From ffd710311791cf5953de77b0872ce33199e39b2d Mon Sep 17 00:00:00 2001 From: anjaf Date: Fri, 14 Oct 2022 16:00:55 +0100 Subject: [PATCH] First part of curation Oct 2022 (#42) * initial single cell mappings * Retrofixes for failing mappings * Second batch single cell terms * Update 10x terms * tuft cell to brush cell mapping --- zoomage_report.CURATED.tsv | 127 ++++++++++++++++++++++++++++++++++--- 1 file changed, 118 insertions(+), 9 deletions(-) diff --git a/zoomage_report.CURATED.tsv b/zoomage_report.CURATED.tsv index 611386a..c3c58b0 100644 --- a/zoomage_report.CURATED.tsv +++ b/zoomage_report.CURATED.tsv @@ -55556,7 +55556,7 @@ disease coronary artery disease http://www.ebi.ac.uk/efo/EFO_0000378 E-GEOD-1207 disease diffuse intrinsic pontine glioma http://www.ebi.ac.uk/efo/EFO_1000026 E-MTAB-8243 ERR3477306 Nancy George 12/08/20 16:00 organism part epithelium of small intestine http://purl.obolibrary.org/obo/UBERON_0001902 E-MTAB-9077 ERR4159980 Nancy George 12/08/20 16:00 stimulus interleukin-17 (Mus musculus) http://www.ebi.ac.uk/efo/EFO_0003800 E-GEOD-19272 GSM478117 Nancy George 12/08/20 16:00 -disease intrahepatic cholestasis http://purl.obolibrary.org/obo/EFO_0009048 E-GEOD-46960 GSM1142118 Nancy George 12/08/20 16:00 +disease intrahepatic cholestasis http://purl.obolibrary.org/obo/MONDO_0019072 E-GEOD-46960 GSM1142118 Nancy George 12/08/20 16:00 disease kidney failure http://www.ebi.ac.uk/efo/EFO_1002048 E-GEOD-46474 GSM1130834 Nancy George 12/08/20 16:00 disease kidney failure http://www.ebi.ac.uk/efo/EFO_1002048 E-GEOD-48250 GSM1173325 Nancy George 12/08/20 16:00 disease Kidney Oncocytoma http://www.ebi.ac.uk/efo/EFO_1000315 E-GEOD-11151 GSM281337 Nancy George 12/08/20 16:00 @@ -55981,7 +55981,7 @@ cell line MOLT-3 http://www.ebi.ac.uk/efo/EFO_0005265 E-MTAB-2770 run_MOLT_3.1 A cell line MOLT-3 http://www.ebi.ac.uk/efo/EFO_0005265 E-MTAB-9250 MOLT-3-C1 Anja Fullgrabe 13/01/21 18:40 cell line NALM-1 http://www.ebi.ac.uk/efo/EFO_0002244 E-MTAB-2770 run_NALM_1.1 Anja Fullgrabe 13/01/21 18:40 cell line RPMI-2650 http://www.ebi.ac.uk/efo/EFO_0006478 E-MTAB-3983 ERR983911 Anja Fullgrabe 13/01/21 18:40 -cell line SBC-3 ttp://www.ebi.ac.uk/efo/EFO_0002854 E-MTAB-3983 ERR905179 Anja Fullgrabe 13/01/21 18:40 +cell line SBC-3 http://www.ebi.ac.uk/efo/EFO_0002854 E-MTAB-3983 ERR905179 Anja Fullgrabe 13/01/21 18:40 cell type CD8-positive T-Lymphocytes http://purl.obolibrary.org/obo/CL_0000625 E-GEOD-50119 GSM1214439 Anja Fullgrabe 13/01/21 18:40 cell type CD8-positive T-Lymphocytes http://purl.obolibrary.org/obo/CL_0000625 E-GEOD-50121 GSM1214463 Anja Fullgrabe 13/01/21 18:40 cell type CD8-Positive T-Lymphocytes http://purl.obolibrary.org/obo/CL_0000625 E-MEXP-3635 HCV-2 Anja Fullgrabe 13/01/21 18:40 @@ -56041,7 +56041,7 @@ developmental stage third instar larvae stage http://www.ebi.ac.uk/efo/EFO_00026 diet high-fat diet http://www.ebi.ac.uk/efo/EFO_0002757 E-MTAB-7755 HFD_104:biotin Anja Fullgrabe 13/01/21 18:40 disease Adenomyosis http://www.ebi.ac.uk/efo/EFO_1001757 E-GEOD-7307 GSM176257 Anja Fullgrabe 13/01/21 18:40 disease Anaplastic (Malignant) Meningioma http://www.ebi.ac.uk/efo/EFO_1000082 