diff --git a/code/earth_data_utils.py b/code/earth_data_utils.py index ec98132..8a9cd93 100644 --- a/code/earth_data_utils.py +++ b/code/earth_data_utils.py @@ -13,6 +13,8 @@ # Harmony import geopandas as gpd +import geoviews as gv +gv.extension('bokeh', 'matplotlib') from harmony import BBox, Client, Collection, Request, LinkType import datetime as dt import s3fs diff --git a/code/install_packages.sh b/code/install_packages.sh new file mode 100644 index 0000000..a52783a --- /dev/null +++ b/code/install_packages.sh @@ -0,0 +1,3 @@ +#!/bin/bash +pip3 install geopandas earthaccess xarray harmony-py s3fs + diff --git a/code/process.json b/code/process.json index 9bc4c76..89a2234 100644 --- a/code/process.json +++ b/code/process.json @@ -18,7 +18,7 @@ "id" : "nlsntt", "name" : "retrieve_sst", "description" : null, - "code" : "from earth_data_utils import *\n\ndef search_and_get_sst():\n auth_earthaccess()\n results = earthaccess.search_data(\n short_name=sst_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-07-02\"),\n )\n print(\"found results: \", results)\n return results\n\ndef plot_subset(ds_subset):\n ds_subset.plot(figsize=(12,6), x='lon', y='lat')\n home_dir = os.path.expanduser('~')\n \n file_name = f\"geoweaver_plot_{str(uuid.uuid4())}.png\"\n save_file_path = os.path.join(home_dir, file_name)\n plt.savefig(save_file_path)\n print(f\"new figure is saved to {save_file_path}\")\n\nwith get_dataset(search_and_get_sst()) as ds:\n subset = ds[\"analysed_sst\"].sel(lat=slice(27, 37), \n lon=slice(-70,-50)).std('time')\n plot_subset(subset)\n\n", + "code" : "from earth_data_utils import *\n\ndef search_and_get_sst():\n auth_earthaccess()\n results = earthaccess.search_data(\n short_name=sst_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-07-02\"),\n )\n print(\"found results: \", results)\n return results\n\ndef plot_subset(ds_subset):\n ds_subset.plot(figsize=(12,6), x='lon', y='lat')\n home_dir = os.path.expanduser('~')\n \n file_name = f\"geoweaver_plot_sst.png\"\n save_file_path = os.path.join(home_dir, file_name)\n plt.savefig(save_file_path)\n print(f\"new figure is saved to {save_file_path}\")\n\nwith get_dataset(search_and_get_sst()) as ds:\n subset = ds[\"analysed_sst\"].sel(lat=slice(27, 37), \n lon=slice(-70,-50)).std('time')\n plot_subset(subset)\n\n", "lang" : "python", "owner" : "111111", "confidential" : "FALSE" @@ -26,7 +26,7 @@ "id" : "e57twj", "name" : "retrieve_ssh", "description" : null, - "code" : "from earth_data_utils import *\n\ndef search_ssh():\n auth_earthaccess()\n results = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-09-30\"),\n )\n return results\n\ndef plot_subset(ds_subset):\n ds_subset.plot(figsize=(12,6), x='Longitude', y='Latitude')\n home_dir = os.path.expanduser('~')\n \n file_name = f\"geoweaver_plot_{str(uuid.uuid4())}.png\"\n save_file_path = os.path.join(home_dir, file_name)\n plt.savefig(save_file_path)\n print(f\"new figure is saved to {save_file_path}\")\n\nwith get_dataset(search_ssh()) as ds:\n subset = ds[\"SLA\"].sel(Latitude=slice(-79, 79), \n Longitude=slice(100,300)).std('Time')\n plot_subset(subset)\n", + "code" : "from earth_data_utils import *\n\ndef search_ssh():\n auth_earthaccess()\n results = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-09-30\"),\n )\n return results\n\ndef plot_subset(ds_subset):\n ds_subset.plot(figsize=(12,6), x='Longitude', y='Latitude')\n home_dir = os.path.expanduser('~')\n \n file_name = f\"geoweaver_plot_ssh.png\"\n save_file_path = os.path.join(home_dir, file_name)\n plt.savefig(save_file_path)\n print(f\"new figure is saved to {save_file_path}\")\n\nwith get_dataset(search_ssh()) as ds:\n subset = ds[\"SLA\"].sel(Latitude=slice(-79, 79), \n Longitude=slice(100,300)).std('Time')\n plot_subset(subset)\n", "lang" : "python", "owner" : "111111", "confidential" : "FALSE" diff --git a/code/retrieve_ssh.py b/code/retrieve_ssh.py index e13b3e8..6926c36 100644 --- a/code/retrieve_ssh.py +++ b/code/retrieve_ssh.py @@ -13,7 +13,7 @@ def plot_subset(ds_subset): ds_subset.plot(figsize=(12,6), x='Longitude', y='Latitude') home_dir = os.path.expanduser('~') - file_name = f"geoweaver_plot_{str(uuid.uuid4())}.png" + file_name = f"geoweaver_plot_ssh.png" save_file_path = os.path.join(home_dir, file_name) plt.savefig(save_file_path) print(f"new