA50506918 sequencing assay ERX1861034 Stim-single16_S16_L002_R1_001.fastq.gz Stim-single16_S16_L002_R1_001.fastq.gz ERR1797386 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797386/ERR1797386_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 16 -CL-Stim 16 ERS1505457 SAMEA50506918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 16 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 16 SAMEA50506918 sequencing assay ERX1861034 Stim-single16_S16_L002_R2_001.fastq.gz Stim-single16_S16_L002_R2_001.fastq.gz ERR1797386 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797386/ERR1797386_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 16 -CL-Stim 16 ERS1505457 SAMEA50506918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 16 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 16 SAMEA50506918 sequencing assay ERX1861034 Stim-single16_S16_L003_R1_001.fastq.gz Stim-single16_S16_L003_R1_001.fastq.gz ERR1797387 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797387/ERR1797387_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 16 -CL-Stim 16 ERS1505457 SAMEA50506918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 16 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 16 SAMEA50506918 sequencing assay ERX1861034 Stim-single16_S16_L003_R2_001.fastq.gz Stim-single16_S16_L003_R2_001.fastq.gz ERR1797387 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797387/ERR1797387_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 16 -CL-Stim 16 ERS1505457 SAMEA50506918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 16 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 16 SAMEA50506918 sequencing assay ERX1861034 Stim-single16_S16_L004_R1_001.fastq.gz Stim-single16_S16_L004_R1_001.fastq.gz ERR1797388 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797388/ERR1797388_1.fastq.gz 272 137 immortal cell line cell CINGVCWTV peptide CL-Stim 16 -CL-Stim 16 ERS1505457 SAMEA50506918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 16 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 16 SAMEA50506918 sequencing assay ERX1861034 Stim-single16_S16_L004_R2_001.fastq.gz Stim-single16_S16_L004_R2_001.fastq.gz ERR1797388 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797388/ERR1797388_2.fastq.gz 272 137 immortal cell line cell CINGVCWTV peptide CL-Stim 16 -CL-Stim 17 ERS1505458 SAMEA50507668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 17 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 17 SAMEA50507668 sequencing assay ERX1861035 Stim-single17_S17_L001_R1_001.fastq.gz Stim-single17_S17_L001_R1_001.fastq.gz ERR1797389 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797389/ERR1797389_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 17 -CL-Stim 17 ERS1505458 SAMEA50507668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 17 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 17 SAMEA50507668 sequencing assay ERX1861035 Stim-single17_S17_L001_R2_001.fastq.gz Stim-single17_S17_L001_R2_001.fastq.gz ERR1797389 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797389/ERR1797389_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 17 -CL-Stim 17 ERS1505458 SAMEA50507668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 17 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 17 SAMEA50507668 sequencing assay ERX1861035 Stim-single17_S17_L002_R1_001.fastq.gz Stim-single17_S17_L002_R1_001.fastq.gz ERR1797390 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797390/ERR1797390_1.fastq.gz 254 128 immortal cell line cell CINGVCWTV peptide CL-Stim 17 -CL-Stim 17 ERS1505458 SAMEA50507668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 17 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 17 SAMEA50507668 sequencing assay ERX1861035 Stim-single17_S17_L002_R2_001.fastq.gz Stim-single17_S17_L002_R2_001.fastq.gz ERR1797390 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797390/ERR1797390_2.fastq.gz 70 36 immortal cell line cell CINGVCWTV peptide CL-Stim 17 -CL-Stim 17 ERS1505458 SAMEA50507668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 17 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 17 SAMEA50507668 sequencing assay ERX1861035 Stim-single17_S17_L003_R1_001.fastq.gz Stim-single17_S17_L003_R1_001.fastq.gz ERR1797391 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797391/ERR1797391_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 17 -CL-Stim 17 ERS1505458 SAMEA50507668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 17 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 17 SAMEA50507668 sequencing assay ERX1861035 Stim-single17_S17_L003_R2_001.fastq.gz Stim-single17_S17_L003_R2_001.fastq.gz ERR1797391 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797391/ERR1797391_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 17 -CL-Stim 17 ERS1505458 SAMEA50507668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 17 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 17 SAMEA50507668 sequencing assay ERX1861035 Stim-single17_S17_L004_R1_001.fastq.gz Stim-single17_S17_L004_R1_001.fastq.gz ERR1797392 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797392/ERR1797392_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 17 -CL-Stim 17 ERS1505458 SAMEA50507668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 17 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 17 SAMEA50507668 sequencing assay ERX1861035 Stim-single17_S17_L004_R2_001.fastq.gz Stim-single17_S17_L004_R2_001.fastq.gz ERR1797392 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797392/ERR1797392_2.fastq.gz 298 150 immortal cell line cell CINGVCWTV peptide CL-Stim 17 -CL-Stim 18 ERS1505459 SAMEA50508418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 18 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 18 SAMEA50508418 sequencing assay ERX1861036 Stim-single18_S18_L001_R1_001.fastq.gz Stim-single18_S18_L001_R1_001.fastq.gz ERR1797393 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797393/ERR1797393_1.fastq.gz 278 140 immortal cell line cell CINGVCWTV peptide CL-Stim 18 -CL-Stim 18 ERS1505459 SAMEA50508418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 18 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 18 SAMEA50508418 sequencing assay ERX1861036 Stim-single18_S18_L001_R2_001.fastq.gz Stim-single18_S18_L001_R2_001.fastq.gz ERR1797393 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797393/ERR1797393_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 18 -CL-Stim 18 ERS1505459 SAMEA50508418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 18 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 18 SAMEA50508418 sequencing assay ERX1861036 Stim-single18_S18_L002_R1_001.fastq.gz Stim-single18_S18_L002_R1_001.fastq.gz ERR1797394 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797394/ERR1797394_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 18 -CL-Stim 18 ERS1505459 SAMEA50508418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 18 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 18 SAMEA50508418 sequencing assay ERX1861036 Stim-single18_S18_L002_R2_001.fastq.gz Stim-single18_S18_L002_R2_001.fastq.gz ERR1797394 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797394/ERR1797394_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 18 -CL-Stim 18 ERS1505459 SAMEA50508418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 18 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 18 SAMEA50508418 sequencing assay ERX1861036 Stim-single18_S18_L003_R1_001.fastq.gz Stim-single18_S18_L003_R1_001.fastq.gz ERR1797395 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797395/ERR1797395_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 18 -CL-Stim 18 ERS1505459 SAMEA50508418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 18 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 18 SAMEA50508418 sequencing assay ERX1861036 Stim-single18_S18_L003_R2_001.fastq.gz Stim-single18_S18_L003_R2_001.fastq.gz ERR1797395 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797395/ERR1797395_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 18 -CL-Stim 18 ERS1505459 SAMEA50508418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 18 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 18 SAMEA50508418 sequencing assay ERX1861036 Stim-single18_S18_L004_R1_001.fastq.gz Stim-single18_S18_L004_R1_001.fastq.gz ERR1797396 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797396/ERR1797396_1.fastq.gz 156 79 immortal cell line cell CINGVCWTV peptide CL-Stim 18 -CL-Stim 18 ERS1505459 SAMEA50508418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 18 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 18 SAMEA50508418 sequencing assay ERX1861036 Stim-single18_S18_L004_R2_001.fastq.gz Stim-single18_S18_L004_R2_001.fastq.gz ERR1797396 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797396/ERR1797396_2.fastq.gz 156 79 immortal cell line cell CINGVCWTV peptide CL-Stim 18 -CL-Stim 2 ERS1505460 SAMEA50509168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 2 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 2 SAMEA50509168 sequencing assay ERX1861037 Stim-single2_S2_L001_R1_001.fastq.gz Stim-single2_S2_L001_R1_001.fastq.gz ERR1797397 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797397/ERR1797397_1.fastq.gz 252 127 immortal cell line cell CINGVCWTV peptide CL-Stim 2 -CL-Stim 2 ERS1505460 SAMEA50509168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 2 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 2 SAMEA50509168 sequencing assay ERX1861037 Stim-single2_S2_L001_R2_001.fastq.gz Stim-single2_S2_L001_R2_001.fastq.gz ERR1797397 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797397/ERR1797397_2.fastq.gz 70 36 immortal cell line cell CINGVCWTV peptide CL-Stim 2 -CL-Stim 2 ERS1505460 SAMEA50509168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 2 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 2 SAMEA50509168 sequencing assay ERX1861037 Stim-single2_S2_L002_R1_001.fastq.gz Stim-single2_S2_L002_R1_001.fastq.gz ERR1797398 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797398/ERR1797398_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 2 -CL-Stim 2 ERS1505460 SAMEA50509168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 2 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 2 SAMEA50509168 sequencing assay ERX1861037 Stim-single2_S2_L002_R2_001.fastq.gz Stim-single2_S2_L002_R2_001.fastq.gz ERR1797398 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797398/ERR1797398_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 2 -CL-Stim 2 ERS1505460 SAMEA50509168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 2 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 2 SAMEA50509168 sequencing assay ERX1861037 Stim-single2_S2_L003_R1_001.fastq.gz Stim-single2_S2_L003_R1_001.fastq.gz ERR1797399 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797399/ERR1797399_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 2 -CL-Stim 2 ERS1505460 SAMEA50509168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 2 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 2 SAMEA50509168 sequencing assay ERX1861037 Stim-single2_S2_L003_R2_001.fastq.gz Stim-single2_S2_L003_R2_001.fastq.gz ERR1797399 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797399/ERR1797399_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 2 -CL-Stim 2 ERS1505460 SAMEA50509168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 2 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 2 SAMEA50509168 sequencing assay ERX1861037 Stim-single2_S2_L004_R1_001.fastq.gz Stim-single2_S2_L004_R1_001.fastq.gz ERR1797400 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797400/ERR1797400_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 2 -CL-Stim 2 ERS1505460 SAMEA50509168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 2 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 2 SAMEA50509168 sequencing assay ERX1861037 Stim-single2_S2_L004_R2_001.fastq.gz Stim-single2_S2_L004_R2_001.fastq.gz ERR1797400 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797400/ERR1797400_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 2 -CL-Stim 3 ERS1505461 SAMEA50509918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 3 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 3 SAMEA50509918 sequencing assay ERX1861038 Stim-single3_S3_L001_R1_001.fastq.gz Stim-single3_S3_L001_R1_001.fastq.gz ERR1797401 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797401/ERR1797401_1.fastq.gz 254 128 immortal cell line cell CINGVCWTV peptide CL-Stim 3 -CL-Stim 3 ERS1505461 SAMEA50509918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 3 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 3 SAMEA50509918 sequencing assay ERX1861038 Stim-single3_S3_L001_R2_001.fastq.gz Stim-single3_S3_L001_R2_001.fastq.gz ERR1797401 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797401/ERR1797401_2.fastq.gz 70 36 immortal cell line cell CINGVCWTV peptide CL-Stim 3 -CL-Stim 3 ERS1505461 SAMEA50509918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 3 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 3 SAMEA50509918 sequencing assay ERX1861038 Stim-single3_S3_L002_R1_001.fastq.gz Stim-single3_S3_L002_R1_001.fastq.gz ERR1797402 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797402/ERR1797402_1.fastq.gz 262 132 immortal cell line cell CINGVCWTV peptide CL-Stim 3 -CL-Stim 3 ERS1505461 SAMEA50509918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 3 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 3 SAMEA50509918 sequencing assay ERX1861038 Stim-single3_S3_L002_R2_001.fastq.gz Stim-single3_S3_L002_R2_001.fastq.gz ERR1797402 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797402/ERR1797402_2.fastq.gz 70 36 immortal cell line cell CINGVCWTV peptide CL-Stim 3 -CL-Stim 3 ERS1505461 SAMEA50509918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 3 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 3 SAMEA50509918 sequencing assay ERX1861038 Stim-single3_S3_L003_R1_001.fastq.gz Stim-single3_S3_L003_R1_001.fastq.gz ERR1797403 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797403/ERR1797403_1.fastq.gz 196 99 immortal cell line cell CINGVCWTV peptide CL-Stim 3 -CL-Stim 3 ERS1505461 SAMEA50509918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 3 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 3 SAMEA50509918 sequencing assay ERX1861038 Stim-single3_S3_L003_R2_001.fastq.gz Stim-single3_S3_L003_R2_001.fastq.gz ERR1797403 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797403/ERR1797403_2.fastq.gz 196 99 immortal cell line cell CINGVCWTV peptide CL-Stim 3 -CL-Stim 3 ERS1505461 SAMEA50509918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 3 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 3 SAMEA50509918 