diff --git a/chemicals/jsonld-contexts/chemicals-compound.jsonld b/chemicals/jsonld-contexts/chemicals-compound.jsonld new file mode 100644 index 0000000..8d56faa --- /dev/null +++ b/chemicals/jsonld-contexts/chemicals-compound.jsonld @@ -0,0 +1,6 @@ +{ + "@context": [ + "https://easy-global-market.github.io/ngsild-api-data-models/chemicals/jsonld-contexts/chemicals.jsonld", + "https://easy-global-market.github.io/ngsild-api-data-models/twinPicks/jsonld-contexts/twinPicks-compound.jsonld" + ] +} diff --git a/chemicals/jsonld-contexts/chemicals.jsonld b/chemicals/jsonld-contexts/chemicals.jsonld new file mode 100644 index 0000000..e630bd8 --- /dev/null +++ b/chemicals/jsonld-contexts/chemicals.jsonld @@ -0,0 +1,109 @@ +{ + "@context": { + "LaboratoryResults": "https://vocab.egm.io/LaboratoryResults", + "aluminium": "https://vocab.egm.io/aluminium", + "ammoniaAndAmmoniumIonsAsN": "https://vocab.egm.io/ammoniaAndAmmoniumIonsAsN", + "ammoniaAndAmmoniumIonsAsNh4": "https://vocab.egm.io/ammoniaAndAmmoniumIonsAsNh4", + "anastrozole": "https://vocab.egm.io/anastrozole", + "antimony": "https://vocab.egm.io/antimony", + "arsenic": "https://vocab.egm.io/arsenic", + "atenolol": "https://vocab.egm.io/atenolol", + "azathioprine": "https://vocab.egm.io/azathioprine", + "barium": "https://vocab.egm.io/barium", + "beryllium": "https://vocab.egm.io/beryllium", + "bezafibrate": "https://vocab.egm.io/bezafibrate", + "boron": "https://vocab.egm.io/boron", + "buprenorphine": "https://vocab.egm.io/buprenorphine", + "butorphanol": "https://vocab.egm.io/butorphanol", + "cadmium": "https://vocab.egm.io/cadmium", + "caffeine": "https://vocab.egm.io/caffeine", + "calcium": "https://vocab.egm.io/calcium", + "capecitabine": "https://vocab.egm.io/capecitabine", + "carbamazepine": "https://vocab.egm.io/carbamazepine", + "chloramphenicol": "https://vocab.egm.io/chloramphenicol", + "chloride": "https://vocab.egm.io/chloride", + "chromium": "https://vocab.egm.io/chromium", + "ciprofloxacin": "https://vocab.egm.io/ciprofloxacin", + "citalopram": "https://vocab.egm.io/citalopram", + "clientSampleNo": "https://vocab.egm.io/clientSampleNo", + "clofibricAcid": "https://vocab.egm.io/clofibricAcid", + "cobalt": "https://vocab.egm.io/cobalt", + "copper": "https://vocab.egm.io/copper", + "cyclobenzaprine": "https://vocab.egm.io/cyclobenzaprine", + "cyclophosphamide": "https://vocab.egm.io/cyclophosphamide", + "diazepam": "https://vocab.egm.io/diazepam", + "diclofenac": "https://vocab.egm.io/diclofenac", + "dissolvedO2": "https://vocab.egm.io/dissolvedO2", + "ec": "https://vocab.egm.io/ec", + "eh": "https://vocab.egm.io/eh", + "enalapril": "https://vocab.egm.io/enalapril", + "fluoxetine": "https://vocab.egm.io/fluoxetine", + "flutamide": "https://vocab.egm.io/flutamide", + "furosemide": "https://vocab.egm.io/furosemide", + "gabapentin": "https://vocab.egm.io/gabapentin", + "gemfibrozil": "https://vocab.egm.io/gemfibrozil", + "gwDepth": "https://vocab.egm.io/gwDepth", + "hydrochlorothiazide": "https://vocab.egm.io/hydrochlorothiazide", + "ifosfamide": "https://vocab.egm.io/ifosfamide", + "indomethacin": "https://vocab.egm.io/indomethacin", + "iohexol": "https://vocab.egm.io/iohexol", + "iomeprol": "https://vocab.egm.io/iomeprol", + "iopamidol": "https://vocab.egm.io/iopamidol", + "iopromide": "https://vocab.egm.io/iopromide", + "iron": "https://vocab.egm.io/iron", + "ketoprofen": "https://vocab.egm.io/ketoprofen", + "labSampleNo": "https://vocab.egm.io/labSampleNo", + "lead": "https://vocab.egm.io/lead", + "limitOfReporting": "https://vocab.egm.io/limitOfReporting", + "lincomycin": "https://vocab.egm.io/lincomycin", + "lithium": "https://vocab.egm.io/lithium", + "loperamide": "https://vocab.egm.io/loperamide", + "magnesium": "https://vocab.egm.io/magnesium", + "manganese": "https://vocab.egm.io/manganese", + "metoprolol": "https://vocab.egm.io/metoprolol", + "metronidazole": "https://vocab.egm.io/metronidazole", + "molybdenum": "https://vocab.egm.io/molybdenum", + "mycophenolateMofetil": "https://vocab.egm.io/mycophenolateMofetil", + "name": "https://schema.org/name", + "naproxen": "https://vocab.egm.io/naproxen", + "nickel": "https://vocab.egm.io/nickel", + "nitrateAsN": "https://vocab.egm.io