figure is saved to {save_file_path}") diff --git a/code/retrieve_sst.py b/code/retrieve_sst.py index 315d58c..18c0940 100644 --- a/code/retrieve_sst.py +++ b/code/retrieve_sst.py @@ -14,7 +14,7 @@ def plot_subset(ds_subset): ds_subset.plot(figsize=(12,6), x='lon', y='lat') home_dir = os.path.expanduser('~') - file_name = f"geoweaver_plot_{str(uuid.uuid4())}.png" + file_name = f"geoweaver_plot_sst.png" save_file_path = os.path.join(home_dir, file_name) plt.savefig(save_file_path) print(f"new figure is saved to {save_file_path}") diff --git a/history/3ZlO4QZpqjhGyKmyXO.json b/history/3ZlO4QZpqjhGyKmyXO.json new file mode 100644 index 0000000..522b4e8 --- /dev/null +++ b/history/3ZlO4QZpqjhGyKmyXO.json @@ -0,0 +1,41 @@ +[{ + "history_id" : "qjzve8oimqm", + "history_input" : null, + "history_output" : "Authentication Failed. Wrong Password.", + "history_begin_time" : 1686629569918, + "history_end_time" : 1686629570051, + "history_notes" : null, + "history_process" : "wttkvt", + "host_id" : "100001", + "indicator" : "Failed" +},{ + "history_id" : "htpbdvjc8no", + "history_input" : null, + "history_output" : "Authentication Failed. Wrong Password.", + "history_begin_time" : 1686629570919, + "history_end_time" : 1686629570977, + "history_notes" : null, + "history_process" : "yvo1ds", + "host_id" : "100001", + "indicator" : "Failed" +},{ + "history_id" : "j2rg3ef6rul", + "history_input" : null, + "history_output" : "Authentication Failed. Wrong Password.", + "history_begin_time" : 1686629571059, + "history_end_time" : 1686629571096, + "history_notes" : null, + "history_process" : "cgvhiy", + "host_id" : "100001", + "indicator" : "Failed" +},{ + "history_id" : "zpwvlwn3rb8", + "history_input" : null, + "history_output" : "Authentication Failed. Wrong Password.", + "history_begin_time" : 1686629571983, + "history_end_time" : 1686629572047, + "history_notes" : null, + "history_process" : "1b4ko0", + "host_id" : "100001", + "indicator" : "Failed" +}] diff --git a/history/54jcaiqoso3iree437.json b/history/54jcaiqoso3iree437.json new file mode 100644 index 0000000..0ca87c1 --- /dev/null +++ b/history/54jcaiqoso3iree437.json @@ -0,0 +1,31 @@ +[{ + "history_id" : "u51ro7imrzb", + "history_input" : null, + "history_output" : "Authentication Failed. Wrong Password.", + "history_begin_time" : 1686719429276, + "history_end_time" : 1686719429431, + "history_notes" : null, + "history_process" : "wttkvt", + "host_id" : "100001", + "indicator" : "Failed" +},{ + "history_id" : "gwrbbwkvoyc", + "history_input" : null, + "history_output" : "Authentication Failed. Wrong Password.", + "history_begin_time" : 1686719430276, + "history_end_time" : 1686719430322, + "history_notes" : null, + "history_process" : "cgvhiy", + "host_id" : "100001", + "indicator" : "Failed" +},{ + "history_id" : "bp9bgjy10zr", + "history_input" : null, + "history_output" : "Authentication Failed. Wrong Password.", + "history_begin_time" : 1686719430446, + "history_end_time" : 1686719430487, + "history_notes" : null, + "history_process" : "1b4ko0", + "host_id" : "100001", + "indicator" : "Failed" +}] diff --git a/history/5dixki8g2scz0sjj56.json b/history/5dixki8g2scz0sjj56.json new file mode 100644 index 0000000..eff9bd4 --- /dev/null +++ b/history/5dixki8g2scz0sjj56.json @@ -0,0 +1,21 @@ +[{ + "history_id" : "y8vpu7ag2f3", + "history_input" : "# Write first python in Geoweaver\nx = 1", + "history_output" : "", + "history_begin_time" : 1686363724744, + "history_end_time" : 1686363725573, + "history_notes" : null, + "history_process" : "qmc7xi", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "xfgwx8dm9v7", + "history_input" : "# Write first python in Geoweaver\nx = 1", + "history_output" : "", + "history_begin_time" : 1686363726747, + "history_end_time" : 1686363727401, + "history_notes" : null, + "history_process" : "qmc7xi", + "host_id" : "100001", + "indicator" : "Done" +}] diff --git a/history/5ou0GVSM1NQnlv7FOB.json b/history/5ou0GVSM1NQnlv7FOB.json new file mode 100644 index 0000000..3a28c47 --- /dev/null +++ b/history/5ou0GVSM1NQnlv7FOB.json @@ -0,0 +1,41 @@ +[{ + "history_id" : "s5e7087vr1q", + "history_input" : "\n\n\n# Suppress warnings\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\n", + "history_begin_time" : 