E-MTAB-4999 ctrl5 Anja Fullgrabe 13/01/21 18:40 -disease Biliary atresia http://www.orpha.net/ORDO/Orphanet_30391 E-GEOD-15235 GSM380382 Anja Fullgrabe 13/01/21 18:40 +disease Biliary atresia http://purl.obolibrary.org/obo/MONDO_0008867 E-GEOD-15235 GSM380382 Anja Fullgrabe 13/01/21 18:40 disease Corticobasal degeneration http://www.orpha.net/ORDO/Orphanet_278 E-PROT-58 ppb.iBAQ.UniPenn_Corticobasal.degeneration.2 Anja Fullgrabe 13/01/21 18:40 disease Genetic frontotemporal degeneration with dementia http://www.orpha.net/ORDO/Orphanet_276061 E-PROT-58 ppb.iBAQ.UniPenn_Frontotemporal.dementia.with.parkinsonism.linked.to.chromosome.17_2 Anja Fullgrabe 13/01/21 18:40 disease hepatitis http://purl.obolibrary.org/obo/HP_0012115 E-MTAB-5901 ERR2134061 Anja Fullgrabe 13/01/21 18:40 @@ -56124,7 +56124,7 @@ organism part cerebellar vermis http://purl.obolibrary.org/obo/UBERON_0004720 E- organism part deltoid http://purl.obolibrary.org/obo/UBERON_0001476 E-GEOD-7307 GSM176312 Anja Fullgrabe 13/01/21 18:40 organism part fat http://purl.obolibrary.org/obo/UBERON_0001013 E-GEOD-150316 SRR11772382 Anja Fullgrabe 13/01/21 18:40 organism part fundus of stomach http://purl.obolibrary.org/obo/UBERON_0001160 E-GEOD-7307 GSM176339 Anja Fullgrabe 13/01/21 18:40 -organism part inferior vagus X ganglion ttp://purl.obolibrary.org/obo/UBERON_0005363 E-GEOD-7307 GSM176348 Anja Fullgrabe 13/01/21 18:40 +organism part inferior vagus X ganglion http://purl.obolibrary.org/obo/UBERON_0005363 E-GEOD-7307 GSM176348 Anja Fullgrabe 13/01/21 18:40 organism part inferior vena cava http://purl.obolibrary.org/obo/UBERON_0001072 E-PROT-45 ppb.iBAQ.VCavaInf8 Anja Fullgrabe 13/01/21 18:40 organism part islets of langerhans http://purl.obolibrary.org/obo/UBERON_0000006 E-GEOD-53949 SRR1105569 Anja Fullgrabe 13/01/21 18:40 organism part lateral nuclear group of thalamus http://purl.obolibrary.org/obo/UBERON_0002736 E-GEOD-7307 GSM176454 Anja Fullgrabe 13/01/21 18:40 @@ -56776,11 +56776,11 @@ organism part seedling radicle http://purl.obolibrary.org/obo/PO_0025297 E-ENAD- organism part substania nigra http://purl.obolibrary.org/obo/UBERON_0002038 E-HCAD-25 SAMN13262707-ACGGAGATCTGGTGTA Natassja Bush 09/06/21 16:00 otto inferred developmental stage trophozoite stage http://www.ebi.ac.uk/efo/EFO_0002592 E-CURD-2 ERR1823265 Natassja Bush 09/06/21 16:00 phenotype CD11b positive http://purl.obolibrary.org/obo/CL_0002465 E-MTAB-6487 ERR3324528-TGGGCGTTCGAGGTAG Natassja Bush 09/06/21 16:00 -protocol 10x v2 http://www.ebi.ac.uk/efo/EFO_0009310 E-MTAB-8221 SAMEA6739635-GGGAATGTCCGAACGC Natassja Bush 09/06/21 16:00 -protocol 10xV2 http://www.ebi.ac.uk/efo/EFO_0009310 E-CURD-83 group1-CTGGTCTGTATCTGCA Natassja Bush 09/06/21 16:00 -protocol 10xV2 chemistry http://www.ebi.ac.uk/efo/EFO_0009310 E-CURD-46 SAMN12356581-CGATGTACACACGCTG Natassja Bush 09/06/21 16:00 -protocol 10x v3 http://www.ebi.ac.uk/efo/EFO_0009898 E-MTAB-8221 SAMEA6739630-GATCGCGAGTCGAGTG Natassja Bush 09/06/21 16:00 -protocol 10xV3 http://www.ebi.ac.uk/efo/EFO_0009898 E-CURD-83 SAMC200945-TTGGTTTAGGGTGAGG Natassja Bush 09/06/21 16:00 +protocol 10x v2 http://www.ebi.ac.uk/efo/EFO_0009899 