sequencing assay ERX1861038 Stim-single3_S3_L004_R1_001.fastq.gz Stim-single3_S3_L004_R1_001.fastq.gz ERR1797404 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797404/ERR1797404_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 3 -CL-Stim 3 ERS1505461 SAMEA50509918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 3 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 3 SAMEA50509918 sequencing assay ERX1861038 Stim-single3_S3_L004_R2_001.fastq.gz Stim-single3_S3_L004_R2_001.fastq.gz ERR1797404 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797404/ERR1797404_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 3 -CL-Stim 4 ERS1505462 SAMEA50510668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 4 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 4 SAMEA50510668 sequencing assay ERX1861039 Stim-single4_S4_L001_R1_001.fastq.gz Stim-single4_S4_L001_R1_001.fastq.gz ERR1797405 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797405/ERR1797405_1.fastq.gz 256 129 immortal cell line cell CINGVCWTV peptide CL-Stim 4 -CL-Stim 4 ERS1505462 SAMEA50510668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 4 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 4 SAMEA50510668 sequencing assay ERX1861039 Stim-single4_S4_L001_R2_001.fastq.gz Stim-single4_S4_L001_R2_001.fastq.gz ERR1797405 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797405/ERR1797405_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 4 -CL-Stim 4 ERS1505462 SAMEA50510668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 4 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 4 SAMEA50510668 sequencing assay ERX1861039 Stim-single4_S4_L002_R1_001.fastq.gz Stim-single4_S4_L002_R1_001.fastq.gz ERR1797406 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797406/ERR1797406_1.fastq.gz 224 113 immortal cell line cell CINGVCWTV peptide CL-Stim 4 -CL-Stim 4 ERS1505462 SAMEA50510668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 4 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 4 SAMEA50510668 sequencing assay ERX1861039 Stim-single4_S4_L002_R2_001.fastq.gz Stim-single4_S4_L002_R2_001.fastq.gz ERR1797406 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797406/ERR1797406_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 4 -CL-Stim 4 ERS1505462 SAMEA50510668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 4 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 4 SAMEA50510668 sequencing assay ERX1861039 Stim-single4_S4_L003_R1_001.fastq.gz Stim-single4_S4_L003_R1_001.fastq.gz ERR1797407 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797407/ERR1797407_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 4 -CL-Stim 4 ERS1505462 SAMEA50510668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 4 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 4 SAMEA50510668 sequencing assay ERX1861039 Stim-single4_S4_L003_R2_001.fastq.gz Stim-single4_S4_L003_R2_001.fastq.gz ERR1797407 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797407/ERR1797407_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 4 -CL-Stim 4 ERS1505462 SAMEA50510668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 4 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 4 SAMEA50510668 sequencing assay ERX1861039 Stim-single4_S4_L004_R1_001.fastq.gz Stim-single4_S4_L004_R1_001.fastq.gz ERR1797408 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797408/ERR1797408_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 4 -CL-Stim 4 ERS1505462 SAMEA50510668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 4 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 4 SAMEA50510668 sequencing assay ERX1861039 Stim-single4_S4_L004_R2_001.fastq.gz Stim-single4_S4_L004_R2_001.fastq.gz ERR1797408 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797408/ERR1797408_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 4 -CL-Stim 5 ERS1505463 SAMEA50511418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 5 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 5 SAMEA50511418 sequencing assay ERX1861040 Stim-single5_S5_L001_R1_001.fastq.gz Stim-single5_S5_L001_R1_001.fastq.gz ERR1797409 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797409/ERR1797409_1.fastq.gz 250 126 immortal cell line cell CINGVCWTV peptide CL-Stim 5 -CL-Stim 5 ERS1505463 SAMEA50511418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 5 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 5 SAMEA50511418 sequencing assay ERX1861040 Stim-single5_S5_L001_R2_001.fastq.gz Stim-single5_S5_L001_R2_001.fastq.gz ERR1797409 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797409/ERR1797409_2.fastq.gz 70 36 immortal cell line cell CINGVCWTV peptide CL-Stim 5 -CL-Stim 5 ERS1505463 SAMEA50511418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 5 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 5 SAMEA50511418 sequencing assay ERX1861040 Stim-single5_S5_L002_R1_001.fastq.gz Stim-single5_S5_L002_R1_001.fastq.gz ERR1797410 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797410/ERR1797410_1.fastq.gz 226 114 immortal cell line cell CINGVCWTV peptide CL-Stim 5 -CL-Stim 5 ERS1505463 SAMEA50511418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 5 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 5 SAMEA50511418 sequencing assay ERX1861040 Stim-single5_S5_L002_R2_001.fastq.gz Stim-single5_S5_L002_R2_001.fastq.gz ERR1797410 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797410/ERR1797410_2.fastq.gz 70 36 immortal cell line cell CINGVCWTV peptide CL-Stim 5 -CL-Stim 5 ERS1505463 SAMEA50511418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 5 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 5 SAMEA50511418 sequencing assay ERX1861040 Stim-single5_S5_L003_R1_001.fastq.gz Stim-single5_S5_L003_R1_001.fastq.gz ERR1797411 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797411/ERR1797411_1.fastq.gz 300 151 immortal cell line cell CINGVCWTV peptide CL-Stim 5 -CL-Stim 5 ERS1505463 SAMEA50511418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 5 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 5 SAMEA50511418 sequencing assay ERX1861040 Stim-single5_S5_L003_R2_001.fastq.gz Stim-single5_S5_L003_R2_001.fastq.gz ERR1797411 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797411/ERR1797411_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 5 -CL-Stim 5 ERS1505463 SAMEA50511418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 5 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 5 SAMEA50511418 sequencing assay ERX1861040 Stim-single5_S5_L004_R1_001.fastq.gz Stim-single5_S5_L004_R1_001.fastq.gz ERR1797412 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797412/ERR1797412_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 5 -CL-Stim 5 ERS1505463 SAMEA50511418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 5 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 5 SAMEA50511418 sequencing assay ERX1861040 Stim-single5_S5_L004_R2_001.fastq.gz Stim-single5_S5_L004_R2_001.fastq.gz ERR1797412 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797412/ERR1797412_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 5 -CL-Stim 6 ERS1505464 SAMEA50512168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 6 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 6 SAMEA50512168 sequencing assay ERX1861041 Stim-single6_S6_L001_R1_001.fastq.gz Stim-single6_S6_L001_R1_001.fastq.gz ERR1797413 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797413/ERR1797413_1.fastq.gz 252 127 immortal cell line cell CINGVCWTV peptide CL-Stim 6 -CL-Stim 6 ERS1505464 SAMEA50512168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 6 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 6 SAMEA50512168 sequencing assay ERX1861041 Stim-single6_S6_L001_R2_001.fastq.gz Stim-single6_S6_L001_R2_001.fastq.gz ERR1797413 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797413/ERR1797413_2.fastq.gz 70 36 immortal cell line cell CINGVCWTV peptide CL-Stim 6 -CL-Stim 6 ERS1505464 SAMEA50512168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 6 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 6 SAMEA50512168 sequencing assay ERX1861041 Stim-single6_S6_L002_R1_001.fastq.gz Stim-single6_S6_L002_R1_001.fastq.gz ERR1797414 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797414/ERR1797414_1.fastq.gz 212 107 immortal cell line cell CINGVCWTV peptide CL-Stim 6 -CL-Stim 6 ERS1505464 SAMEA50512168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 6 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 6 SAMEA50512168 sequencing assay ERX1861041 Stim-single6_S6_L002_R2_001.fastq.gz Stim-single6_S6_L002_R2_001.fastq.gz ERR1797414 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797414/ERR1797414_2.fastq.gz 70 36 immortal cell line cell CINGVCWTV peptide CL-Stim 6 -CL-Stim 6 ERS1505464 SAMEA50512168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 6 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 6 SAMEA50512168 sequencing assay ERX1861041 Stim-single6_S6_L003_R1_001.fastq.gz Stim-single6_S6_L003_R1_001.fastq.gz ERR1797415 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797415/ERR1797415_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 6 -CL-Stim 6 ERS1505464 SAMEA50512168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 6 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 6 SAMEA50512168 sequencing assay ERX1861041 Stim-single6_S6_L003_R2_001.fastq.gz Stim-single6_S6_L003_R2_001.fastq.gz ERR1797415 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797415/ERR1797415_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 6 -CL-Stim 6 ERS1505464 SAMEA50512168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 6 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 6 SAMEA50512168 sequencing assay ERX1861041 Stim-single6_S6_L004_R1_001.fastq.gz Stim-single6_S6_L004_R1_001.fastq.gz ERR1797416 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797416/ERR1797416_1.fastq.gz 298 150 immortal cell line cell CINGVCWTV peptide CL-Stim 6 -CL-Stim 6 ERS1505464 SAMEA50512168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 6 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 6 SAMEA50512168 sequencing assay ERX1861041 Stim-single6_S6_L004_R2_001.fastq.gz Stim-single6_S6_L004_R2_001.fastq.gz ERR1797416 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797416/ERR1797416_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 6 -CL-Stim 7 ERS1505465 SAMEA50512918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 7 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 7 SAMEA50512918 sequencing assay ERX1861042 Stim-single7_S7_L001_R1_001.fastq.gz Stim-single7_S7_L001_R1_001.fastq.gz ERR1797417 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797417/ERR1797417_1.fastq.gz 276 139 immortal cell line cell CINGVCWTV peptide CL-Stim 7 -CL-Stim 7 ERS1505465 SAMEA50512918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 7 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 7 SAMEA50512918 sequencing assay ERX1861042 Stim-single7_S7_L001_R2_001.fastq.gz Stim-single7_S7_L001_R2_001.fastq.gz ERR1797417 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797417/ERR1797417_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 7 -CL-Stim 7 ERS1505465 SAMEA50512918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 7 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 7 SAMEA50512918 sequencing assay ERX1861042 Stim-single7_S7_L002_R1_001.fastq.gz Stim-single7_S7_L002_R1_001.fastq.gz ERR1797418 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797418/ERR1797418_1.fastq.gz 234 118 immortal cell line cell CINGVCWTV peptide CL-Stim 7 -CL-Stim 7 ERS1505465 SAMEA50512918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 7 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 7 SAMEA50512918 sequencing assay ERX1861042 Stim-single7_S7_L002_R2_001.fastq.gz Stim-single7_S7_L002_R2_001.fastq.gz ERR1797418 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797418/ERR1797418_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 7 -CL-Stim 7 ERS1505465 SAMEA50512918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 7 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 7 SAMEA50512918 sequencing assay ERX1861042 Stim-single7_S7_L003_R1_001.fastq.gz Stim-single7_S7_L003_R1_001.fastq.gz ERR1797419 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797419/ERR1797419_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 7 -CL-Stim 7 ERS1505465 SAMEA50512918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 7 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 7 SAMEA50512918 sequencing assay ERX1861042 Stim-single7_S7_L003_R2_001.fastq.gz Stim-single7_S7_L003_R2_001.fastq.gz ERR1797419 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797419/ERR1797419_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 7 -CL-Stim 7 ERS1505465 SAMEA50512918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 7 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 7 SAMEA50512918 sequencing assay ERX1861042 Stim-single7_S7_L004_R1_001.fastq.gz Stim-single7_S7_L004_R1_001.fastq.gz ERR1797420 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797420/ERR1797420_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 7 -CL-Stim 7 ERS1505465 SAMEA50512918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 7 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 7 SAMEA50512918 sequencing assay ERX1861042 Stim-single7_S7_L004_R2_001.fastq.gz Stim-single7_S7_L004_R2_001.fastq.gz ERR1797420 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797420/ERR1797420_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 7 -CL-Stim 8 ERS1505466 SAMEA50513668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 8 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 8 SAMEA50513668 sequencing assay ERX1861043 Stim-single8_S8_L001_R1_001.fastq.gz Stim-single8_S8_L001_R1_001.fastq.gz ERR1797421 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797421/ERR1797421_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 8 -CL-Stim 8 ERS1505466 SAMEA50513668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 8 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 8 SAMEA50513668 sequencing assay ERX1861043 Stim-single8_S8_L001_R2_001.fastq.gz Stim-single8_S8_L001_R2_001.fastq.gz ERR1797421 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797421/ERR1797421_2.fastq.gz 70 36 immortal cell line cell CINGVCWTV peptide CL-Stim 8 -CL-Stim 8 ERS1505466 SAMEA50513668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 8 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 8 SAMEA50513668 sequencing assay ERX1861043 Stim-single8_S8_L002_R1_001.fastq.gz Stim-single8_S8_L002_R1_001.fastq.gz ERR1797422 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797422/ERR1797422_1.fastq.gz 236 119 