/nitrateAsN", + "nitrates": "https://vocab.egm.io/nitrates", + "nitriteAsN": "https://vocab.egm.io/nitriteAsN", + "nitrites": "https://vocab.egm.io/nitrites", + "oxazepam": "https://vocab.egm.io/oxazepam", + "paclitaxel": "https://vocab.egm.io/paclitaxel", + "paracetamolAcetaminophen": "https://vocab.egm.io/paracetamolAcetaminophen", + "ph": "https://vocab.egm.io/ph", + "phosphorus": "https://vocab.egm.io/phosphorus", + "phosphorusAsP2O5": "https://vocab.egm.io/phosphorusAsP2O5", + "piroxicam": "https://vocab.egm.io/piroxicam", + "potassium": "https://vocab.egm.io/potassium", + "propranolol": "https://vocab.egm.io/propranolol", + "salbutamol": "https://vocab.egm.io/salbutamol", + "sampleDate": "https://vocab.egm.io/sampleDate", + "selenium": "https://vocab.egm.io/selenium", + "sertraline": "https://vocab.egm.io/sertraline", + "silver": "https://vocab.egm.io/silver", + "sodium": "https://vocab.egm.io/sodium", + "sotalol": "https://vocab.egm.io/sotalol", + "station": "https://vocab.egm.io/station", + "sulfamethazine": "https://vocab.egm.io/sulfamethazine", + "sulfamethoxazole": "https://vocab.egm.io/sulfamethoxazole", + "temperature": "https://vocab.egm.io/temperature", + "terbutaline": "https://vocab.egm.io/terbutaline", + "thallium": "https://vocab.egm.io/thallium", + "thebain": "https://vocab.egm.io/thebain", + "totalNitrogenAsN": "https://vocab.egm.io/totalNitrogenAsN", + "totalOrganicCarbon": "https://vocab.egm.io/totalOrganicCarbon", + "totalPhosphorusAsP": "https://vocab.egm.io/totalPhosphorusAsP", + "totalPhosphorusAsPo43": "https://vocab.egm.io/totalPhosphorusAsPo43", + "tramadol": "https://vocab.egm.io/tramadol", + "trimethoprim": "https://vocab.egm.io/trimethoprim", + "valsartan": "https://vocab.egm.io/valsartan", + "vanadium": "https://vocab.egm.io/vanadium", + "warfarin": "https://vocab.egm.io/warfarin", + "zinc": "https://vocab.egm.io/zinc", + "zolpidem": "https://vocab.egm.io/zolpidem" + } +} diff --git a/chemicals/ngsild-payloads/laboratoryResults.jsonld b/chemicals/ngsild-payloads/laboratoryResults.jsonld new file mode 100644 index 0000000..d86c52f --- /dev/null +++ b/chemicals/ngsild-payloads/laboratoryResults.jsonld @@ -0,0 +1,1158 @@ +[ + { + "id": "urn:ngsi-ld:LaboratoryResults:TWW:PR2481440", + "type": "LaboratoryResults", + "name": { + "type": "Property", + "value": "TWW PR2481440" + }, + "labSampleNo": { + "type": "Property", + "value": "1.0" + }, + "clientSampleNo": { + "type": "Property", + "value": "112400016" + }, + "station": { + "type": "Property", + "value": "TWW" + }, + "sampleDate": { + "type": "Property", + "value": "04/07/2024" + }, + "temperature": { + "type": "Property", + "value": 26.2, + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "CEL" + }, + "ph": { + "type": "Property", + "value": 6.46, + "observedAt": "2024-07-04T00:00:00Z" + }, + "eh": { + "type": "Property", + "value": 71.1, + "observedAt": "2024-07-04T00:00:00Z" + }, + "ec": { + "type": "Property", + "value": 1102.0, + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "G42" + }, + "dissolvedO2": { + "type": "Property", + "value": 2.83, + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "M1" + }, + "totalOrganicCarbon": { + "type": "Property", + "value": 9.75, + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "M1", + "limitOfReporting": { + "type": "Property", + "value": 0.5, + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "M1" + } + }, + "ammoniaAndAmmoniumIonsAsN": { + "type": "Property", + "value": 0.064, + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "M1", + "limitOfReporting": { + "type": "Property", + "value": 0.04, + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "M1" + } + }, + "ammoniaAndAmmoniumIonsAsNh4": { + "type": "Property", + "value": 0.083, + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "M1", + "limitOfReporting": { + "type": "Property", + "value": 0.05, + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "M1" + } + }, + "chloride": { + "type": "Property", + "value": 210.0, + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "M1", + "limitOfReporting": { + "type": "Property", + "value": 1.0, + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "M1" + } + }, + "nitrateAsN": { + "type": "Property", + "value": 