1686632672962, + "history_end_time" : 1686632681141, + "history_notes" : null, + "history_process" : "wttkvt", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "zqhu0tomq42", + "history_input" : "from earth_data_utils import *\n\nssh_short_name = \"SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205\"\n\nresults = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-09-30\"),\n)", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\n", + "history_begin_time" : 1686632682995, + "history_end_time" : 1686632692171, + "history_notes" : null, + "history_process" : "yvo1ds", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "1llchcspi3l", + "history_input" : "No code saved", + "history_output" : "Skipped", + "history_begin_time" : 1686632672823, + "history_end_time" : 1686632672823, + "history_notes" : null, + "history_process" : "cgvhiy", + "host_id" : "100001", + "indicator" : "Skipped" +},{ + "history_id" : "joj0lfoon7u", + "history_input" : "# Suppress warnings\nimport os\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs\nimport matplotlib.pyplot as plt\nfrom earth_access_authenticate import *\n\ncreds = harmony_client.aws_credentials()\ns3_fs = s3fs.S3FileSystem(\n key=creds['aws_access_key_id'],\n secret=creds['aws_secret_access_key'],\n token=creds['aws_session_token'],\n client_kwargs={'region_name':'us-west-2'},\n)\nf = s3_fs.open(url, mode='rb')\nds = xr.open_dataset(f)\nds.analysed_sst.plot()\nhome_dir = os.path.expanduser('~')\nplt.savefig(os.path.join(home_dir, 'plot2.png'))", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\nGranules found: 18\nYou're now authenticated with NASA Earthdata Login\nUsing token with expiration date: 08/07/2023\nUsing .netrc file for EDL\n Opening 18 granules, approx size: 0.0 GB\nSUBMITTING | : 0%| | 0/18 [00:00\nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\n", + "history_begin_time" : 1686632672898, + "history_end_time" : 1686632761172, + "history_notes" : null, + "history_process" : "1b4ko0", + "host_id" : "100001", + "indicator" : "Done" +}] diff --git a/history/5ucpoaa3e0bbnwyu1n.json b/history/5ucpoaa3e0bbnwyu1n.json new file mode 100644 index 0000000..f768b73 --- /dev/null +++ b/history/5ucpoaa3e0bbnwyu1n.json @@ -0,0 +1,41 @@ +[{ + "history_id" : "l35gxvzl580", + "history_input" : "\n\n\n# Suppress warnings\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs", + "history_output" : "Traceback (most recent call last):\n File \"/Users/joe/gw-workspace/l35gxvzl580/earth_data_utils.py\", line 10, in \n import earthaccess \nModuleNotFoundError: No module named 'earthaccess'\n", + "history_begin_time" : 1686761482808, + "history_end_time" : 1686761483335, + "history_notes" : null, + "history_process" : "wttkvt", + "host_id" : "100001", + "indicator" : "Failed" +},{ + "history_id" : "npsj6zmjg8v", + "history_input" : "from earth_data_utils import *\n\nssh_short_name = \"SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205\"\n\nresults = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-09-30\"),\n)", + "history_output" : "Traceback (most recent call last):\n File \"/Users/joe/gw-workspace/npsj6zmjg8v/search_data.py\", line 1, in \n from earth_data_utils import *\n File \"/Users/joe/gw-workspace/npsj6zmjg8v/earth_data_utils.py\", line 10, in \n import earthaccess \nModuleNotFoundError: No module named 'earthaccess'\n", + "history_begin_time" : 1686761484815, + "history_end_time" : 1686761484929, + "history_notes" : null, + "history_process" : "yvo1ds", + "host_id" : "100001", + "indicator" : "Failed" +},{ + "history_id" : "coh219tjkes", + "history_input" : "from search_data import *\n\nsst_short_name=\"MUR-JPL-L4-GLOB-v4.1\"\n\nresults = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-09-30\"),\n)\n\nauth = earthaccess.login(strategy=\"netrc\", persist=True)\nds = xr.open_mfdataset(earthaccess.open(results))\ngeojson_path = '/home/jovyan/gulf.json'\ngdf = gpd.read_file(geojson_path) #Return a GeoDataFrame object\n\n\nharmony_client = Client()\nsst_short_name=\"MUR-JPL-L4-GLOB-v4.1\"\n\nrequest = Request(\n collection=Collection(id=sst_short_name),\n shape=geojson_path,\n temporal={\n 'start': dt.datetime(2021, 8, 1, 1),\n 'stop': dt.datetime(2021, 8, 1, 2) \n },\n)\njob_id = harmony_client.submit(request)\nharmony_client.wait_for_processing(job_id, show_progress=False)\ndata = harmony_client.result_json(job_id)\nresults = harmony_client.result_urls(job_id, link_type=LinkType.s3)\nurls = list(results)\nurl = urls[0]\n", + "history_output" : "Traceback (most recent call last):\n File \"/Users/joe/gw-workspace/coh219tjkes/earth_access_authenticate.py\", line 1, in \n from search_data import *\n File \"/Users/joe/gw-workspace/coh219tjkes/search_data.py\", line 1, in \n from earth_data_utils import *\n File \"/Users/joe/gw-workspace/coh219tjkes/earth_data_utils.py\", line 10, in \n import earthaccess \nModuleNotFoundError: No module named 'earthaccess'\n", + "history_begin_time" : 1686761486386, + "history_end_time" : 1686761486527, + "history_notes" : null, + "history_process" : "cgvhiy", + "host_id" : "100001", + "indicator" : "Failed" +},{ + "history_id" : "dadwunxuogt", + "history_input" : "# Suppress warnings\nimport os\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs\nimport matplotlib.pyplot as plt\nfrom earth_access_authenticate import *\n\ncreds = harmony_client.aws_credentials()\ns3_fs = s3fs.S3FileSystem(\n key=creds['aws_access_key_id'],\n secret=creds['aws_secret_access_key'],\n token=creds['aws_session_token'],\n client_kwargs={'region_name':'us-west-2'},\n)\nf = s3_fs.open(url, mode='rb')\nds = xr.open_dataset(f)\nds.analysed_sst.plot()\nhome_dir = os.path.expanduser('~')\nplt.savefig(os.path.join(home_dir, 'plot2.png'))", + "history_output" : "Traceback (most recent call last):\n File \"/Users/joe/gw-workspace/dadwunxuogt/s3_file_storage.py\", line 8, in \n import earthaccess \nModuleNotFoundError: No module named 'earthaccess'\n", + "history_begin_time" : 1686761487968, + "history_end_time" : 1686761488098, + "history_notes" : null, + "history_process" : "1b4ko0", + "host_id" : "100001", + "indicator" : "Failed" +}] diff --git a/history/5uzqmkhig32ub23cax.json b/history/5uzqmkhig32ub23cax.json new file mode 100644 index 0000000..c94cb68 --- /dev/null +++ b/history/5uzqmkhig32ub23cax.json @@ -0,0 +1,41 @@ +[{ + "history_id" : "pw27re37yjl", + "history_input" : "\n\n\n# Suppress warnings\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\n", + "history_begin_time" : 1686245952435, + "history_end_time" : 1686245961027, + "history_notes" : null, + "history_process" : "wttkvt", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "vb5uvkvdlgm", + "history_input" : "from earth_data_utils import *\n\nssh_short_name = \"SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205\"\n\nresults = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-09-30\"),\n)", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\n", + "history_begin_time" : 1686245962439, + "history_end_time" : 1686245978056, + "history_notes" : null, + "history_process" : "yvo1ds", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "qedfp05e1cd", + "history_input" : "from search_data import *\n\nauth = earthaccess.login(strategy=\"netrc\", persist=True)\nds = xr.open_mfdataset(earthaccess.open(results))\ngeojson_path = '/home/jovyan/gulf.json'\ngdf = gpd.read_file(geojson_path) #Return a GeoDataFrame object\n\ntry:\n harmony_client = Client()\n sst_short_name=\"MUR-JPL-L4-GLOB-v4.1\"\n\n request = Request(\n collection=Collection(id=sst_short_name),\n shape=geojson_path,\n temporal={\n 'start': dt.datetime(2021, 8, 1, 1),\n 'stop': dt.datetime(2021, 8, 1, 2) \n },\n )\n job_id = harmony_client.submit(request)\n harmony_client.wait_for_processing(job_id, show_progress=True)\n data = harmony_client.result_json(job_id)\n results = harmony_client.result_urls(job_id, link_type=LinkType.s3)\n urls = list(results)\n url = urls[0]\nexcept:\n print(\"please re-run the request\")", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\nYou're now authenticated with NASA Earthdata Login\nUsing token with expiration date: 08/07/2023\nUsing .netrc file for EDL\n Opening 18 granules, approx size: 0.0 GB\nSUBMITTING | : 0%| | 0/18 [00:00\nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\n", + "history_begin_time" : 1686245980073, + "history_end_time" : 1686246081011, + "history_notes" : null, + "history_process" : "cgvhiy", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "enm6os9uv8p", + "history_input" : "from earth_access_authenticate import *\n\nsst_short_name=\"MUR-JPL-L4-GLOB-v4.1\"\ntry:\n harmony_client = Client()\n request = Request(\n collection=Collection(id=sst_short_name),\n shape='./shared/earthdata-cloud-cookbook/examples/data/gulf.json',\n temporal={\n 'start': dt.datetime(2021, 8, 1, 1),\n 'stop': dt.datetime(2021, 8, 1, 2) \n },\n )\n job_id = harmony_client.submit(request)\n harmony_client.wait_for_processing(job_id, show_progress=True)\n data = harmony_client.result_json(job_id)\n results = harmony_client.result_urls(job_id, link_type=LinkType.s3)\n urls = list(results)\n url = urls[0]\nexcept:\n print(\"please re-run the workflow\")", + "history_output" : "Running", + "history_begin_time" : 1686246082520, + "history_end_time" : 1686246082090, + "history_notes" : null, + "history_process" : "v2ow93", + "host_id" : "100001", + "indicator" : "Running" +}] diff --git a/history/6hxs1emptzyrmsi0f3.json b/history/6hxs1emptzyrmsi0f3.json new file mode 100644 index 0000000..bcfcc99 --- /dev/null +++ b/history/6hxs1emptzyrmsi0f3.json @@ -0,0 +1,31 @@ +[{ + "history_id" : "uvo0yrqqk9g", + "history_input" : "\n\n\n# Suppress warnings\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\n", + "history_begin_time" : 1686246439537, + "history_end_time" : 1686246448413, + "history_notes" : null, + "history_process" : "wttkvt", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "00z9oxnb2zd", + "history_input" : "from earth_data_utils import *\n\nssh_short_name = \"SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205\"\n\nresults = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-09-30\"),\n)", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\n", + "history_begin_time" : 1686246449538, + "history_end_time" : 1686246460281, + "history_notes" : null, + "history_process" : "yvo1ds", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "2pa3md4k73i", + "history_input" : "from search_data import *\n\nauth = earthaccess.login(strategy=\"netrc\", persist=True)\nds = xr.open_mfdataset(earthaccess.open(results))\ngeojson_path = '/home/jovyan/gulf.json'\ngdf = gpd.read_file(geojson_path) #Return a GeoDataFrame object\n\ntry:\n harmony_client = Client()\n sst_short_name=\"MUR-JPL-L4-GLOB-v4.1\"\n\n request = Request(\n collection=Collection(id=sst_short_name),\n shape=geojson_path,\n temporal={\n 'start': dt.datetime(2021, 8, 1, 1),\n 'stop': dt.datetime(2021, 8, 1, 2) \n },\n )\n job_id = harmony_client.submit(request)\n harmony_client.wait_for_processing(job_id, show_progress=True)\n data = harmony_client.result_json(job_id)\n results = harmony_client.result_urls(job_id, link_type=LinkType.s3)\n urls = list(results)\n url = urls[0]\nexcept:\n print(\"please re-run the request\")", + "history_output" : "Running", + "history_begin_time" : 1686246461905, + "history_end_time" : 1686246461463, + "history_notes" : null, + "history_process" : "cgvhiy", + "host_id" : "100001", + "indicator" : "Running" +}] diff --git a/history/8nqne2wcyke9t1hy5p.json b/history/8nqne2wcyke9t1hy5p.json new file mode 100644 index 0000000..14c9d70 --- /dev/null +++ b/history/8nqne2wcyke9t1hy5p.json @@ -0,0 +1,31 @@ +[{ + "history_id" : "6vcghqhwxjo", + "history_input" : null, + "history_output" : "Authentication Failed. Wrong Password.", + "history_begin_time" : 1686721948005, + "history_end_time" : 1686721948114, + "history_notes" : null, + "history_process" : "wttkvt", + "host_id" : "100001", + "indicator" : "Failed" +},{ + "history_id" : "4awj85jgsaa", + "history_input" : null, + "history_output" : "Authentication Failed. Wrong Password.", + "history_begin_time" : 1686721949005, + "history_end_time" : 1686721949050, + "history_notes" : null, + "history_process" : "cgvhiy", + "host_id" : "100001", + "indicator" : "Failed" +},{ + "history_id" : "x93fbceke61", + "history_input" : null, + "history_output" : "Authentication Failed. Wrong Password.", + "history_begin_time" : 1686721949124, + "history_end_time" : 1686721949163, + "history_notes" : null, + "history_process" : "1b4ko0", + "host_id" : "100001", + "indicator" : "Failed" +}] diff --git a/history/BacPAagztwKFogMSWa.json b/history/BacPAagztwKFogMSWa.json new file mode 100644 index 0000000..5238b05 --- /dev/null +++ b/history/BacPAagztwKFogMSWa.json @@ -0,0 +1,41 @@ +[{ + "history_id" : "s7tk2j8ds8o", + "history_input" : "\n\n\n# Suppress