immortal cell line cell CINGVCWTV peptide CL-Stim 8 -CL-Stim 8 ERS1505466 SAMEA50513668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 8 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 8 SAMEA50513668 sequencing assay ERX1861043 Stim-single8_S8_L002_R2_001.fastq.gz Stim-single8_S8_L002_R2_001.fastq.gz ERR1797422 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797422/ERR1797422_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 8 -CL-Stim 8 ERS1505466 SAMEA50513668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 8 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 8 SAMEA50513668 sequencing assay ERX1861043 Stim-single8_S8_L003_R1_001.fastq.gz Stim-single8_S8_L003_R1_001.fastq.gz ERR1797423 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797423/ERR1797423_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 8 -CL-Stim 8 ERS1505466 SAMEA50513668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 8 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 8 SAMEA50513668 sequencing assay ERX1861043 Stim-single8_S8_L003_R2_001.fastq.gz Stim-single8_S8_L003_R2_001.fastq.gz ERR1797423 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797423/ERR1797423_2.fastq.gz 300 151 immortal cell line cell CINGVCWTV peptide CL-Stim 8 -CL-Stim 8 ERS1505466 SAMEA50513668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 8 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 8 SAMEA50513668 sequencing assay ERX1861043 Stim-single8_S8_L004_R1_001.fastq.gz Stim-single8_S8_L004_R1_001.fastq.gz ERR1797424 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797424/ERR1797424_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 8 -CL-Stim 8 ERS1505466 SAMEA50513668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 8 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 8 SAMEA50513668 sequencing assay ERX1861043 Stim-single8_S8_L004_R2_001.fastq.gz Stim-single8_S8_L004_R2_001.fastq.gz ERR1797424 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797424/ERR1797424_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 8 -CL-Stim 9 ERS1505467 SAMEA50514418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 9 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 9 SAMEA50514418 sequencing assay ERX1861044 Stim-single9_S9_L001_R1_001.fastq.gz Stim-single9_S9_L001_R1_001.fastq.gz ERR1797425 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797425/ERR1797425_1.fastq.gz 250 126 immortal cell line cell CINGVCWTV peptide CL-Stim 9 -CL-Stim 9 ERS1505467 SAMEA50514418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 9 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 9 SAMEA50514418 sequencing assay ERX1861044 Stim-single9_S9_L001_R2_001.fastq.gz Stim-single9_S9_L001_R2_001.fastq.gz ERR1797425 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797425/ERR1797425_2.fastq.gz 70 36 immortal cell line cell CINGVCWTV peptide CL-Stim 9 -CL-Stim 9 ERS1505467 SAMEA50514418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 9 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 9 SAMEA50514418 sequencing assay ERX1861044 Stim-single9_S9_L002_R1_001.fastq.gz Stim-single9_S9_L002_R1_001.fastq.gz ERR1797426 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797426/ERR1797426_1.fastq.gz 226 114 immortal cell line cell CINGVCWTV peptide CL-Stim 9 -CL-Stim 9 ERS1505467 SAMEA50514418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 9 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 9 SAMEA50514418 sequencing assay ERX1861044 Stim-single9_S9_L002_R2_001.fastq.gz Stim-single9_S9_L002_R2_001.fastq.gz ERR1797426 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797426/ERR1797426_2.fastq.gz 70 36 immortal cell line cell CINGVCWTV peptide CL-Stim 9 -CL-Stim 9 ERS1505467 SAMEA50514418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 9 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 9 SAMEA50514418 sequencing assay ERX1861044 Stim-single9_S9_L003_R1_001.fastq.gz Stim-single9_S9_L003_R1_001.fastq.gz ERR1797427 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797427/ERR1797427_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 9 -CL-Stim 9 ERS1505467 SAMEA50514418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 9 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 9 SAMEA50514418 sequencing assay ERX1861044 Stim-single9_S9_L003_R2_001.fastq.gz Stim-single9_S9_L003_R2_001.fastq.gz ERR1797427 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797427/ERR1797427_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 9 -CL-Stim 9 ERS1505467 SAMEA50514418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 9 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 9 SAMEA50514418 sequencing assay ERX1861044 Stim-single9_S9_L004_R1_001.fastq.gz Stim-single9_S9_L004_R1_001.fastq.gz ERR1797428 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797428/ERR1797428_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 9 -CL-Stim 9 ERS1505467 SAMEA50514418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 9 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 9 SAMEA50514418 sequencing assay ERX1861044 Stim-single9_S9_L004_R2_001.fastq.gz Stim-single9_S9_L004_R2_001.fastq.gz ERR1797428 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797428/ERR1797428_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 9 -CL-Unstim 1 ERS1505468 SAMEA50515168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 1 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 1 SAMEA50515168 sequencing assay ERX1861045 Unstim-single1_S21_L001_R1_001.fastq.gz Unstim-single1_S21_L001_R1_001.fastq.gz ERR1797429 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797429/ERR1797429_1.fastq.gz 254 128 immortal cell line cell none CL-Unstim 1 -CL-Unstim 1 ERS1505468 SAMEA50515168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 1 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 1 SAMEA50515168 sequencing assay ERX1861045 Unstim-single1_S21_L001_R2_001.fastq.gz Unstim-single1_S21_L001_R2_001.fastq.gz ERR1797429 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797429/ERR1797429_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 1 -CL-Unstim 1 ERS1505468 SAMEA50515168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 1 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 1 SAMEA50515168 sequencing assay ERX1861045 Unstim-single1_S21_L002_R1_001.fastq.gz Unstim-single1_S21_L002_R1_001.fastq.gz ERR1797430 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797430/ERR1797430_1.fastq.gz 234 118 immortal cell line cell none CL-Unstim 1 -CL-Unstim 1 ERS1505468 SAMEA50515168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 1 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 1 SAMEA50515168 sequencing assay ERX1861045 Unstim-single1_S21_L002_R2_001.fastq.gz Unstim-single1_S21_L002_R2_001.fastq.gz ERR1797430 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797430/ERR1797430_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 1 -CL-Unstim 1 ERS1505468 SAMEA50515168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 1 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 1 SAMEA50515168 sequencing assay ERX1861045 Unstim-single1_S21_L003_R1_001.fastq.gz Unstim-single1_S21_L003_R1_001.fastq.gz ERR1797431 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797431/ERR1797431_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 1 -CL-Unstim 1 ERS1505468 SAMEA50515168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 1 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 1 SAMEA50515168 sequencing assay ERX1861045 Unstim-single1_S21_L003_R2_001.fastq.gz Unstim-single1_S21_L003_R2_001.fastq.gz ERR1797431 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797431/ERR1797431_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 1 -CL-Unstim 1 ERS1505468 SAMEA50515168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 1 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 1 SAMEA50515168 sequencing assay ERX1861045 Unstim-single1_S21_L004_R1_001.fastq.gz Unstim-single1_S21_L004_R1_001.fastq.gz ERR1797432 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797432/ERR1797432_1.fastq.gz 298 150 immortal cell line cell none CL-Unstim 1 -CL-Unstim 1 ERS1505468 SAMEA50515168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 1 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 1 SAMEA50515168 sequencing assay ERX1861045 Unstim-single1_S21_L004_R2_001.fastq.gz Unstim-single1_S21_L004_R2_001.fastq.gz ERR1797432 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797432/ERR1797432_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 1 -CL-Unstim 10 ERS1505469 SAMEA50515918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 10 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 10 SAMEA50515918 sequencing assay ERX1861046 Unstim-single10_S30_L001_R1_001.fastq.gz Unstim-single10_S30_L001_R1_001.fastq.gz ERR1797433 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797433/ERR1797433_1.fastq.gz 270 136 immortal cell line cell none CL-Unstim 10 -CL-Unstim 10 ERS1505469 SAMEA50515918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 10 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 10 SAMEA50515918 sequencing assay ERX1861046 Unstim-single10_S30_L001_R2_001.fastq.gz Unstim-single10_S30_L001_R2_001.fastq.gz ERR1797433 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797433/ERR1797433_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 10 -CL-Unstim 10 ERS1505469 SAMEA50515918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 10 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 10 SAMEA50515918 sequencing assay ERX1861046 Unstim-single10_S30_L002_R1_001.fastq.gz Unstim-single10_S30_L002_R1_001.fastq.gz ERR1797434 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797434/ERR1797434_1.fastq.gz 258 130 immortal cell line cell none CL-Unstim 10 -CL-Unstim 10 ERS1505469 SAMEA50515918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 10 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 10 SAMEA50515918 sequencing assay ERX1861046 Unstim-single10_S30_L002_R2_001.fastq.gz Unstim-single10_S30_L002_R2_001.fastq.gz ERR1797434 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797434/ERR1797434_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 10 -CL-Unstim 10 ERS1505469 SAMEA50515918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 10 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 10 SAMEA50515918 sequencing assay ERX1861046 Unstim-single10_S30_L003_R1_001.fastq.gz Unstim-single10_S30_L003_R1_001.fastq.gz ERR1797435 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797435/ERR1797435_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 10 -CL-Unstim 10 ERS1505469 SAMEA50515918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 10 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 10 SAMEA50515918 sequencing assay ERX1861046 Unstim-single10_S30_L003_R2_001.fastq.gz Unstim-single10_S30_L003_R2_001.fastq.gz ERR1797435 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797435/ERR1797435_2.fastq.gz 300 151 immortal cell line cell none CL-Unstim 10 -CL-Unstim 10 ERS1505469 SAMEA50515918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 10 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 10 SAMEA50515918 sequencing assay ERX1861046 Unstim-single10_S30_L004_R1_001.fastq.gz Unstim-single10_S30_L004_R1_001.fastq.gz ERR1797436 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797436/ERR1797436_1.fastq.gz 298 150 immortal cell line cell none CL-Unstim 10 -CL-Unstim 10 ERS1505469 SAMEA50515918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 10 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 10 SAMEA50515918 sequencing assay ERX1861046 Unstim-single10_S30_L004_R2_001.fastq.gz Unstim-single10_S30_L004_R2_001.fastq.gz ERR1797436 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797436/ERR1797436_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 10 -CL-Unstim 11 ERS1505470 SAMEA50516668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 11 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 11 SAMEA50516668 sequencing assay ERX1861047 Unstim-single11_S31_L001_R1_001.fastq.gz Unstim-single11_S31_L001_R1_001.fastq.gz ERR1797437 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797437/ERR1797437_1.fastq.gz 252 127 immortal cell line cell none CL-Unstim 11 -CL-Unstim 11 ERS1505470 SAMEA50516668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 11 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 11 SAMEA50516668 sequencing assay ERX1861047 Unstim-single11_S31_L001_R2_001.fastq.gz Unstim-single11_S31_L001_R2_001.fastq.gz ERR1797437 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797437/ERR1797437_2.fastq.gz 70 36 immortal cell line cell none CL-Unstim 11 -CL-Unstim 11 ERS1505470 SAMEA50516668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 11 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 11 SAMEA50516668 sequencing assay ERX1861047 Unstim-single11_S31_L002_R1_001.fastq.gz Unstim-single11_S31_L002_R1_001.fastq.gz ERR1797438 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797438/ERR1797438_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 11 -CL-Unstim 11 ERS1505470 SAMEA50516668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 11 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 11 SAMEA50516668 sequencing assay ERX1861047 Unstim-single11_S31_L002_R2_001.fastq.gz Unstim-single11_S31_L002_R2_001.fastq.gz ERR1797438 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797438/ERR1797438_2.fastq.gz 70 36 immortal cell line cell none CL-Unstim 11 -CL-Unstim 11 ERS1505470 SAMEA50516668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 11 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 11 SAMEA50516668 sequencing assay ERX1861047 Unstim-single11_S31_L003_R1_001.fastq.gz Unstim-single11_S31_L003_R1_001.fastq.gz ERR1797439 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797439/ERR1797439_1.fastq.gz 300 151 immortal cell line cell none CL-Unstim 11 -CL-Unstim 11 ERS1505470 SAMEA50516668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 11 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 11 SAMEA50516668 sequencing assay ERX1861047 Unstim-single11_S31_L003_R2_001.fastq.gz Unstim-single11_S31_L003_R2_001.fastq.gz ERR1797439 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797439/ERR1797439_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 11 -CL-Unstim 11 ERS1505470 SAMEA50516668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 11 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 11 SAMEA50516668 sequencing assay ERX1861047 Unstim-single11_S31_L004_R1_001.fastq.gz Unstim-single11_S31_L004_R1_001.fastq.gz ERR1797440 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797440/ERR1797440_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 