E-MTAB-8221 SAMEA6739635-GGGAATGTCCGAACGC Natassja Bush 09/06/21 16:00 +protocol 10xV2 http://www.ebi.ac.uk/efo/EFO_0009899 E-CURD-83 group1-CTGGTCTGTATCTGCA Natassja Bush 09/06/21 16:00 +protocol 10xV2 chemistry http://www.ebi.ac.uk/efo/EFO_0009899 E-CURD-46 SAMN12356581-CGATGTACACACGCTG Natassja Bush 09/06/21 16:00 +protocol 10x v3 http://www.ebi.ac.uk/efo/EFO_0009922 E-MTAB-8221 SAMEA6739630-GATCGCGAGTCGAGTG Natassja Bush 09/06/21 16:00 +protocol 10xV3 http://www.ebi.ac.uk/efo/EFO_0009922 E-CURD-83 SAMC200945-TTGGTTTAGGGTGAGG Natassja Bush 09/06/21 16:00 protocol gene expression http://www.ebi.ac.uk/efo/EFO_0003788 E-CURD-79 ERR3804208-CTCTGGTTCTCGGACG Natassja Bush 09/06/21 16:00 protocol gene expression http://www.ebi.ac.uk/efo/EFO_0003788 E-CURD-80 ERR3804285-TATTGGGCATGGAAGC Natassja Bush 09/06/21 16:00 sampling site ascending aorta http://purl.obolibrary.org/obo/UBERON_0001496 E-HCAD-36 SRR12358192-CGTCACTTCGCATGAT Natassja Bush 09/06/21 16:00 @@ -58077,3 +58077,112 @@ inferred cell type - ontology labels epithelial cell of endometrial gland http:/ inferred cell type - ontology labels fused extravillous trophoblast http://purl.obolibrary.org/obo/CL_0009087 no_accession no_assay Silvie Fexova 06/10/22 12:15 inferred cell type - ontology labels endothelial cell of uterus http://purl.obolibrary.org/obo/CL_0009095 no_accession no_assay Silvie Fexova 06/10/22 12:15 inferred cell type - ontology labels endothelial cell of placenta http://purl.obolibrary.org/obo/CL_0009092 no_accession no_assay Silvie Fexova 06/10/22 12:15 +inferred cell type - authors labels ILC3 http://purl.obolibrary.org/obo/CL_0001071 E-CURD-46 SAMN12356568-GATCAGTGTCTAGGTT Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels activated CD8-positive, alpha-beta T cell http://purl.obolibrary.org/obo/CL_0000906 E-CURD-46 SAMN12356574-ACGTCAATCGGTCCGA Anja Fullgrabe 13/10/22 11:30 +organism part ascending colon http://purl.obolibrary.org/obo/UBERON_0001156 E-MTAB-8410 SAMEA6057411-TCGTACCCACGGTAAG Anja Fullgrabe 13/10/22 11:30 +organism part caecum http://purl.obolibrary.org/obo/UBERON_0001153 E-MTAB-8410 SAMEA6057389-GTCTTCGCAATAGCAA Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels CD8-positive, alpha-beta cytotoxic T cell http://purl.obolibrary.org/obo/CL_0000794 E-CURD-46 SAMN12356581-GCAAACTGTGCCTGCA Anja Fullgrabe 13/10/22 11:30 +organism part colon http://purl.obolibrary.org/obo/UBERON_0001155 E-GEOD-125970 SRR8513797-TGGTTCCGTACAGTGG Anja Fullgrabe 13/10/22 11:30 +organism part colon http://purl.obolibrary.org/obo/UBERON_0001155 E-MTAB-8410 SAMEA6057400-AAAGATGAGGTGCTAG Anja Fullgrabe 13/10/22 11:30 +inferred cell type - authors labels cytotoxic T cell http://purl.obolibrary.org/obo/CL_0000910 E-CURD-46 SAMN12356575-GCATGCGAGGCTATCT Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels cytotoxic T cell http://purl.obolibrary.org/obo/CL_0000910 E-CURD-46 SAMN12356574-CGATCGGGTCCGTGAC Anja Fullgrabe 13/10/22 11:30 +inferred cell type - authors labels enterocyte http://purl.obolibrary.org/obo/CL_0000584 E-GEOD-125970 SRR8513794-GGCGACTTCAGCTCTC Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels goblet cell http://purl.obolibrary.org/obo/CL_0000160 E-MTAB-8410 SAMEA6057390-CACACTCAGCCCTAAT Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels group 1 innate lymphoid cell http://purl.obolibrary.org/obo/CL_0001067 E-CURD-46 SAMN12356583-CTCATTAGTAGCTTGT Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels group 3 innate lymphoid cell http://purl.obolibrary.org/obo/CL_0001071 E-CURD-46 SAMN12356569-CCACCTAAGTGTTAGA Anja Fullgrabe 13/10/22 11:30 +inferred cell type - authors labels IgA plasma cell http://purl.obolibrary.org/obo/CL_0000987 E-CURD-46 SAMN12356568-AATCCAGTCGATGAGG Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels IgA plasma cell http://purl.obolibrary.org/obo/CL_0000987 E-CURD-46 SAMN12356574-CCGGTAGGTCGCATAT Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels IgA plasma cell http://purl.obolibrary.org/obo/CL_0000987 E-MTAB-8410 SAMEA6057391-TGACAACCAATGGAGC Anja Fullgrabe 13/10/22 11:30 +inferred cell type - authors labels IgG plasma cell http://purl.obolibrary.org/obo/CL_0000985 E-CURD-46 SAMN12356575-CTCGGGAGTAGAGCTG Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels IgG plasma cell http://purl.obolibrary.org/obo/CL_0000985 E-CURD-46 SAMN12356578-GTCGGGTAGACGCTTT Anja Fullgrabe 13/10/22 11:30 +inferred cell type - authors labels IgM plasma cell http://purl.obolibrary.org/obo/CL_0000986 E-CURD-46 SAMN12356589-CTACGTCGTACTCTCC Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels IgM plasma cell http://purl.obolibrary.org/obo/CL_0000986 E-CURD-46 SAMN12356572-TGCGGGTCATGACGGA Anja Fullgrabe 13/10/22 11:30 +organism part ileum http://purl.obolibrary.org/obo/UBERON_0002116 E-GEOD-125970 SRR8513794-GCATGCGGTAGCGCAA Anja Fullgrabe 13/10/22 11:30 +cell type intestinal epithelial cell http://purl.obolibrary.org/obo/CL_0002563 E-GEOD-125970 SRR8513799-CCCAGTTCACTTCGAA Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels mature conventional dendritic cell http://purl.obolibrary.org/obo/CL_0000841 E-CURD-46 SAMN12356578-GTCTTCGAGTCAAGGC Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels memory T cell http://purl.obolibrary.org/obo/CL_0000813 E-CURD-46 SAMN12356587-CTACATTCAGGTTTCA Anja Fullgrabe 13/10/22 11:30 +organism part rectum http://purl.obolibrary.org/obo/UBERON_0001052 E-GEOD-125970 SRR8513799-TCCCGATAGGATGGTC Anja Fullgrabe 13/10/22 11:30 +inferred cell type - authors labels T follicular helper cell http://purl.obolibrary.org/obo/CL_0002038 E-MTAB-8410 SAMEA6057405-GCTGGGTGTGACAAAT Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels T follicular helper cell http://purl.obolibrary.org/obo/CL_0002038 E-MTAB-8410 SAMEA6057392-GCGCAGTGTCTAGTGT Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels tissue-resident macrophage http://purl.obolibrary.org/obo/CL_0000864 E-CURD-46 SAMN12356588-GACACGCAGGGAGTAA Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels anorectum goblet cell http://purl.obolibrary.org/obo/CL_0009057 E-GEOD-125970 SRR8513798-GGACAGAGTATATGGA Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels CD4-positive, alpha-beta T cell http://purl.obolibrary.org/obo/CL_0000624 E-MTAB-8410 