warnings\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\n", + "history_begin_time" : 1686631604443, + "history_end_time" : 1686631842446, + "history_notes" : null, + "history_process" : "wttkvt", + "host_id" : "100001", + "indicator" : "Stopped" +},{ + "history_id" : "eyco001wisz", + "history_input" : "from earth_data_utils import *\n\nssh_short_name = \"SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205\"\n\nresults = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-09-30\"),\n)", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\n", + "history_begin_time" : 1686631614056, + "history_end_time" : 1686631842448, + "history_notes" : null, + "history_process" : "yvo1ds", + "host_id" : "100001", + "indicator" : "Stopped" +},{ + "history_id" : "6k5kastvud0", + "history_input" : "No code saved", + "history_output" : "Skipped", + "history_begin_time" : 1686631603556, + "history_end_time" : 1686631842449, + "history_notes" : null, + "history_process" : "cgvhiy", + "host_id" : "100001", + "indicator" : "Stopped" +},{ + "history_id" : "017zyblveve", + "history_input" : "import matplotlib.pyplot as plt\nfrom earth_access_authenticate import *\n\ntry:\n creds = harmony_client.aws_credentials()\n s3_fs = s3fs.S3FileSystem(\n key=creds['aws_access_key_id'],\n secret=creds['aws_secret_access_key'],\n token=creds['aws_session_token'],\n client_kwargs={'region_name':'us-west-2'},\n )\n f = s3_fs.open(url, mode='rb')\n ds = xr.open_dataset(f)\n ds.analysed_sst.plot()\n plt.savefig('plot.png')\nexcept Exception as e:\n print('please check the write permissions to directory', e)", + "history_output" : "Running", + "history_begin_time" : 1686631603591, + "history_end_time" : 1686631842470, + "history_notes" : null, + "history_process" : "1b4ko0", + "host_id" : "100001", + "indicator" : "Done" +}] diff --git a/history/QBaTZsjXUzZrYyaSGY.json b/history/QBaTZsjXUzZrYyaSGY.json new file mode 100644 index 0000000..8480b79 --- /dev/null +++ b/history/QBaTZsjXUzZrYyaSGY.json @@ -0,0 +1,51 @@ +[{ + "history_id" : "30ixl9b31l4", + "history_input" : "\n\n\n# Suppress warnings\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\n", + "history_begin_time" : 1686242527573, + "history_end_time" : 1686242535971, + "history_notes" : null, + "history_process" : "wttkvt", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "0i4kigpgw4j", + "history_input" : "from earth_data_utils import *\n\nssh_short_name = \"SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205\"\n\nresults = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-09-30\"),\n)", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\n", + "history_begin_time" : 1686242537574, + "history_end_time" : 1686242547086, + "history_notes" : null, + "history_process" : "yvo1ds", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "txmr6rul8jv", + "history_input" : "from search_data import *\n\nauth = earthaccess.login(strategy=\"netrc\", persist=True)\nds = xr.open_mfdataset(earthaccess.open(results))\nds_subset = ds['SLA'].sel(Latitude=slice(15.8, 35.9), Longitude=slice(234.5,260.5)) \ngdf = {\n \"type\": \"FeatureCollection\",\n \"features\": [\n {\n \"type\": \"Feature\",\n \"properties\": {},\n \"geometry\": {\n \"type\": \"Polygon\",\n \"coordinates\": [\n [\n [\n -92.50277108026334,\n 29.56938225072281\n ],\n [\n -97.13008502799451,\n 27.537299169977643\n ],\n [\n -97.92333884760556,\n 23.117355263556085\n ],\n [\n -96.20462223844827,\n 19.297357882373674\n ],\n [\n -91.0484724109764,\n 19.2349555158823\n ],\n [\n -89.32975580181909,\n 21.096419248573053\n ],\n [\n -84.63633736912035,\n 21.404467339404434\n ],\n [\n -80.9344862109354,\n 24.928609732834346\n ],\n [\n -83.7769790645417,\n 30.199837703950273\n ],\n [\n -92.50277108026334,\n 29.56938225072281\n ]\n ]\n ]\n }\n }\n ]\n}", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\nYou're now authenticated with NASA Earthdata Login\nUsing token with expiration date: 08/07/2023\nUsing .netrc file for EDL\n Opening 18 granules, approx size: 0.0 GB\nSUBMITTING | : 0%| | 0/18 [00:00\nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\n", + "history_begin_time" : 1686242548985, + "history_end_time" : 