11 -CL-Unstim 11 ERS1505470 SAMEA50516668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 11 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 11 SAMEA50516668 sequencing assay ERX1861047 Unstim-single11_S31_L004_R2_001.fastq.gz Unstim-single11_S31_L004_R2_001.fastq.gz ERR1797440 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797440/ERR1797440_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 11 -CL-Unstim 12 ERS1505471 SAMEA50517418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 12 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 12 SAMEA50517418 sequencing assay ERX1861048 Unstim-single12_S32_L001_R1_001.fastq.gz Unstim-single12_S32_L001_R1_001.fastq.gz ERR1797441 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797441/ERR1797441_1.fastq.gz 250 126 immortal cell line cell none CL-Unstim 12 -CL-Unstim 12 ERS1505471 SAMEA50517418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 12 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 12 SAMEA50517418 sequencing assay ERX1861048 Unstim-single12_S32_L001_R2_001.fastq.gz Unstim-single12_S32_L001_R2_001.fastq.gz ERR1797441 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797441/ERR1797441_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 12 -CL-Unstim 12 ERS1505471 SAMEA50517418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 12 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 12 SAMEA50517418 sequencing assay ERX1861048 Unstim-single12_S32_L002_R1_001.fastq.gz Unstim-single12_S32_L002_R1_001.fastq.gz ERR1797442 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797442/ERR1797442_1.fastq.gz 228 115 immortal cell line cell none CL-Unstim 12 -CL-Unstim 12 ERS1505471 SAMEA50517418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 12 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 12 SAMEA50517418 sequencing assay ERX1861048 Unstim-single12_S32_L002_R2_001.fastq.gz Unstim-single12_S32_L002_R2_001.fastq.gz ERR1797442 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797442/ERR1797442_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 12 -CL-Unstim 12 ERS1505471 SAMEA50517418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 12 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 12 SAMEA50517418 sequencing assay ERX1861048 Unstim-single12_S32_L003_R1_001.fastq.gz Unstim-single12_S32_L003_R1_001.fastq.gz ERR1797443 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797443/ERR1797443_1.fastq.gz 300 151 immortal cell line cell none CL-Unstim 12 -CL-Unstim 12 ERS1505471 SAMEA50517418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 12 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 12 SAMEA50517418 sequencing assay ERX1861048 Unstim-single12_S32_L003_R2_001.fastq.gz Unstim-single12_S32_L003_R2_001.fastq.gz ERR1797443 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797443/ERR1797443_2.fastq.gz 300 151 immortal cell line cell none CL-Unstim 12 -CL-Unstim 12 ERS1505471 SAMEA50517418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 12 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 12 SAMEA50517418 sequencing assay ERX1861048 Unstim-single12_S32_L004_R1_001.fastq.gz Unstim-single12_S32_L004_R1_001.fastq.gz ERR1797444 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797444/ERR1797444_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 12 -CL-Unstim 12 ERS1505471 SAMEA50517418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 12 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 12 SAMEA50517418 sequencing assay ERX1861048 Unstim-single12_S32_L004_R2_001.fastq.gz Unstim-single12_S32_L004_R2_001.fastq.gz ERR1797444 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797444/ERR1797444_2.fastq.gz 300 151 immortal cell line cell none CL-Unstim 12 -CL-Unstim 13 ERS1505472 SAMEA50518168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 13 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 13 SAMEA50518168 sequencing assay ERX1861049 Unstim-single13_S33_L001_R1_001.fastq.gz Unstim-single13_S33_L001_R1_001.fastq.gz ERR1797445 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797445/ERR1797445_1.fastq.gz 282 142 immortal cell line cell none CL-Unstim 13 -CL-Unstim 13 ERS1505472 SAMEA50518168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 13 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 13 SAMEA50518168 sequencing assay ERX1861049 Unstim-single13_S33_L001_R2_001.fastq.gz Unstim-single13_S33_L001_R2_001.fastq.gz ERR1797445 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797445/ERR1797445_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 13 -CL-Unstim 13 ERS1505472 SAMEA50518168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 13 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 13 SAMEA50518168 sequencing assay ERX1861049 Unstim-single13_S33_L002_R1_001.fastq.gz Unstim-single13_S33_L002_R1_001.fastq.gz ERR1797446 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797446/ERR1797446_1.fastq.gz 234 118 immortal cell line cell none CL-Unstim 13 -CL-Unstim 13 ERS1505472 SAMEA50518168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 13 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 13 SAMEA50518168 sequencing assay ERX1861049 Unstim-single13_S33_L002_R2_001.fastq.gz Unstim-single13_S33_L002_R2_001.fastq.gz ERR1797446 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797446/ERR1797446_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 13 -CL-Unstim 13 ERS1505472 SAMEA50518168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 13 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 13 SAMEA50518168 sequencing assay ERX1861049 Unstim-single13_S33_L003_R1_001.fastq.gz Unstim-single13_S33_L003_R1_001.fastq.gz ERR1797447 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797447/ERR1797447_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 13 -CL-Unstim 13 ERS1505472 SAMEA50518168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 13 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 13 SAMEA50518168 sequencing assay ERX1861049 Unstim-single13_S33_L003_R2_001.fastq.gz Unstim-single13_S33_L003_R2_001.fastq.gz ERR1797447 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797447/ERR1797447_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 13 -CL-Unstim 13 ERS1505472 SAMEA50518168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 13 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 13 SAMEA50518168 sequencing assay ERX1861049 Unstim-single13_S33_L004_R1_001.fastq.gz Unstim-single13_S33_L004_R1_001.fastq.gz ERR1797448 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797448/ERR1797448_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 13 -CL-Unstim 13 ERS1505472 SAMEA50518168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 13 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 13 SAMEA50518168 sequencing assay ERX1861049 Unstim-single13_S33_L004_R2_001.fastq.gz Unstim-single13_S33_L004_R2_001.fastq.gz ERR1797448 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797448/ERR1797448_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 13 -CL-Unstim 14 ERS1505473 SAMEA50518918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 14 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 14 SAMEA50518918 sequencing assay ERX1861050 Unstim-single14_S34_L001_R1_001.fastq.gz Unstim-single14_S34_L001_R1_001.fastq.gz ERR1797449 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797449/ERR1797449_1.fastq.gz 250 126 immortal cell line cell none CL-Unstim 14 -CL-Unstim 14 ERS1505473 SAMEA50518918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 14 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 14 SAMEA50518918 sequencing assay ERX1861050 Unstim-single14_S34_L001_R2_001.fastq.gz Unstim-single14_S34_L001_R2_001.fastq.gz ERR1797449 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797449/ERR1797449_2.fastq.gz 70 36 immortal cell line cell none CL-Unstim 14 -CL-Unstim 14 ERS1505473 SAMEA50518918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 14 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 14 SAMEA50518918 sequencing assay ERX1861050 Unstim-single14_S34_L002_R1_001.fastq.gz Unstim-single14_S34_L002_R1_001.fastq.gz ERR1797450 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797450/ERR1797450_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 14 -CL-Unstim 14 ERS1505473 SAMEA50518918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 14 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 14 SAMEA50518918 sequencing assay ERX1861050 Unstim-single14_S34_L002_R2_001.fastq.gz Unstim-single14_S34_L002_R2_001.fastq.gz ERR1797450 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797450/ERR1797450_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 14 -CL-Unstim 14 ERS1505473 SAMEA50518918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 14 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 14 SAMEA50518918 sequencing assay ERX1861050 Unstim-single14_S34_L003_R1_001.fastq.gz Unstim-single14_S34_L003_R1_001.fastq.gz ERR1797451 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797451/ERR1797451_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 14 -CL-Unstim 14 ERS1505473 SAMEA50518918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 14 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 14 SAMEA50518918 sequencing assay ERX1861050 Unstim-single14_S34_L003_R2_001.fastq.gz Unstim-single14_S34_L003_R2_001.fastq.gz ERR1797451 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797451/ERR1797451_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 14 -CL-Unstim 14 ERS1505473 SAMEA50518918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 14 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 14 SAMEA50518918 sequencing assay ERX1861050 Unstim-single14_S34_L004_R1_001.fastq.gz Unstim-single14_S34_L004_R1_001.fastq.gz ERR1797452 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797452/ERR1797452_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 14 -CL-Unstim 14 ERS1505473 SAMEA50518918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 14 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 14 SAMEA50518918 sequencing assay ERX1861050 Unstim-single14_S34_L004_R2_001.fastq.gz Unstim-single14_S34_L004_R2_001.fastq.gz ERR1797452 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797452/ERR1797452_2.fastq.gz 300 151 immortal cell line cell none CL-Unstim 14 -CL-Unstim 15 ERS1505474 SAMEA50519668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 15 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 15 SAMEA50519668 sequencing assay ERX1861051 Unstim-single15_S35_L001_R1_001.fastq.gz Unstim-single15_S35_L001_R1_001.fastq.gz ERR1797453 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797453/ERR1797453_1.fastq.gz 250 126 immortal cell line cell none CL-Unstim 15 -CL-Unstim 15 ERS1505474 SAMEA50519668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 15 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 15 SAMEA50519668 sequencing assay ERX1861051 Unstim-single15_S35_L001_R2_001.fastq.gz Unstim-single15_S35_L001_R2_001.fastq.gz ERR1797453 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797453/ERR1797453_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 15 -CL-Unstim 15 ERS1505474 SAMEA50519668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 15 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 15 SAMEA50519668 sequencing assay ERX1861051 Unstim-single15_S35_L002_R1_001.fastq.gz Unstim-single15_S35_L002_R1_001.fastq.gz ERR1797454 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797454/ERR1797454_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 15 -CL-Unstim 15 ERS1505474 SAMEA50519668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 15 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 15 SAMEA50519668 sequencing assay ERX1861051 Unstim-single15_S35_L002_R2_001.fastq.gz Unstim-single15_S35_L002_R2_001.fastq.gz ERR1797454 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797454/ERR1797454_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 15 -CL-Unstim 15 ERS1505474 SAMEA50519668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 15 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 15 SAMEA50519668 sequencing assay ERX1861051 Unstim-single15_S35_L003_R1_001.fastq.gz Unstim-single15_S35_L003_R1_001.fastq.gz ERR1797455 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797455/ERR1797455_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 15 -CL-Unstim 15 ERS1505474 SAMEA50519668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 15 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 15 SAMEA50519668 sequencing assay ERX1861051 Unstim-single15_S35_L003_R2_001.fastq.gz Unstim-single15_S35_L003_R2_001.fastq.gz ERR1797455 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797455/ERR1797455_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 15 -CL-Unstim 15 ERS1505474 SAMEA50519668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 15 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 15 SAMEA50519668 sequencing assay ERX1861051 Unstim-single15_S35_L004_R1_001.fastq.gz Unstim-single15_S35_L004_R1_001.fastq.gz ERR1797456 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797456/ERR1797456_1.fastq.gz 300 151 immortal cell line cell none CL-Unstim 15 -CL-Unstim 15 ERS1505474 SAMEA50519668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 15 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 15 SAMEA50519668 sequencing assay ERX1861051 Unstim-single15_S35_L004_R2_001.fastq.gz Unstim-single15_S35_L004_R2_001.fastq.gz ERR1797456 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797456/ERR1797456_2.fastq.gz 300 151 immortal cell line cell none CL-Unstim 15 -CL-Unstim 16 ERS1505475 SAMEA50520418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 16 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 16 SAMEA50520418 sequencing assay ERX1861052 Unstim-single16_S36_L001_R1_001.fastq.gz Unstim-single16_S36_L001_R1_001.fastq.gz ERR1797457 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797457/ERR1797457_1.fastq.gz 300 151 immortal cell line cell none CL-Unstim 16 -CL-Unstim 16 ERS1505475 SAMEA50520418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 16 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 16 SAMEA50520418 sequencing assay ERX1861052 Unstim-single16_S36_L001_R2_001.fastq.gz Unstim-single16_S36_L001_R2_001.fastq.gz ERR1797457 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797457/ERR1797457_2.fastq.gz 70 36 immortal cell line cell none CL-Unstim 16 -CL-Unstim 16 ERS1505475 SAMEA50520418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 16 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 16 SAMEA50520418 sequencing assay ERX1861052 Unstim-single16_S36_L002_R1_001.fastq.gz