SAMEA6057391-ACGGGTCTCCACGCAG Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels CD8-positive, alpha-beta memory T cell http://purl.obolibrary.org/obo/CL_0000909 E-CURD-46 SAMN12356569-TTAGTTCGTTTGGCGC Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels CD8-positive, alpha-beta T cell http://purl.obolibrary.org/obo/CL_0000625 E-MTAB-8410 SAMEA6057414-CGGACACCACTTGGAT Anja Fullgrabe 13/10/22 11:30 +inferred cell type - authors labels DC1 http://purl.obolibrary.org/obo/CL_0000990 E-CURD-46 SAMN12356586-GCAATCAAGCTTTGGT Anja Fullgrabe 13/10/22 11:30 +inferred cell type - authors labels DC2 http://purl.obolibrary.org/obo/CL_0000784 E-CURD-46 SAMN12356586-TAGAGCTCAGCTGCTG Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels endothelial cell of lymphatic vessel http://purl.obolibrary.org/obo/CL_0002138 E-MTAB-8410 SAMEA6057403-CTCTACGAGGGTTCCC Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels endothelial stalk cell http://purl.obolibrary.org/obo/CL_0002671 E-MTAB-8410 SAMEA6057403-TCGGGACCATGGTTGT Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels endothelial tip cell http://purl.obolibrary.org/obo/CL_0000704 E-MTAB-8410 SAMEA6057389-CCCATACAGTTATCGC Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels enterocyte of anorectum http://purl.obolibrary.org/obo/CL_0009058 E-GEOD-125970 SRR8513799-CGTGAGCTCGAACTGT Anja Fullgrabe 13/10/22 11:30 +inferred cell type - authors labels enterocyte of colon http://purl.obolibrary.org/obo/CL_1000347 E-MTAB-8410 SAMEA6057393-CATCAAGCAAGCGAGT Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels enterocyte of colon http://purl.obolibrary.org/obo/CL_1000347 E-GEOD-125970 SRR8513797-AACCGCGAGAGCTATA Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels enterocyte of epithelium of large intestine http://purl.obolibrary.org/obo/CL_0002071 E-MTAB-8410 SAMEA6057414-AAAGATGCAATTGCTG Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels enterocyte of epithelium of small intestine http://purl.obolibrary.org/obo/CL_1000334 E-GEOD-125970 SRR8513794-GCCTCTAGTCATCGGC Anja Fullgrabe 13/10/22 11:30 +inferred cell type - authors labels enteroendocrine cell http://purl.obolibrary.org/obo/CL_0000164 E-GEOD-125970 SRR8513798-CGATCGGCAGATAATG Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels enteroendocrine cell of anorectum http://purl.obolibrary.org/obo/CL_0009063 E-GEOD-125970 SRR8513799-TCATTTGTCTATGTGG Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels enteroendocrine cell of colon http://purl.obolibrary.org/obo/CL_0009042 E-GEOD-125970 SRR8513797-GTAGGCCTCACCGGGT Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels enteroendocrine cell of small intestine http://purl.obolibrary.org/obo/CL_0009006 E-GEOD-125970 SRR8513795-GGCGACTCAACGATCT Anja Fullgrabe 13/10/22 11:30 +inferred cell type - authors labels goblet http://purl.obolibrary.org/obo/CL_0000160 E-GEOD-125970 SRR8513798-AAACCTGAGATCGATA Anja Fullgrabe 13/10/22 11:30 +inferred cell type - authors labels goblet cell of colon http://purl.obolibrary.org/obo/CL_0009039 E-MTAB-8410 SAMEA6057396-TACGGTACAACACGCC Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels goblet cell of colon http://purl.obolibrary.org/obo/CL_0009039 