11.8, + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "M1", + "limitOfReporting": { + "type": "Property", + "value": 0.5, + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "M1" + } + }, + "nitrates": { + "type": "Property", + "value": 52.1, + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "M1", + "limitOfReporting": { + "type": "Property", + "value": 2.0, + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "M1" + } + }, + "nitriteAsN": { + "type": "Property", + "value": "<0.015", + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "M1", + "limitOfReporting": { + "type": "Property", + "value": 0.01, + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "M1" + } + }, + "nitrites": { + "type": "Property", + "value": "<0.060", + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "M1", + "limitOfReporting": { + "type": "Property", + "value": 0.04, + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "M1" + } + }, + "phosphorusAsP2O5": { + "type": "Property", + "value": 19.3, + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "M1", + "limitOfReporting": { + "type": "Property", + "value": 0.12, + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "M1" + } + }, + "totalNitrogenAsN": { + "type": "Property", + "value": 15.8, + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "M1", + "limitOfReporting": { + "type": "Property", + "value": 0.1, + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "M1" + } + }, + "totalPhosphorusAsP": { + "type": "Property", + "value": 8.41, + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "M1", + "limitOfReporting": { + "type": "Property", + "value": 0.05, + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "M1" + } + }, + "totalPhosphorusAsPo43": { + "type": "Property", + "value": 25.8, + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "M1", + "limitOfReporting": { + "type": "Property", + "value": 0.15, + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "M1" + } + }, + "anastrozole": { + "type": "Property", + "value": "<0.100", + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "H29", + "limitOfReporting": { + "type": "Property", + "value": 0.01, + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "H29" + } + }, + "atenolol": { + "type": "Property", + "value": "<0.100", + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "H29", + "limitOfReporting": { + "type": "Property", + "value": 0.01, + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "H29" + } + }, + "azathioprine": { + "type": "Property", + "value": "<0.100", + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "H29", + "limitOfReporting": { + "type": "Property", + "value": 0.01, + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "H29" + } + }, + "bezafibrate": { + "type": "Property", + "value": "<0.100", + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "H29", + "limitOfReporting": { + "type": "Property", + "value": 0.01, + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "H29" + } + }, + "buprenorphine": { + "type": "Property", + "value": "<0.100", + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "H29", + "limitOfReporting": { + "type": "Property", + "value": 0.01, + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "H29" + } + }, + "butorphanol": { + "type": "Property", + "value": "<0.100", + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "H29", + "limitOfReporting": { + "type": "Property", + "value": 0.01, + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "H29" + } + }, + "caffeine": { + "type": "Property", + "value": "<0.100", + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "H29", + "limitOfReporting": { + "type": "Property", + "value": 0.01, + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "H29" + } + }, + "capecitabine": { + "type": "Property", + "value": "<0.100", + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "H29", + "limitOfReporting": { + "type": "Property", + "value": 0.01, + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "H29" + } + }, + "carbamazepine": { + "type": "Property", + "value": 1.0, + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "H29", + "limitOfReporting": { + "type": "Property", + "value": 