Unstim-single16_S36_L002_R1_001.fastq.gz ERR1797458 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797458/ERR1797458_1.fastq.gz 236 119 immortal cell line cell none CL-Unstim 16 -CL-Unstim 16 ERS1505475 SAMEA50520418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 16 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 16 SAMEA50520418 sequencing assay ERX1861052 Unstim-single16_S36_L002_R2_001.fastq.gz Unstim-single16_S36_L002_R2_001.fastq.gz ERR1797458 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797458/ERR1797458_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 16 -CL-Unstim 16 ERS1505475 SAMEA50520418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 16 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 16 SAMEA50520418 sequencing assay ERX1861052 Unstim-single16_S36_L003_R1_001.fastq.gz Unstim-single16_S36_L003_R1_001.fastq.gz ERR1797459 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797459/ERR1797459_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 16 -CL-Unstim 16 ERS1505475 SAMEA50520418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 16 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 16 SAMEA50520418 sequencing assay ERX1861052 Unstim-single16_S36_L003_R2_001.fastq.gz Unstim-single16_S36_L003_R2_001.fastq.gz ERR1797459 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797459/ERR1797459_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 16 -CL-Unstim 16 ERS1505475 SAMEA50520418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 16 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 16 SAMEA50520418 sequencing assay ERX1861052 Unstim-single16_S36_L004_R1_001.fastq.gz Unstim-single16_S36_L004_R1_001.fastq.gz ERR1797460 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797460/ERR1797460_1.fastq.gz 300 151 immortal cell line cell none CL-Unstim 16 -CL-Unstim 16 ERS1505475 SAMEA50520418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 16 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 16 SAMEA50520418 sequencing assay ERX1861052 Unstim-single16_S36_L004_R2_001.fastq.gz Unstim-single16_S36_L004_R2_001.fastq.gz ERR1797460 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797460/ERR1797460_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 16 -CL-Unstim 17 ERS1505476 SAMEA50521168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 17 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 17 SAMEA50521168 sequencing assay ERX1861053 Unstim-single17_S37_L001_R1_001.fastq.gz Unstim-single17_S37_L001_R1_001.fastq.gz ERR1797461 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797461/ERR1797461_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 17 -CL-Unstim 17 ERS1505476 SAMEA50521168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 17 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 17 SAMEA50521168 sequencing assay ERX1861053 Unstim-single17_S37_L001_R2_001.fastq.gz Unstim-single17_S37_L001_R2_001.fastq.gz ERR1797461 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797461/ERR1797461_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 17 -CL-Unstim 17 ERS1505476 SAMEA50521168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 17 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 17 SAMEA50521168 sequencing assay ERX1861053 Unstim-single17_S37_L002_R1_001.fastq.gz Unstim-single17_S37_L002_R1_001.fastq.gz ERR1797462 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797462/ERR1797462_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 17 -CL-Unstim 17 ERS1505476 SAMEA50521168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 17 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 17 SAMEA50521168 sequencing assay ERX1861053 Unstim-single17_S37_L002_R2_001.fastq.gz Unstim-single17_S37_L002_R2_001.fastq.gz ERR1797462 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797462/ERR1797462_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 17 -CL-Unstim 17 ERS1505476 SAMEA50521168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 17 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 17 SAMEA50521168 sequencing assay ERX1861053 Unstim-single17_S37_L003_R1_001.fastq.gz Unstim-single17_S37_L003_R1_001.fastq.gz ERR1797463 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797463/ERR1797463_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 17 -CL-Unstim 17 ERS1505476 SAMEA50521168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 17 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 17 SAMEA50521168 sequencing assay ERX1861053 Unstim-single17_S37_L003_R2_001.fastq.gz Unstim-single17_S37_L003_R2_001.fastq.gz ERR1797463 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797463/ERR1797463_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 17 -CL-Unstim 17 ERS1505476 SAMEA50521168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 17 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 17 SAMEA50521168 sequencing assay ERX1861053 Unstim-single17_S37_L004_R1_001.fastq.gz Unstim-single17_S37_L004_R1_001.fastq.gz ERR1797464 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797464/ERR1797464_1.fastq.gz 260 131 immortal cell line cell none CL-Unstim 17 -CL-Unstim 17 ERS1505476 SAMEA50521168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 17 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 17 SAMEA50521168 sequencing assay ERX1861053 Unstim-single17_S37_L004_R2_001.fastq.gz Unstim-single17_S37_L004_R2_001.fastq.gz ERR1797464 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797464/ERR1797464_2.fastq.gz 260 131 immortal cell line cell none CL-Unstim 17 -CL-Unstim 18 ERS1505477 SAMEA50521918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 18 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 18 SAMEA50521918 sequencing assay ERX1861054 Unstim-single18_S38_L001_R1_001.fastq.gz Unstim-single18_S38_L001_R1_001.fastq.gz ERR1797465 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797465/ERR1797465_1.fastq.gz 276 139 immortal cell line cell none CL-Unstim 18 -CL-Unstim 18 ERS1505477 SAMEA50521918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 18 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 18 SAMEA50521918 sequencing assay ERX1861054 Unstim-single18_S38_L001_R2_001.fastq.gz Unstim-single18_S38_L001_R2_001.fastq.gz ERR1797465 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797465/ERR1797465_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 18 -CL-Unstim 18 ERS1505477 SAMEA50521918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 18 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 18 SAMEA50521918 sequencing assay ERX1861054 Unstim-single18_S38_L002_R1_001.fastq.gz Unstim-single18_S38_L002_R1_001.fastq.gz ERR1797466 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797466/ERR1797466_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 18 -CL-Unstim 18 ERS1505477 SAMEA50521918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 18 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 18 SAMEA50521918 sequencing assay ERX1861054 Unstim-single18_S38_L002_R2_001.fastq.gz Unstim-single18_S38_L002_R2_001.fastq.gz ERR1797466 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797466/ERR1797466_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 18 -CL-Unstim 18 ERS1505477 SAMEA50521918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 18 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 18 SAMEA50521918 sequencing assay ERX1861054 Unstim-single18_S38_L003_R1_001.fastq.gz Unstim-single18_S38_L003_R1_001.fastq.gz ERR1797467 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797467/ERR1797467_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 18 -CL-Unstim 18 ERS1505477 SAMEA50521918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 18 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 18 SAMEA50521918 sequencing assay ERX1861054 Unstim-single18_S38_L003_R2_001.fastq.gz Unstim-single18_S38_L003_R2_001.fastq.gz ERR1797467 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797467/ERR1797467_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 18 -CL-Unstim 18 ERS1505477 SAMEA50521918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 18 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 18 SAMEA50521918 sequencing assay ERX1861054 Unstim-single18_S38_L004_R1_001.fastq.gz Unstim-single18_S38_L004_R1_001.fastq.gz ERR1797468 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797468/ERR1797468_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 18 -CL-Unstim 18 ERS1505477 SAMEA50521918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 18 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 18 SAMEA50521918 sequencing assay ERX1861054 Unstim-single18_S38_L004_R2_001.fastq.gz Unstim-single18_S38_L004_R2_001.fastq.gz ERR1797468 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797468/ERR1797468_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 18 -CL-Unstim 2 ERS1505478 SAMEA50522668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 2 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 2 SAMEA50522668 sequencing assay ERX1861055 Unstim-single2_S22_L001_R1_001.fastq.gz Unstim-single2_S22_L001_R1_001.fastq.gz ERR1797469 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797469/ERR1797469_1.fastq.gz 266 134 immortal cell line cell none CL-Unstim 2 -CL-Unstim 2 ERS1505478 SAMEA50522668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 2 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 2 SAMEA50522668 sequencing assay ERX1861055 Unstim-single2_S22_L001_R2_001.fastq.gz Unstim-single2_S22_L001_R2_001.fastq.gz ERR1797469 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797469/ERR1797469_2.fastq.gz 70 36 immortal cell line cell none CL-Unstim 2 -CL-Unstim 2 ERS1505478 SAMEA50522668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 2 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 2 SAMEA50522668 sequencing assay ERX1861055 Unstim-single2_S22_L002_R1_001.fastq.gz Unstim-single2_S22_L002_R1_001.fastq.gz ERR1797470 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797470/ERR1797470_1.fastq.gz 182 92 immortal cell line cell none CL-Unstim 2 -CL-Unstim 2 ERS1505478 SAMEA50522668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 2 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 2 SAMEA50522668 sequencing assay ERX1861055 Unstim-single2_S22_L002_R2_001.fastq.gz Unstim-single2_S22_L002_R2_001.fastq.gz ERR1797470 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797470/ERR1797470_2.fastq.gz 70 36 immortal cell line cell none CL-Unstim 2 -CL-Unstim 2 ERS1505478 SAMEA50522668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 2 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 2 SAMEA50522668 sequencing assay ERX1861055 Unstim-single2_S22_L003_R1_001.fastq.gz Unstim-single2_S22_L003_R1_001.fastq.gz ERR1797471 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797471/ERR1797471_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 2 -CL-Unstim 2 ERS1505478 SAMEA50522668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 2 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 2 SAMEA50522668 sequencing assay ERX1861055 Unstim-single2_S22_L003_R2_001.fastq.gz Unstim-single2_S22_L003_R2_001.fastq.gz ERR1797471 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797471/ERR1797471_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 2 -CL-Unstim 2 ERS1505478 SAMEA50522668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 2 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 2 SAMEA50522668 sequencing assay ERX1861055 Unstim-single2_S22_L004_R1_001.fastq.gz Unstim-single2_S22_L004_R1_001.fastq.gz ERR1797472 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797472/ERR1797472_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 2 -CL-Unstim 2 ERS1505478 SAMEA50522668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 2 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 2 SAMEA50522668 sequencing assay ERX1861055 Unstim-single2_S22_L004_R2_001.fastq.gz Unstim-single2_S22_L004_R2_001.fastq.gz ERR1797472 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797472/ERR1797472_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 2 -CL-Unstim 3 ERS1505479 SAMEA50523418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 3 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 3 SAMEA50523418 sequencing assay ERX1861056 Unstim-single3_S23_L001_R1_001.fastq.gz Unstim-single3_S23_L001_R1_001.fastq.gz ERR1797473 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797473/ERR1797473_1.fastq.gz 250 126 immortal cell line cell none CL-Unstim 3 -CL-Unstim 3 ERS1505479 SAMEA50523418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 3 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 3 SAMEA50523418 sequencing assay ERX1861056 Unstim-single3_S23_L001_R2_001.fastq.gz Unstim-single3_S23_L001_R2_001.fastq.gz ERR1797473 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797473/ERR1797473_2.fastq.gz 70 36 immortal cell line cell none CL-Unstim 3 -CL-Unstim 3 ERS1505479 SAMEA50523418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 3 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 3 SAMEA50523418 sequencing assay ERX1861056 Unstim-single3_S23_L002_R1_001.fastq.gz Unstim-single3_S23_L002_R1_001.fastq.gz ERR1797474 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797474/ERR1797474_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 3 -CL-Unstim 3 ERS1505479 SAMEA50523418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 3 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 3 SAMEA50523418 sequencing assay ERX1861056 Unstim-single3_S23_L002_R2_001.fastq.gz Unstim-single3_S23_L002_R2_001.fastq.gz ERR1797474 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797474/ERR1797474_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 3 -CL-Unstim 3 ERS1505479 SAMEA50523418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 3 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 3 SAMEA50523418 sequencing assay ERX1861056 Unstim-single3_S23_L003_R1_001.fastq.gz Unstim-single3_S23_L003_R1_001.fastq.gz ERR1797475 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797475/ERR1797475_1.fastq.gz 198 100 immortal cell line cell none CL-Unstim 3 -CL-Unstim 3 ERS1505479 SAMEA50523418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 3 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 3 SAMEA50523418 sequencing assay ERX1861056 Unstim-single3_S23_L003_R2_001.fastq.gz Unstim-single3_S23_L003_R2_001.fastq.gz ERR1797475 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797475/ERR1797475_2.fastq.gz 198 100 immortal cell line cell none CL-Unstim 3 -CL-Unstim 3 ERS1505479 SAMEA50523418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 3 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 3 SAMEA50523418 sequencing assay ERX1861056 