E-GEOD-125970 SRR8513796-ATTCTACCAACACCCG Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels gut endothelial cell http://purl.obolibrary.org/obo/CL_0000131 E-CURD-46 SAMN12356581-TTGCCGTTCCAAATGC Anja Fullgrabe 13/10/22 11:30 +inferred cell type - authors labels IgA+ plasma cell http://purl.obolibrary.org/obo/CL_0000987 E-MTAB-8410 SAMEA6057393-CTGTGCTAGGATGGAA Anja Fullgrabe 13/10/22 11:30 +organism part ileal mucosa http://purl.obolibrary.org/obo/UBERON_0000331 E-CURD-46 SAMN12356571-AGATTGCTCACCCTCA Anja Fullgrabe 13/10/22 11:30 +inferred cell type - authors labels inflammatory macrophage http://purl.obolibrary.org/obo/CL_0000863 E-CURD-46 SAMN12356581-ATCTACTAGGCCATAG Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels inflammatory macrophage http://purl.obolibrary.org/obo/CL_0000863 E-CURD-46 SAMN12356581-AGCTTGATCACGCATA Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels intestinal crypt stem cell of anorectum http://purl.obolibrary.org/obo/CL_0009061 E-GEOD-125970 SRR8513798-CGCGTTTCACTATCTT Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels intestinal crypt stem cell of colon http://purl.obolibrary.org/obo/CL_0009043 E-GEOD-125970 SRR8513796-ATCATCTGTCTGCAAT Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels intestinal crypt stem cell of small intestine http://purl.obolibrary.org/obo/CL_0009017 E-GEOD-125970 SRR8513795-GGTATTGCAGCTCGCA Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels myeloid cell http://purl.obolibrary.org/obo/CL_0000763 E-MTAB-8410 SAMEA6057393-CCATGTCAGTCTCCTC Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels myeloid dendritic cell http://purl.obolibrary.org/obo/CL_0000782 E-CURD-46 SAMN12356577-ACTTACTTCGCGGATC Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels paneth cell of anorectum http://purl.obolibrary.org/obo/CL_0009055 E-GEOD-125970 SRR8513799-GGGAATGGTTATTCTC Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels paneth cell of colon http://purl.obolibrary.org/obo/CL_0009009 E-GEOD-125970 SRR8513797-GCATGCGCATGCGCAC Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels paneth cell of epithelium of small intestine http://purl.obolibrary.org/obo/CL_1000343 E-GEOD-125970 SRR8513795-CTGATCCCAATAGCGG Anja Fullgrabe 13/10/22 11:30 +inferred cell type - authors labels pDC http://purl.obolibrary.org/obo/CL_0000784 E-CURD-46 SAMN12356581-GATTCAGGTCGGGTCT Anja Fullgrabe 13/10/22 11:30 +inferred cell type - authors labels pericyte http://purl.obolibrary.org/obo/CL_0000669 E-MTAB-8410 SAMEA6057403-TCACAAGAGAGCTATA Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels pericyte http://purl.obolibrary.org/obo/CL_0000669 E-MTAB-8410 SAMEA6057389-GTCTTCGGTGCGGTAA Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels pericyte cell http://purl.obolibrary.org/obo/CL_0000669 E-CURD-46 SAMN12356587-CAACTAGAGGACGAAA Anja Fullgrabe 13/10/22 11:30 +inferred cell type - authors labels Pericytes http://purl.obolibrary.org/obo/CL_0000669 E-CURD-46 SAMN12356569-TAAGCGTGTTACCGAT Anja Fullgrabe 13/10/22 11:30 +inferred cell type - authors labels progenitor http://purl.obolibrary.org/obo/CL_0011026 E-GEOD-125970 SRR8513795-CAGATCAAGACACTAA