diff --git a/app/build.gradle b/app/build.gradle index 2868e2f7..35eab5eb 100644 --- a/app/build.gradle +++ b/app/build.gradle @@ -27,10 +27,10 @@ def cache2kVersion = '1.2.4.Final' dependencies { implementation project(':atlas-web-core') - implementation 'org.springframework:spring-context:5.1.5.RELEASE' - implementation 'org.springframework:spring-web:5.1.5.RELEASE' - implementation 'org.springframework:spring-jdbc:5.1.5.RELEASE' - implementation 'org.springframework:spring-webmvc:5.1.5.RELEASE' + implementation 'org.springframework:spring-context:5.3.26' + implementation 'org.springframework:spring-web:5.3.26' + implementation 'org.springframework:spring-jdbc:5.3.26' + implementation 'org.springframework:spring-webmvc:5.3.26' implementation 'javax.validation:validation-api:2.0.1.Final' implementation 'commons-net:commons-net:3.8.0' diff --git a/app/src/main/javascript/modules/experiments-summary-panel b/app/src/main/javascript/modules/experiments-summary-panel index dec725bb..d88ce03c 160000 --- a/app/src/main/javascript/modules/experiments-summary-panel +++ b/app/src/main/javascript/modules/experiments-summary-panel @@ -1 +1 @@ -Subproject commit dec725bb9e336b90aeb4e459b9891f9a14fd7a73 +Subproject commit d88ce03cde100799d8f7a0d17cac67538aa1d13f diff --git a/app/src/main/javascript/modules/species-summary-panel b/app/src/main/javascript/modules/species-summary-panel index bd3b944e..b9edbdbb 160000 --- a/app/src/main/javascript/modules/species-summary-panel +++ b/app/src/main/javascript/modules/species-summary-panel @@ -1 +1 @@ -Subproject commit bd3b944e91e75600889f14e71a152aca2e9a91fb +Subproject commit b9edbdbbcc661cc30d147818e8529f339f597f19 diff --git a/app/src/test/java/uk/ac/ebi/atlas/sitemaps/SitemapWriterIT.java b/app/src/test/java/uk/ac/ebi/atlas/sitemaps/SitemapWriterIT.java index 3ec61908..0ec4d903 100644 --- a/app/src/test/java/uk/ac/ebi/atlas/sitemaps/SitemapWriterIT.java +++ b/app/src/test/java/uk/ac/ebi/atlas/sitemaps/SitemapWriterIT.java @@ -51,7 +51,7 @@ void producesValidXmlForMainSitemapOfSitemaps() throws Exception { var baos = new ByteArrayOutputStream(); SitemapWriter.writeSitemapIndex(baos, randomSubsetOfSpecies); - assertThat(parseXml(baos).getDocumentElement()).hasFieldOrPropertyWithValue("tagName", "sitemapindex"); + assertThat(parseXml(baos).getDocumentElement().getTagName()).isEqualTo("sitemapindex"); } @Test @@ -59,7 +59,7 @@ void producesValidXmlForExperiments() throws Exception { var baos = new ByteArrayOutputStream(); SitemapWriter.writeExperimentsSitemap(baos); - assertThat(parseXml(baos).getDocumentElement()).hasFieldOrPropertyWithValue("tagName", "urlset"); + assertThat(parseXml(baos).getDocumentElement().getTagName()).isEqualTo("urlset"); } @Test @@ -83,7 +83,7 @@ void producesValidXmlForBioentityIdentifiers() throws Exception { var baos = new ByteArrayOutputStream(); SitemapWriter.writeBioentityIdentifiersSitemap(baos, ImmutableList.of(), true); - assertThat(parseXml(baos).getDocumentElement()).hasFieldOrPropertyWithValue("tagName", "urlset"); + assertThat(parseXml(baos).getDocumentElement().getTagName()).isEqualTo( "urlset"); } private Document parseXml(final ByteArrayOutputStream outputStream) throws Exception { diff --git a/buildSrc/src/main/groovy/atlas-web-app.java-conventions.gradle b/buildSrc/src/main/groovy/atlas-web-app.java-conventions.gradle index aafd45fb..ed5ddb60 100644 --- a/buildSrc/src/main/groovy/atlas-web-app.java-conventions.gradle +++ b/buildSrc/src/main/groovy/atlas-web-app.java-conventions.gradle @@ -6,8 +6,8 @@ plugins { group = 'uk.ac.ebi.ge' version = '1.0.0' -sourceCompatibility = 11 -targetCompatibility = 11 +sourceCompatibility = 17 +targetCompatibility = 17 repositories { mavenCentral() @@ -61,7 +61,7 @@ dependencies { exclude group: 'org.apache.logging.log4j', module: 'log4j-slf4j-impl' } - testImplementation 'org.springframework:spring-test:5.1.5.RELEASE' + testImplementation 'org.springframework:spring-test:5.3.26' testImplementation 'com.h2database:h2:1.4.199' testImplementation 'org.junit.jupiter:junit-jupiter-params:5.4.1' testImplementation 'org.mockito:mockito-core:5.2.0' diff --git a/docker/docker-compose-gradle-test.yml b/docker/docker-compose-gradle-test.yml index 10e1383d..ef970436 100644 --- a/docker/docker-compose-gradle-test.yml +++ b/docker/docker-compose-gradle-test.yml @@ -2,7 +2,7 @@ version: "3.6" services: gxa-gradle: - image: gradle:7.0-jdk11 + image: gradle:7.6.4-jdk17 networks: - atlas-test-net ports: diff --git a/docker/docker-compose-gradle.yml b/docker/docker-compose-gradle.yml index 14ca342b..5469fd0b 100644 --- a/docker/docker-compose-gradle.yml +++ b/docker/docker-compose-gradle.yml @@ -2,7 +2,7 @@ version: "3.6" services: gxa-gradle: - image: gradle:7.0-jdk11 + image: gradle:7.6.4-jdk17 networks: - atlas-test-net volumes: diff --git a/docker/docker-compose-tomcat.yml b/docker/docker-compose-tomcat.yml index ce903f6a..bf4075ac 100644 --- a/docker/docker-compose-tomcat.yml +++ b/docker/docker-compose-tomcat.yml @@ -2,7 +2,7 @@ version: "3.6" services: gxa-tomcat: - image: tomcat:9-jdk11 + image: tomcat:9-jdk17 container_name: gxa-tomcat networks: - atlas-test-net diff --git a/schemas b/schemas index 56afadf5..80545112 160000 --- a/schemas +++ b/schemas @@ -1 +1 @@ -Subproject commit 56afadf592494610080ec7854cde34d18443c434 +Subproject commit 80545112bf373ccacfe46a53787aa07a4ef0b971