Unstim-single3_S23_L004_R1_001.fastq.gz Unstim-single3_S23_L004_R1_001.fastq.gz ERR1797476 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797476/ERR1797476_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 3 -CL-Unstim 3 ERS1505479 SAMEA50523418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 3 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 3 SAMEA50523418 sequencing assay ERX1861056 Unstim-single3_S23_L004_R2_001.fastq.gz Unstim-single3_S23_L004_R2_001.fastq.gz ERR1797476 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797476/ERR1797476_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 3 -CL-Unstim 4 ERS1505480 SAMEA50524168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 4 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 4 SAMEA50524168 sequencing assay ERX1861057 Unstim-single4_S24_L001_R1_001.fastq.gz Unstim-single4_S24_L001_R1_001.fastq.gz ERR1797477 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797477/ERR1797477_1.fastq.gz 288 145 immortal cell line cell none CL-Unstim 4 -CL-Unstim 4 ERS1505480 SAMEA50524168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 4 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 4 SAMEA50524168 sequencing assay ERX1861057 Unstim-single4_S24_L001_R2_001.fastq.gz Unstim-single4_S24_L001_R2_001.fastq.gz ERR1797477 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797477/ERR1797477_2.fastq.gz 70 36 immortal cell line cell none CL-Unstim 4 -CL-Unstim 4 ERS1505480 SAMEA50524168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 4 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 4 SAMEA50524168 sequencing assay ERX1861057 Unstim-single4_S24_L002_R1_001.fastq.gz Unstim-single4_S24_L002_R1_001.fastq.gz ERR1797478 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797478/ERR1797478_1.fastq.gz 260 131 immortal cell line cell none CL-Unstim 4 -CL-Unstim 4 ERS1505480 SAMEA50524168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 4 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 4 SAMEA50524168 sequencing assay ERX1861057 Unstim-single4_S24_L002_R2_001.fastq.gz Unstim-single4_S24_L002_R2_001.fastq.gz ERR1797478 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797478/ERR1797478_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 4 -CL-Unstim 4 ERS1505480 SAMEA50524168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 4 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 4 SAMEA50524168 sequencing assay ERX1861057 Unstim-single4_S24_L003_R1_001.fastq.gz Unstim-single4_S24_L003_R1_001.fastq.gz ERR1797479 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797479/ERR1797479_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 4 -CL-Unstim 4 ERS1505480 SAMEA50524168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 4 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 4 SAMEA50524168 sequencing assay ERX1861057 Unstim-single4_S24_L003_R2_001.fastq.gz Unstim-single4_S24_L003_R2_001.fastq.gz ERR1797479 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797479/ERR1797479_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 4 -CL-Unstim 4 ERS1505480 SAMEA50524168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 4 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 4 SAMEA50524168 sequencing assay ERX1861057 Unstim-single4_S24_L004_R1_001.fastq.gz Unstim-single4_S24_L004_R1_001.fastq.gz ERR1797480 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797480/ERR1797480_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 4 -CL-Unstim 4 ERS1505480 SAMEA50524168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 4 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 4 SAMEA50524168 sequencing assay ERX1861057 Unstim-single4_S24_L004_R2_001.fastq.gz Unstim-single4_S24_L004_R2_001.fastq.gz ERR1797480 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797480/ERR1797480_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 4 -CL-Unstim 5 ERS1505481 SAMEA50524918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 5 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 5 SAMEA50524918 sequencing assay ERX1861058 Unstim-single5_S25_L001_R1_001.fastq.gz Unstim-single5_S25_L001_R1_001.fastq.gz ERR1797481 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797481/ERR1797481_1.fastq.gz 280 141 immortal cell line cell none CL-Unstim 5 -CL-Unstim 5 ERS1505481 SAMEA50524918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 5 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 5 SAMEA50524918 sequencing assay ERX1861058 Unstim-single5_S25_L001_R2_001.fastq.gz Unstim-single5_S25_L001_R2_001.fastq.gz ERR1797481 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797481/ERR1797481_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 5 -CL-Unstim 5 ERS1505481 SAMEA50524918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 5 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 5 SAMEA50524918 sequencing assay ERX1861058 Unstim-single5_S25_L002_R1_001.fastq.gz Unstim-single5_S25_L002_R1_001.fastq.gz ERR1797482 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797482/ERR1797482_1.fastq.gz 232 117 immortal cell line cell none CL-Unstim 5 -CL-Unstim 5 ERS1505481 SAMEA50524918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 5 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 5 SAMEA50524918 sequencing assay ERX1861058 Unstim-single5_S25_L002_R2_001.fastq.gz Unstim-single5_S25_L002_R2_001.fastq.gz ERR1797482 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797482/ERR1797482_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 5 -CL-Unstim 5 ERS1505481 SAMEA50524918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 5 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 5 SAMEA50524918 sequencing assay ERX1861058 Unstim-single5_S25_L003_R1_001.fastq.gz Unstim-single5_S25_L003_R1_001.fastq.gz ERR1797483 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797483/ERR1797483_1.fastq.gz 296 149 immortal cell line cell none CL-Unstim 5 -CL-Unstim 5 ERS1505481 SAMEA50524918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 5 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 5 SAMEA50524918 sequencing assay ERX1861058 Unstim-single5_S25_L003_R2_001.fastq.gz Unstim-single5_S25_L003_R2_001.fastq.gz ERR1797483 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797483/ERR1797483_2.fastq.gz 300 151 immortal cell line cell none CL-Unstim 5 -CL-Unstim 5 ERS1505481 SAMEA50524918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 5 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 5 SAMEA50524918 sequencing assay ERX1861058 Unstim-single5_S25_L004_R1_001.fastq.gz Unstim-single5_S25_L004_R1_001.fastq.gz ERR1797484 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797484/ERR1797484_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 5 -CL-Unstim 5 ERS1505481 SAMEA50524918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 5 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 5 SAMEA50524918 sequencing assay ERX1861058 Unstim-single5_S25_L004_R2_001.fastq.gz Unstim-single5_S25_L004_R2_001.fastq.gz ERR1797484 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797484/ERR1797484_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 5 -CL-Unstim 6 ERS1505482 SAMEA50525668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 6 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 6 SAMEA50525668 sequencing assay ERX1861059 Unstim-single6_S26_L001_R1_001.fastq.gz Unstim-single6_S26_L001_R1_001.fastq.gz ERR1797485 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797485/ERR1797485_1.fastq.gz 116 59 immortal cell line cell none CL-Unstim 6 -CL-Unstim 6 ERS1505482 SAMEA50525668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 6 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 6 SAMEA50525668 sequencing assay ERX1861059 Unstim-single6_S26_L001_R2_001.fastq.gz Unstim-single6_S26_L001_R2_001.fastq.gz ERR1797485 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797485/ERR1797485_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 6 -CL-Unstim 6 ERS1505482 SAMEA50525668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 6 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 6 SAMEA50525668 sequencing assay ERX1861059 Unstim-single6_S26_L002_R1_001.fastq.gz Unstim-single6_S26_L002_R1_001.fastq.gz ERR1797486 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797486/ERR1797486_1.fastq.gz 272 137 immortal cell line cell none CL-Unstim 6 -CL-Unstim 6 ERS1505482 SAMEA50525668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 6 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 6 SAMEA50525668 sequencing assay ERX1861059 Unstim-single6_S26_L002_R2_001.fastq.gz Unstim-single6_S26_L002_R2_001.fastq.gz ERR1797486 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797486/ERR1797486_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 6 -CL-Unstim 6 ERS1505482 SAMEA50525668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 6 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 6 SAMEA50525668 sequencing assay ERX1861059 Unstim-single6_S26_L003_R1_001.fastq.gz Unstim-single6_S26_L003_R1_001.fastq.gz ERR1797487 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797487/ERR1797487_1.fastq.gz 284 143 immortal cell line cell none CL-Unstim 6 -CL-Unstim 6 ERS1505482 SAMEA50525668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 6 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 6 SAMEA50525668 sequencing assay ERX1861059 Unstim-single6_S26_L003_R2_001.fastq.gz Unstim-single6_S26_L003_R2_001.fastq.gz ERR1797487 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797487/ERR1797487_2.fastq.gz 284 143 immortal cell line cell none CL-Unstim 6 -CL-Unstim 6 ERS1505482 SAMEA50525668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 6 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 6 SAMEA50525668 sequencing assay ERX1861059 Unstim-single6_S26_L004_R1_001.fastq.gz Unstim-single6_S26_L004_R1_001.fastq.gz ERR1797488 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797488/ERR1797488_1.fastq.gz 210 106 immortal cell line cell none CL-Unstim 6 -CL-Unstim 6 ERS1505482 SAMEA50525668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 6 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 6 SAMEA50525668 sequencing assay ERX1861059 Unstim-single6_S26_L004_R2_001.fastq.gz Unstim-single6_S26_L004_R2_001.fastq.gz ERR1797488 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797488/ERR1797488_2.fastq.gz 210 106 immortal cell line cell none CL-Unstim 6 -CL-Unstim 7 ERS1505483 SAMEA50526418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 7 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 7 SAMEA50526418 sequencing assay ERX1861060 Unstim-single7_S27_L001_R1_001.fastq.gz Unstim-single7_S27_L001_R1_001.fastq.gz ERR1797489 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797489/ERR1797489_1.fastq.gz 270 136 immortal cell line cell none CL-Unstim 7 -CL-Unstim 7 ERS1505483 SAMEA50526418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 7 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 7 SAMEA50526418 sequencing assay ERX1861060 Unstim-single7_S27_L001_R2_001.fastq.gz Unstim-single7_S27_L001_R2_001.fastq.gz ERR1797489 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797489/ERR1797489_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 7 -CL-Unstim 7 ERS1505483 SAMEA50526418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 7 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 7 SAMEA50526418 sequencing assay ERX1861060 Unstim-single7_S27_L002_R1_001.fastq.gz Unstim-single7_S27_L002_R1_001.fastq.gz ERR1797490 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797490/ERR1797490_1.fastq.gz 236 119 immortal cell line cell none CL-Unstim 7 -CL-Unstim 7 ERS1505483 SAMEA50526418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 7 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 7 SAMEA50526418 sequencing assay ERX1861060 Unstim-single7_S27_L002_R2_001.fastq.gz Unstim-single7_S27_L002_R2_001.fastq.gz ERR1797490 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797490/ERR1797490_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 7 -CL-Unstim 7 ERS1505483 SAMEA50526418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 7 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 7 SAMEA50526418 sequencing assay ERX1861060 Unstim-single7_S27_L003_R1_001.fastq.gz Unstim-single7_S27_L003_R1_001.fastq.gz ERR1797491 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797491/ERR1797491_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 7 -CL-Unstim 7 ERS1505483 SAMEA50526418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 7 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 7 SAMEA50526418 sequencing assay ERX1861060 Unstim-single7_S27_L003_R2_001.fastq.gz Unstim-single7_S27_L003_R2_001.fastq.gz ERR1797491 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797491/ERR1797491_2.fastq.gz 298 150 immortal cell line cell none CL-Unstim 7 -CL-Unstim 7 ERS1505483 SAMEA50526418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 7 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 7 SAMEA50526418 sequencing assay ERX1861060 Unstim-single7_S27_L004_R1_001.fastq.gz Unstim-single7_S27_L004_R1_001.fastq.gz ERR1797492 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797492/ERR1797492_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 7 -CL-Unstim 7 ERS1505483 SAMEA50526418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 7 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 7 SAMEA50526418 sequencing assay ERX1861060 Unstim-single7_S27_L004_R2_001.fastq.gz Unstim-single7_S27_L004_R2_001.fastq.gz ERR1797492 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797492/ERR1797492_2.fastq.gz 300 151 immortal cell line cell none CL-Unstim 7 -CL-Unstim 8 ERS1505484 SAMEA50527168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 8 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 8 SAMEA50527168 sequencing assay ERX1861061 Unstim-single8_S28_L001_R1_001.fastq.gz Unstim-single8_S28_L001_R1_001.fastq.gz ERR1797493 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797493/ERR1797493_1.fastq.gz 294 148 immortal cell line cell none CL-Unstim 8 -CL-Unstim 8 ERS1505484 SAMEA50527168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 8 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 8 SAMEA50527168 sequencing assay ERX1861061 Unstim-single8_S28_L001_R2_001.fastq.gz Unstim-single8_S28_L001_R2_001.fastq.gz ERR1797493 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797493/ERR1797493_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 8 -CL-Unstim 8 ERS1505484 SAMEA50527168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 8 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 8 SAMEA50527168 sequencing assay ERX1861061 Unstim-single8_S28_L002_R1_001.fastq.gz Unstim-single8_S28_L002_R1_001.fastq.gz