Anja Fullgrabe 13/10/22 11:30 +organism part rectosigmoid junction http://purl.obolibrary.org/obo/UBERON_0036214 E-MTAB-8410 SAMEA6057393-AAACCTGCATTAACCG Anja Fullgrabe 13/10/22 11:30 +inferred cell type - authors labels resident macrophage http://purl.obolibrary.org/obo/CL_0000864 E-CURD-46 SAMN12356569-TACTTGTCATCGGGTC Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels small intestine goblet cell http://purl.obolibrary.org/obo/CL_1000495 E-GEOD-125970 SRR8513794-CCGTACTTCCCTTGTG Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels smooth muscle cell of large intestine http://purl.obolibrary.org/obo/CL_1000279 E-MTAB-8410 SAMEA6057411-TTTATGCCACGGTGTC Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels smooth muscle cell of small intestine http://purl.obolibrary.org/obo/CL_1000275 E-CURD-46 SAMN12356579-AGGCCGTCACGGATAG Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels stromal cell of lamina propria of colon http://purl.obolibrary.org/obo/CL_0009040 E-MTAB-8410 SAMEA6057390-GGGAGATGTTCCACGG Anja Fullgrabe 13/10/22 11:30 +inferred cell type - authors labels transit amplifying cell http://purl.obolibrary.org/obo/CL_0009010 E-GEOD-125970 SRR8513795-TGAGGGATCCGGCACA Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels transit amplifying cell of anorectum http://purl.obolibrary.org/obo/CL_0009056 E-GEOD-125970 SRR8513798-AATCGGTGTCCGAATT Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels transit amplifying cell of colon http://purl.obolibrary.org/obo/CL_0009011 E-GEOD-125970 SRR8513796-CCTCTGAGTTAAGTAG Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels transit amplifying cell of small intestine http://purl.obolibrary.org/obo/CL_0009012 E-GEOD-125970 SRR8513795-GGAAAGCAGGCCCTTG Anja Fullgrabe 13/10/22 11:30 +inferred cell type - authors labels tuft cell http://purl.obolibrary.org/obo/CL_0002204 E-MTAB-8410 SAMEA6057393-CACCACTAGGGTATCG Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels tuft cell of colon http://purl.obolibrary.org/obo/CL_0009041 E-MTAB-8410 SAMEA6057393-CACCACTAGGGTATCG Anja Fullgrabe 13/10/22 11:30 +protocol 10xV2 chemistry http://www.ebi.ac.uk/efo/EFO_0009899 E-CURD-46 SAMN12356580-CGGTTAATCTGTACGA Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels myofibroblast http://purl.obolibrary.org/obo/CL_0000186 E-MTAB-8410 SAMEA6057395-CGCGGTAGTAAATGAC Anja Fullgrabe 13/10/22 11:30 +inferred cell type - authors labels myofibroblast http://purl.obolibrary.org/obo/CL_0000186 E-MTAB-8410 SAMEA6057391-CAGATCAGTGCTTCTC Anja Fullgrabe 13/10/22 11:30 +inferred cell type - authors labels Tregs http://purl.obolibrary.org/obo/CL_0000815 E-CURD-46 SAMN12356572-TGGCTGGTCAGCGACC Anja Fullgrabe 13/10/22 11:30 +inferred cell type - authors labels ILC1 http://purl.obolibrary.org/obo/CL_0001068 E-CURD-46 SAMN12356573-AAAGCAACAGTATCTG Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels basal cell of epidermis http://purl.obolibrary.org/obo/CL_0002187 E-ENAD-15 group19842 Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels bladder cell http://purl.obolibrary.org/obo/CL_1001319 E-ENAD-15 group18918 Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels bladder urothelial cell http://purl.obolibrary.org/obo/CL_1001428 E-ENAD-15 SRR6520413 Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels brain pericyte http://purl.obolibrary.org/obo/CL_2000043 E-ENAD-15 group14725 Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels cardiac neuron http://purl.obolibrary.org/obo/CL_0010022 E-ENAD-15 group3409 Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels ciliated columnar cell of tracheobronchial tree http://purl.obolibrary.org/obo/CL_0002145 E-ENAD-15 group16231 Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels DN1 thymic pro-T cell http://purl.obolibrary.org/obo/CL_0000894 E-ENAD-15 group28965 Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels epithelial cell of lung http://purl.obolibrary.org/obo/CL_0000082 E-ENAD-15 group45363 Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels immature natural killer cell http://purl.obolibrary.org/obo/CL_0000823 E-ENAD-15 SRR6586247 Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels immature NK T cell http://purl.obolibrary.org/obo/CL_0000914 E-ENAD-15 group41543 Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels immature T cell http://purl.obolibrary.org/obo/CL_0002420 E-ENAD-15 group16929 Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels keratinocyte stem cell http://purl.obolibrary.org/obo/CL_0002337 E-ENAD-15 group26162 Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels kidney collecting duct epithelial cell http://purl.obolibrary.org/obo/CL_1000454 E-ENAD-15 group26857 Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels late pro-B cell http://purl.obolibrary.org/obo/CL_0002048 E-ENAD-15 group23987 Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels mature natural killer cell http://purl.obolibrary.org/obo/CL_0000824 E-ENAD-15 SRR6595598 Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels pre-natural killer cell http://purl.obolibrary.org/obo/CL_0000937 E-ENAD-15 SRR6586281 Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels skeletal muscle satellite stem cell http://purl.obolibrary.org/obo/CL_0008011 E-ENAD-15 group6520 Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels Slamf1-negative multipotent progenitor cell http://purl.obolibrary.org/obo/CL_0002035 E-ENAD-15 group33431 Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels Slamf1-positive multipotent progenitor cell http://purl.obolibrary.org/obo/CL_0002036 E-ENAD-15 group24935 Anja Fullgrabe 13/10/22 11:30 +inferred cell type - ontology labels stem cell of epidermis http://purl.obolibrary.org/obo/CL_1000428 E-ENAD-15 group29658 Anja Fullgrabe 13/10/22 11:30 +organism part brachial lymph node http://purl.obolibrary.org/obo/UBERON_0002525 E-CURD-96 ERR2142646 Anja Fullgrabe 13/10/22 11:30 +organism part exocrine pancreas http://purl.obolibrary.org/obo/UBERON_0000017 E-ENAD-15 group1923 Anja Fullgrabe 13/10/22 11:30 +organism part heart left atrium http://purl.obolibrary.org/obo/UBERON_0002079 E-ENAD-15 group31134 Anja Fullgrabe 13/10/22 11:30 +organism part heart right atrium http://purl.obolibrary.org/obo/UBERON_0002078 E-ENAD-15 group38433 Anja Fullgrabe 13/10/22 11:30