0.01, + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "H29" + } + }, + "citalopram": { + "type": "Property", + "value": 0.299, + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "H29", + "limitOfReporting": { + "type": "Property", + "value": 0.01, + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "H29" + } + }, + "clofibricAcid": { + "type": "Property", + "value": "<0.100", + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "H29", + "limitOfReporting": { + "type": "Property", + "value": 0.01, + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "H29" + } + }, + "cyclobenzaprine": { + "type": "Property", + "value": "<0.100", + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "H29", + "limitOfReporting": { + "type": "Property", + "value": 0.01, + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "H29" + } + }, + "cyclophosphamide": { + "type": "Property", + "value": "<0.100", + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "H29", + "limitOfReporting": { + "type": "Property", + "value": 0.01, + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "H29" + } + }, + "diazepam": { + "type": "Property", + "value": "<0.100", + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "H29", + "limitOfReporting": { + "type": "Property", + "value": 0.01, + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "H29" + } + }, + "diclofenac": { + "type": "Property", + "value": 0.965, + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "H29", + "limitOfReporting": { + "type": "Property", + "value": 0.01, + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "H29" + } + }, + "enalapril": { + "type": "Property", + "value": "<0.100", + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "H29", + "limitOfReporting": { + "type": "Property", + "value": 0.01, + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "H29" + } + }, + "fluoxetine": { + "type": "Property", + "value": 0.142, + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "H29", + "limitOfReporting": { + "type": "Property", + "value": 0.01, + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "H29" + } + }, + "flutamide": { + "type": "Property", + "value": "<0.100", + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "H29", + "limitOfReporting": { + "type": "Property", + "value": 0.01, + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "H29" + } + }, + "furosemide": { + "type": "Property", + "value": "<0.100", + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "H29", + "limitOfReporting": { + "type": "Property", + "value": 0.01, + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "H29" + } + }, + "gabapentin": { + "type": "Property", + "value": 0.345, + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "H29", + "limitOfReporting": { + "type": "Property", + "value": 0.01, + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "H29" + } + }, + "gemfibrozil": { + "type": "Property", + "value": "<0.200", + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "H29", + "limitOfReporting": { + "type": "Property", + "value": 0.02, + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "H29" + } + }, + "hydrochlorothiazide": { + "type": "Property", + "value": 2.0, + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "H29", + "limitOfReporting": { + "type": "Property", + "value": 0.01, + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "H29" + } + }, + "ifosfamide": { + "type": "Property", + "value": "<0.100", + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "H29", + "limitOfReporting": { + "type": "Property", + "value": 0.01, + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "H29" + } + }, + "indomethacin": { + "type": "Property", + "value": "<0.100", + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "H29", + "limitOfReporting": { + "type": "Property", + "value": 0.01, + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "H29" + } + }, + "iohexol": { + "type": "Property", + "value": "<0.300", + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "H29", + "limitOfReporting": { + "type": "Property", + "value": 0.03, + "observedAt": "2024-07-04T00:00:00Z", + "unitCode": "H29" + } + }, + "iomeprol": { + "type": "Property", + "value": "<0.300", + 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