ERR1797494 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797494/ERR1797494_1.fastq.gz 70 36 immortal cell line cell none CL-Unstim 8 -CL-Unstim 8 ERS1505484 SAMEA50527168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 8 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 8 SAMEA50527168 sequencing assay ERX1861061 Unstim-single8_S28_L002_R2_001.fastq.gz Unstim-single8_S28_L002_R2_001.fastq.gz ERR1797494 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797494/ERR1797494_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 8 -CL-Unstim 8 ERS1505484 SAMEA50527168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 8 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 8 SAMEA50527168 sequencing assay ERX1861061 Unstim-single8_S28_L003_R1_001.fastq.gz Unstim-single8_S28_L003_R1_001.fastq.gz ERR1797495 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797495/ERR1797495_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 8 -CL-Unstim 8 ERS1505484 SAMEA50527168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 8 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 8 SAMEA50527168 sequencing assay ERX1861061 Unstim-single8_S28_L003_R2_001.fastq.gz Unstim-single8_S28_L003_R2_001.fastq.gz ERR1797495 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797495/ERR1797495_2.fastq.gz 298 150 immortal cell line cell none CL-Unstim 8 -CL-Unstim 8 ERS1505484 SAMEA50527168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 8 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 8 SAMEA50527168 sequencing assay ERX1861061 Unstim-single8_S28_L004_R1_001.fastq.gz Unstim-single8_S28_L004_R1_001.fastq.gz ERR1797496 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797496/ERR1797496_1.fastq.gz 162 82 immortal cell line cell none CL-Unstim 8 -CL-Unstim 8 ERS1505484 SAMEA50527168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 8 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 8 SAMEA50527168 sequencing assay ERX1861061 Unstim-single8_S28_L004_R2_001.fastq.gz Unstim-single8_S28_L004_R2_001.fastq.gz ERR1797496 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797496/ERR1797496_2.fastq.gz 162 82 immortal cell line cell none CL-Unstim 8 -CL-Unstim 9 ERS1505485 SAMEA50527918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 9 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 9 SAMEA50527918 sequencing assay ERX1861062 Unstim-single9_S29_L001_R1_001.fastq.gz Unstim-single9_S29_L001_R1_001.fastq.gz ERR1797497 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797497/ERR1797497_1.fastq.gz 254 128 immortal cell line cell none CL-Unstim 9 -CL-Unstim 9 ERS1505485 SAMEA50527918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 9 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 9 SAMEA50527918 sequencing assay ERX1861062 Unstim-single9_S29_L001_R2_001.fastq.gz Unstim-single9_S29_L001_R2_001.fastq.gz ERR1797497 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797497/ERR1797497_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 9 -CL-Unstim 9 ERS1505485 SAMEA50527918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 9 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 9 SAMEA50527918 sequencing assay ERX1861062 Unstim-single9_S29_L002_R1_001.fastq.gz Unstim-single9_S29_L002_R1_001.fastq.gz ERR1797498 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797498/ERR1797498_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 9 -CL-Unstim 9 ERS1505485 SAMEA50527918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 9 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 9 SAMEA50527918 sequencing assay ERX1861062 Unstim-single9_S29_L002_R2_001.fastq.gz Unstim-single9_S29_L002_R2_001.fastq.gz ERR1797498 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797498/ERR1797498_2.fastq.gz 70 36 immortal cell line cell none CL-Unstim 9 -CL-Unstim 9 ERS1505485 SAMEA50527918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 9 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 9 SAMEA50527918 sequencing assay ERX1861062 Unstim-single9_S29_L003_R1_001.fastq.gz Unstim-single9_S29_L003_R1_001.fastq.gz ERR1797499 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797499/ERR1797499_1.fastq.gz 252 127 immortal cell line cell none CL-Unstim 9 -CL-Unstim 9 ERS1505485 SAMEA50527918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 9 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 9 SAMEA50527918 sequencing assay ERX1861062 Unstim-single9_S29_L003_R2_001.fastq.gz Unstim-single9_S29_L003_R2_001.fastq.gz ERR1797499 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797499/ERR1797499_2.fastq.gz 252 127 immortal cell line cell none CL-Unstim 9 -CL-Unstim 9 ERS1505485 SAMEA50527918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 9 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 9 SAMEA50527918 sequencing assay ERX1861062 Unstim-single9_S29_L004_R1_001.fastq.gz Unstim-single9_S29_L004_R1_001.fastq.gz ERR1797500 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797500/ERR1797500_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 9 -CL-Unstim 9 ERS1505485 SAMEA50527918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 9 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 9 SAMEA50527918 sequencing assay ERX1861062 Unstim-single9_S29_L004_R2_001.fastq.gz Unstim-single9_S29_L004_R2_001.fastq.gz ERR1797500 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797500/ERR1797500_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 9 -CL-Stim 19 ERS1505486 SAMEA50528668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 19 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 19 SAMEA50528668 sequencing assay ERX1861063 Stim-ten1_S19_L001_R1_001.fastq.gz Stim-ten1_S19_L001_R1_001.fastq.gz ERR1797501 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797501/ERR1797501_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 19 -CL-Stim 19 ERS1505486 SAMEA50528668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 19 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 19 SAMEA50528668 sequencing assay ERX1861063 Stim-ten1_S19_L001_R2_001.fastq.gz Stim-ten1_S19_L001_R2_001.fastq.gz ERR1797501 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797501/ERR1797501_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 19 -CL-Stim 19 ERS1505486 SAMEA50528668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 19 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 19 SAMEA50528668 sequencing assay ERX1861063 Stim-ten1_S19_L002_R1_001.fastq.gz Stim-ten1_S19_L002_R1_001.fastq.gz ERR1797502 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797502/ERR1797502_1.fastq.gz 154 78 immortal cell line cell CINGVCWTV peptide CL-Stim 19 -CL-Stim 19 ERS1505486 SAMEA50528668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 19 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 19 SAMEA50528668 sequencing assay ERX1861063 Stim-ten1_S19_L002_R2_001.fastq.gz Stim-ten1_S19_L002_R2_001.fastq.gz ERR1797502 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797502/ERR1797502_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 19 -CL-Stim 19 ERS1505486 SAMEA50528668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 19 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 19 SAMEA50528668 sequencing assay ERX1861063 Stim-ten1_S19_L003_R1_001.fastq.gz Stim-ten1_S19_L003_R1_001.fastq.gz ERR1797503 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797503/ERR1797503_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 19 -CL-Stim 19 ERS1505486 SAMEA50528668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 19 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 19 SAMEA50528668 sequencing assay ERX1861063 Stim-ten1_S19_L003_R2_001.fastq.gz Stim-ten1_S19_L003_R2_001.fastq.gz ERR1797503 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797503/ERR1797503_2.fastq.gz 300 151 immortal cell line cell CINGVCWTV peptide CL-Stim 19 -CL-Stim 19 ERS1505486 SAMEA50528668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 19 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 19 SAMEA50528668 sequencing assay ERX1861063 Stim-ten1_S19_L004_R1_001.fastq.gz Stim-ten1_S19_L004_R1_001.fastq.gz ERR1797504 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797504/ERR1797504_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 19 -CL-Stim 19 ERS1505486 SAMEA50528668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 19 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 19 SAMEA50528668 sequencing assay ERX1861063 Stim-ten1_S19_L004_R2_001.fastq.gz Stim-ten1_S19_L004_R2_001.fastq.gz ERR1797504 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797504/ERR1797504_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 19 -CL-Stim 20 ERS1505487 SAMEA50529418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 20 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 20 SAMEA50529418 sequencing assay ERX1861064 Stim-ten2_S20_L001_R1_001.fastq.gz Stim-ten2_S20_L001_R1_001.fastq.gz ERR1797505 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797505/ERR1797505_1.fastq.gz 282 142 immortal cell line cell CINGVCWTV peptide CL-Stim 20 -CL-Stim 20 ERS1505487 SAMEA50529418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 20 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 20 SAMEA50529418 sequencing assay ERX1861064 Stim-ten2_S20_L001_R2_001.fastq.gz Stim-ten2_S20_L001_R2_001.fastq.gz ERR1797505 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797505/ERR1797505_2.fastq.gz 70 36 immortal cell line cell CINGVCWTV peptide CL-Stim 20 -CL-Stim 20 ERS1505487 SAMEA50529418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 20 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 20 SAMEA50529418 sequencing assay ERX1861064 Stim-ten2_S20_L002_R1_001.fastq.gz Stim-ten2_S20_L002_R1_001.fastq.gz ERR1797506 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797506/ERR1797506_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 20 -CL-Stim 20 ERS1505487 SAMEA50529418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 20 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 20 SAMEA50529418 sequencing assay ERX1861064 Stim-ten2_S20_L002_R2_001.fastq.gz Stim-ten2_S20_L002_R2_001.fastq.gz ERR1797506 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797506/ERR1797506_2.fastq.gz 70 36 immortal cell line cell CINGVCWTV peptide CL-Stim 20 -CL-Stim 20 ERS1505487 SAMEA50529418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 20 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 20 SAMEA50529418 sequencing assay ERX1861064 Stim-ten2_S20_L003_R1_001.fastq.gz Stim-ten2_S20_L003_R1_001.fastq.gz ERR1797507 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797507/ERR1797507_1.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 20 -CL-Stim 20 ERS1505487 SAMEA50529418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 20 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 20 SAMEA50529418 sequencing assay ERX1861064 Stim-ten2_S20_L003_R2_001.fastq.gz Stim-ten2_S20_L003_R2_001.fastq.gz ERR1797507 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797507/ERR1797507_2.fastq.gz 302 152 immortal cell line cell CINGVCWTV peptide CL-Stim 20 -CL-Stim 20 ERS1505487 SAMEA50529418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 20 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 20 SAMEA50529418 sequencing assay ERX1861064 Stim-ten2_S20_L004_R1_001.fastq.gz Stim-ten2_S20_L004_R1_001.fastq.gz ERR1797508 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797508/ERR1797508_1.fastq.gz 160 81 immortal cell line cell CINGVCWTV peptide CL-Stim 20 -CL-Stim 20 ERS1505487 SAMEA50529418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 20 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 20 SAMEA50529418 sequencing assay ERX1861064 Stim-ten2_S20_L004_R2_001.fastq.gz Stim-ten2_S20_L004_R2_001.fastq.gz ERR1797508 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797508/ERR1797508_2.fastq.gz 160 81 immortal cell line cell CINGVCWTV peptide CL-Stim 20 -CL-Unstim 19 ERS1505488 SAMEA50530168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 19 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 19 SAMEA50530168 sequencing assay ERX1861065 Unstim-ten1_S39_L001_R1_001.fastq.gz Unstim-ten1_S39_L001_R1_001.fastq.gz ERR1797509 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797509/ERR1797509_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 19 -CL-Unstim 19 ERS1505488 SAMEA50530168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 19 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 19 SAMEA50530168 sequencing assay ERX1861065 Unstim-ten1_S39_L001_R2_001.fastq.gz Unstim-ten1_S39_L001_R2_001.fastq.gz ERR1797509 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797509/ERR1797509_2.fastq.gz 70 36 immortal cell line cell none CL-Unstim 19 -CL-Unstim 19 ERS1505488 SAMEA50530168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 19 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 19 SAMEA50530168 sequencing assay ERX1861065 Unstim-ten1_S39_L002_R1_001.fastq.gz Unstim-ten1_S39_L002_R1_001.fastq.gz ERR1797510 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797510/ERR1797510_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 19 -CL-Unstim 19 ERS1505488 SAMEA50530168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 19 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 19 SAMEA50530168 sequencing assay ERX1861065 Unstim-ten1_S39_L002_R2_001.fastq.gz Unstim-ten1_S39_L002_R2_001.fastq.gz ERR1797510 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797510/ERR1797510_2.fastq.gz 70 36 immortal cell line cell none CL-Unstim 19 -CL-Unstim 19 ERS1505488 SAMEA50530168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 19 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 19 SAMEA50530168 sequencing assay ERX1861065 Unstim-ten1_S39_L003_R1_001.fastq.gz Unstim-ten1_S39_L003_R1_001.fastq.gz ERR1797511 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797511/ERR1797511_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 19 -CL-Unstim 19 ERS1505488 SAMEA50530168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 19 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 19 SAMEA50530168 sequencing assay ERX1861065 Unstim-ten1_S39_L003_R2_001.fastq.gz Unstim-ten1_S39_L003_R2_001.fastq.gz ERR1797511 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797511/ERR1797511_2.fastq.gz 298 150 immortal cell line cell none CL-Unstim 19 -CL-Unstim 19 ERS1505488 SAMEA50530168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 19 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 19 SAMEA50530168 sequencing assay ERX1861065 Unstim-ten1_S39_L004_R1_001.fastq.gz Unstim-ten1_S39_L004_R1_001.fastq.gz ERR1797512 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797512/ERR1797512_1.fastq.gz 300 151 immortal cell line cell none CL-Unstim 19 -CL-Unstim 19 ERS1505488 SAMEA50530168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 19 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 19 SAMEA50530168 sequencing assay ERX1861065 Unstim-ten1_S39_L004_R2_001.fastq.gz Unstim-ten1_S39_L004_R2_001.fastq.gz ERR1797512 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797512/ERR1797512_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 19 -CL-Unstim 20 ERS1505489 SAMEA50530918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 20 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 20 SAMEA50530918 sequencing assay ERX1861066 Unstim-ten2_S40_L001_R1_001.fastq.gz Unstim-ten2_S40_L001_R1_001.fastq.gz ERR1797513 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797513/ERR1797513_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 20 -CL-Unstim 20 ERS1505489 SAMEA50530918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 20 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 20 SAMEA50530918 sequencing assay ERX1861066 Unstim-ten2_S40_L001_R2_001.fastq.gz Unstim-ten2_S40_L001_R2_001.fastq.gz ERR1797513 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797513/ERR1797513_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 20 -CL-Unstim 20 ERS1505489 SAMEA50530918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 20 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 20 SAMEA50530918 sequencing assay ERX1861066 Unstim-ten2_S40_L002_R1_001.fastq.gz Unstim-ten2_S40_L002_R1_001.fastq.gz ERR1797514 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797514/ERR1797514_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 20 -CL-Unstim 20 ERS1505489 SAMEA50530918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 20 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 20 SAMEA50530918 sequencing assay ERX1861066 Unstim-ten2_S40_L002_R2_001.fastq.gz Unstim-ten2_S40_L002_R2_001.fastq.gz ERR1797514 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797514/ERR1797514_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 20 -CL-Unstim 20 ERS1505489 SAMEA50530918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 20 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 20 SAMEA50530918 sequencing assay ERX1861066 Unstim-ten2_S40_L003_R1_001.fastq.gz Unstim-ten2_S40_L003_R1_001.fastq.gz ERR1797515 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797515/ERR1797515_1.fastq.gz 302 152 immortal cell line cell none CL-Unstim 20 -CL-Unstim 20 ERS1505489 SAMEA50530918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 20 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 20 SAMEA50530918 sequencing assay ERX1861066 Unstim-ten2_S40_L003_R2_001.fastq.gz Unstim-ten2_S40_L003_R2_001.fastq.gz ERR1797515 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797515/ERR1797515_2.fastq.gz 302 152 immortal cell line cell none CL-Unstim 20 -CL-Unstim 20 ERS1505489 SAMEA50530918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 20 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 20 SAMEA50530918 sequencing assay ERX1861066 Unstim-ten2_S40_L004_R1_001.fastq.gz Unstim-ten2_S40_L004_R1_001.fastq.gz ERR1797516 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797516/ERR1797516_1.fastq.gz 196 99 immortal cell line cell none CL-Unstim 20 -CL-Unstim 20 ERS1505489 SAMEA50530918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim 20 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 150 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim 20 SAMEA50530918 sequencing assay ERX1861066 Unstim-ten2_S40_L004_R2_001.fastq.gz Unstim-ten2_S40_L004_R2_001.fastq.gz ERR1797516 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797516/ERR1797516_2.fastq.gz 196 99 immortal cell line cell none CL-Unstim 20 -PB-T cell 21 ERS1505490 SAMEA50531668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 21 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 250 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 21 SAMEA50531668 sequencing assay ERX1861067 AE24_S3_L001_1.fastq.gz AE24_S3_L001_1.fastq.gz ERR1797517 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797517/ERR1797517_1.fastq.gz 134 68 primary cell none PB-T cell 21 -PB-T cell 21 ERS1505490 SAMEA50531668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 21 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 250 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 21 SAMEA50531668 sequencing assay ERX1861067 AE24_S3_L001_2.fastq.gz AE24_S3_L001_2.fastq.gz ERR1797517 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797517/ERR1797517_2.fastq.gz 422 212 primary cell none PB-T cell 21 -PB-T cell 22 ERS1505491 SAMEA50532418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 22 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 250 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 22 SAMEA50532418 sequencing assay ERX1861068 AE25_S4_L001_1.fastq.gz AE25_S4_L001_1.fastq.gz ERR1797518 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797518/ERR1797518_1.fastq.gz 142 72 primary cell none PB-T cell 22 -PB-T cell 22 ERS1505491 SAMEA50532418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 22 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 250 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 22 SAMEA50532418 sequencing assay ERX1861068 AE25_S4_L001_2.fastq.gz AE25_S4_L001_2.fastq.gz ERR1797518 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797518/ERR1797518_2.fastq.gz 386 194 primary cell none PB-T cell 22 -PB-T cell 23 ERS1505492 SAMEA50533168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 23 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 250 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 23 SAMEA50533168 sequencing assay ERX1861069 AE26_S5_L001_1.fastq.gz AE26_S5_L001_1.fastq.gz ERR1797519 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797519/ERR1797519_1.fastq.gz 144 73 primary cell none PB-T cell 23 -PB-T cell 23 ERS1505492 SAMEA50533168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 1 cell OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 23 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 250 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 23 SAMEA50533168 sequencing assay ERX1861069 AE26_S5_L001_2.fastq.gz AE26_S5_L001_2.fastq.gz ERR1797519 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797519/ERR1797519_2.fastq.gz 464 233 primary cell none PB-T cell 23 -PB-T cell 24 ERS1505493 SAMEA50533918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 10 cells not OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 24 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 250 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 24 SAMEA50533918 sequencing assay ERX1861070 AE27_S6_L001_1.fastq.gz AE27_S6_L001_1.fastq.gz ERR1797520 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797520/ERR1797520_1.fastq.gz 142 72 primary cell none PB-T cell 24 -PB-T cell 24 ERS1505493 SAMEA50533918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes primary cell 10 cells not OK cell P-MTAB-50508 P-MTAB-50510 PB-T cell 24 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 250 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti PB-T cell 24 SAMEA50533918 sequencing assay ERX1861070 AE27_S6_L001_2.fastq.gz AE27_S6_L001_2.fastq.gz ERR1797520 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797520/ERR1797520_2.fastq.gz 514 258 primary cell none PB-T cell 24 -CL-Stim 21 ERS1505494 SAMEA50534668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 21 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 250 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 21 SAMEA50534668 sequencing assay ERX1861071 AE20_S5_L001_1.fastq.gz AE20_S5_L001_1.fastq.gz ERR1797521 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797521/ERR1797521_1.fastq.gz 132 67 immortal cell line cell CINGVCWTV peptide CL-Stim 21 -CL-Stim 21 ERS1505494 SAMEA50534668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 21 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 250 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 21 SAMEA50534668 sequencing assay ERX1861071 AE20_S5_L001_2.fastq.gz AE20_S5_L001_2.fastq.gz ERR1797521 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797521/ERR1797521_2.fastq.gz 146 74 immortal cell line cell CINGVCWTV peptide CL-Stim 21 -CL-Stim 22 ERS1505495 SAMEA50535418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 22 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 250 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 22 SAMEA50535418 sequencing assay ERX1861072 AE21_S6_L001_1.fastq.gz AE21_S6_L001_1.fastq.gz ERR1797522 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797522/ERR1797522_1.fastq.gz 146 74 immortal cell line cell CINGVCWTV peptide CL-Stim 22 -CL-Stim 22 ERS1505495 SAMEA50535418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 22 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 250 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 22 SAMEA50535418 sequencing assay ERX1861072 AE21_S6_L001_2.fastq.gz AE21_S6_L001_2.fastq.gz ERR1797522 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797522/ERR1797522_2.fastq.gz 116 59 immortal cell line cell CINGVCWTV peptide CL-Stim 22 -CL-Stim 23 ERS1505496 SAMEA50536168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 23 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 250 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 23 SAMEA50536168 sequencing assay ERX1861073 AE22_S1_L001_1.fastq.gz AE22_S1_L001_1.fastq.gz ERR1797523 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797523/ERR1797523_1.fastq.gz 138 70 immortal cell line cell CINGVCWTV peptide CL-Stim 23 -CL-Stim 23 ERS1505496 SAMEA50536168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 23 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 250 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 23 SAMEA50536168 sequencing assay ERX1861073 AE22_S1_L001_2.fastq.gz AE22_S1_L001_2.fastq.gz ERR1797523 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/003/ERR1797523/ERR1797523_2.fastq.gz 212 107 immortal cell line cell CINGVCWTV peptide CL-Stim 23 -CL-Unstim21 ERS1505497 SAMEA50536918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim21 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 250 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim21 SAMEA50536918 sequencing assay ERX1861074 AE16_S1_L001_1.fastq.gz AE16_S1_L001_1.fastq.gz ERR1797524 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797524/ERR1797524_1.fastq.gz 152 77 immortal cell line cell none CL-Unstim21 -CL-Unstim21 ERS1505497 SAMEA50536918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim21 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 250 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim21 SAMEA50536918 sequencing assay ERX1861074 AE16_S1_L001_2.fastq.gz AE16_S1_L001_2.fastq.gz ERR1797524 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/004/ERR1797524/ERR1797524_2.fastq.gz 180 91 immortal cell line cell none CL-Unstim21 -CL-Unstim22 ERS1505498 SAMEA50537668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim22 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 250 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim22 SAMEA50537668 sequencing assay ERX1861075 AE17_S2_L001_1.fastq.gz AE17_S2_L001_1.fastq.gz ERR1797525 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797525/ERR1797525_1.fastq.gz 190 96 immortal cell line cell none CL-Unstim22 -CL-Unstim22 ERS1505498 SAMEA50537668 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim22 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 250 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim22 SAMEA50537668 sequencing assay ERX1861075 AE17_S2_L001_2.fastq.gz AE17_S2_L001_2.fastq.gz ERR1797525 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1797525/ERR1797525_2.fastq.gz 146 74 immortal cell line cell none CL-Unstim22 -CL-Unstim23 ERS1505499 SAMEA50538418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim23 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 250 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim23 SAMEA50538418 sequencing assay ERX1861076 AE18_S3_L001_1.fastq.gz AE18_S3_L001_1.fastq.gz ERR1797526 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797526/ERR1797526_1.fastq.gz 156 79 immortal cell line cell none CL-Unstim23 -CL-Unstim23 ERS1505499 SAMEA50538418 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 1 cell OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim23 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 250 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim23 SAMEA50538418 sequencing assay ERX1861076 AE18_S3_L001_2.fastq.gz AE18_S3_L001_2.fastq.gz ERR1797526 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1797526/ERR1797526_2.fastq.gz 114 58 immortal cell line cell none CL-Unstim23 -CL-Stim 24 ERS1505500 SAMEA50539168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 24 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 250 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 24 SAMEA50539168 sequencing assay ERX1861077 AE23_S2_L001_1.fastq.gz AE23_S2_L001_1.fastq.gz ERR1797527 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797527/ERR1797527_1.fastq.gz 140 71 immortal cell line cell CINGVCWTV peptide CL-Stim 24 -CL-Stim 24 ERS1505500 SAMEA50539168 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Stim 24 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 250 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Stim 24 SAMEA50539168 sequencing assay ERX1861077 AE23_S2_L001_2.fastq.gz AE23_S2_L001_2.fastq.gz ERR1797527 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/007/ERR1797527/ERR1797527_2.fastq.gz 364 183 immortal cell line cell CINGVCWTV peptide CL-Stim 24 -CL-Unstim24 ERS1505501 SAMEA50539918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim24 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 250 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim24 SAMEA50539918 sequencing assay ERX1861078 AE19_S4_L001_1.fastq.gz AE19_S4_L001_1.fastq.gz ERR1797528 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797528/ERR1797528_1.fastq.gz 172 87 immortal cell line cell none CL-Unstim24 -CL-Unstim24 ERS1505501 SAMEA50539918 Homo sapiens hepatitis C infection clearance 42 year male blood CD8-Positive T-Lymphocytes immortal cell line cell 10 cells not OK cell P-MTAB-50508 P-MTAB-51259 CL-Unstim24 PAIRED other TRANSCRIPTOMIC not applicable RNA-Seq 250 1 5'-3'-3'-5' FACS smart-seq2 polyA RNA oligo-dT none P-MTAB-50511 Ramaciotti CL-Unstim24 SAMEA50539918 sequencing assay ERX1861078 AE19_S4_L001_2.fastq.gz AE19_S4_L001_2.fastq.gz ERR1797528 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/008/ERR1797528/ERR1797528_2.fastq.gz 204 103 immortal cell line cell none CL-Unstim24