1686242574570, + "history_notes" : null, + "history_process" : "cgvhiy", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "oom92m3c948", + "history_input" : "from earth_access_authenticate import *\n\nsst_short_name=\"MUR-JPL-L4-GLOB-v4.1\"\n\nharmony_client = Client()\nrequest = Request(\n collection=Collection(id=sst_short_name),\n shape='./shared/earthdata-cloud-cookbook/examples/data/gulf.json',\n temporal={\n 'start': dt.datetime(2021, 8, 1, 1),\n 'stop': dt.datetime(2021, 8, 1, 2) \n },\n)\njob_id = harmony_client.submit(request)\nharmony_client.wait_for_processing(job_id, show_progress=True)\ndata = harmony_client.result_json(job_id)\nresults = harmony_client.result_urls(job_id, link_type=LinkType.s3)\nurls = list(results)\nurl = urls[0]", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\nYou're now authenticated with NASA Earthdata Login\nUsing token with expiration date: 08/07/2023\nUsing .netrc file for EDL\n Opening 18 granules, approx size: 0.0 GB\nSUBMITTING | : 0%| | 0/18 [00:00\n job_id = harmony_client.submit(request)\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/harmony/harmony.py\", line 715, in submit\n raise Exception(f\"Cannot submit the request due to the following errors: [{msgs}]\")\nException: Cannot submit the request due to the following errors: [The provided shape path \"./shared/earthdata-cloud-cookbook/examples/data/gulf.json\" does not exist]\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\n", + "history_begin_time" : 1686242576101, + "history_end_time" : 1686242600910, + "history_notes" : null, + "history_process" : "v2ow93", + "host_id" : "100001", + "indicator" : "Failed" +},{ + "history_id" : "27lzj9wau2o", + "history_input" : "from connect_harmony_client import *\n\ncreds = harmony_client.aws_credentials()\ns3_fs = s3fs.S3FileSystem(\n key=creds['aws_access_key_id'],\n secret=creds['aws_secret_access_key'],\n token=creds['aws_session_token'],\n client_kwargs={'region_name':'us-west-2'},\n)\nf = s3_fs.open(url, mode='rb')\nds = xr.open_dataset(f)\n#ds.analysed_sst.plot()", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\nYou're now authenticated with NASA Earthdata Login\nUsing token with expiration date: 08/07/2023\nUsing .netrc file for EDL\n Opening 18 granules, approx size: 0.0 GB\nSUBMITTING | : 0%| | 0/18 [00:00\n from connect_harmony_client import *\n File \"/home/jovyan/gw-workspace/27lzj9wau2o/connect_harmony_client.py\", line 14, in \n job_id = harmony_client.submit(request)\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/harmony/harmony.py\", line 715, in submit\n raise Exception(f\"Cannot submit the request due to the following errors: [{msgs}]\")\nException: Cannot submit the request due to the following errors: [The provided shape path \"./shared/earthdata-cloud-cookbook/examples/data/gulf.json\" does not exist]\n", + "history_begin_time" : 1686242602587, + "history_end_time" : 1686242627886, + "history_notes" : null, + "history_process" : "1b4ko0", + "host_id" : "100001", + "indicator" : "Failed" +}] diff --git a/history/UfT7rXlmUDYmfoP804.json b/history/UfT7rXlmUDYmfoP804.json new file mode 100644 index 0000000..0b3459c --- /dev/null +++ b/history/UfT7rXlmUDYmfoP804.json @@ -0,0 +1,41 @@ +[{ + "history_id" : "wbebhds6yv6", + "history_input" : "\n\n\n# Suppress warnings\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\n", + "history_begin_time" : 1686760085425, + "history_end_time" : 1686760109200, + "history_notes" : null, + "history_process" : "wttkvt", + "host_id" : "100001", + "indicator" : "Stopped" +},{ + "history_id" : "678xng6mmd7", + "history_input" : "from earth_data_utils import *\n\nssh_short_name = \"SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205\"\n\nresults = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-09-30\"),\n)", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\n", + "history_begin_time" : 1686760095426, + "history_end_time" : 1686760109272, + "history_notes" : null, + "history_process" : "yvo1ds", + "host_id" : "100001", + "indicator" : "Stopped" +},{ + "history_id" : "zzmsrs9c9e6", + "history_input" : "from search_data import *\n\n\nssh_short_name = \"SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205\"\n\nresults = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-09-30\"),\n)\nsst_short_name=\"MUR-JPL-L4-GLOB-v4.1\"\n\nresults = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-09-30\"),\n)\n\nauth = earthaccess.login(strategy=\"netrc\", persist=True)\nds = xr.open_mfdataset(earthaccess.open(results))\ngeojson_path = '/home/jovyan/gulf.json'\ngdf = gpd.read_file(geojson_path) #Return a GeoDataFrame object\n\n\nharmony_client = Client()\nsst_short_name=\"MUR-JPL-L4-GLOB-v4.1\"\n\nrequest = Request(\n collection=Collection(id=sst_short_name),\n shape=geojson_path,\n temporal={\n 'start': dt.datetime(2021, 8, 1, 1),\n 'stop': dt.datetime(2021, 8, 1, 2) \n },\n)\njob_id = harmony_client.submit(request)\nharmony_client.wait_for_processing(job_id, show_progress=False)\ndata = harmony_client.result_json(job_id)\nresults = harmony_client.result_urls(job_id, link_type=LinkType.s3)\nurls = list(results)\nurl = urls[0]\n", + "history_output" : "Running", + "history_begin_time" : 1686760107041, + "history_end_time" : 1686760109274, + "history_notes" : null, + "history_process" : "cgvhiy", + "host_id" : "100001", + "indicator" : "Stopped" +},{ + "history_id" : "u99npja8dqo", + "history_input" : null, + "history_output" : null, + "history_begin_time" : null, + "history_end_time" : 1686760109275, + "history_notes" : null, + "history_process" : "1b4ko0", + "host_id" : "100001", + "indicator" : "Stopped" +}] diff --git a/history/a4t3g4kcmx2j5iggfu.json b/history/a4t3g4kcmx2j5iggfu.json new file mode 100644 index 0000000..1fcc485 --- /dev/null +++ b/history/a4t3g4kcmx2j5iggfu.json @@ -0,0 +1,51 @@ +[{ + "history_id" : "c86lv1b633a", + "history_input" : "\n\n\n# Suppress warnings\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\n", + "history_begin_time" : 1686241127863, + "history_end_time" : 1686241136662, + "history_notes" : null, + "history_process" : "wttkvt", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "w2a2l6kiyev", + "history_input" : "from earth_data_utils import *\n\nssh_short_name = \"SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205\"\n\nresults = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-09-30\"),\n)\n\nprint(results)", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\n[Collection: {'Version': '2205', 'ShortName': 'SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205'}\nSpatial coverage: {'HorizontalSpatialDomain': {'Geometry': {'BoundingRectangles': [{'WestBoundingCoordinate': 0.083, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': 180, 'NorthBoundingCoordinate': 79.917}, {'WestBoundingCoordinate': -180, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': -0.083, 'NorthBoundingCoordinate': 79.917}]}}}\nTemporal coverage: {'RangeDateTime': {'EndingDateTime': '2021-07-05T00:00:00.000Z', 'BeginningDateTime': '2021-07-05T00:00:00.000Z'}}\nSize(MB): 0\nData: ['https://archive.podaac.earthdata.nasa.gov/podaac-ops-cumulus-protected/SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205/ssh_grids_v2205_2021070512.nc'], Collection: {'Version': '2205', 'ShortName': 'SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205'}\nSpatial coverage: {'HorizontalSpatialDomain': {'Geometry': {'BoundingRectangles': [{'WestBoundingCoordinate': 0.083, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': 180, 'NorthBoundingCoordinate': 79.917}, {'WestBoundingCoordinate': -180, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': -0.083, 'NorthBoundingCoordinate': 79.917}]}}}\nTemporal coverage: {'RangeDateTime': {'EndingDateTime': '2021-07-10T00:00:00.000Z', 'BeginningDateTime': '2021-07-10T00:00:00.000Z'}}\nSize(MB): 0\nData: ['https://archive.podaac.earthdata.nasa.gov/podaac-ops-cumulus-protected/SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205/ssh_grids_v2205_2021071012.nc'], Collection: {'Version': '2205', 'ShortName': 'SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205'}\nSpatial coverage: {'HorizontalSpatialDomain': {'Geometry': {'BoundingRectangles': [{'WestBoundingCoordinate': 0.083, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': 180, 'NorthBoundingCoordinate': 79.917}, {'WestBoundingCoordinate': -180, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': -0.083, 'NorthBoundingCoordinate': 79.917}]}}}\nTemporal coverage: {'RangeDateTime': {'EndingDateTime': '2021-07-15T00:00:00.000Z', 'BeginningDateTime': '2021-07-15T00:00:00.000Z'}}\nSize(MB): 0\nData: ['https://archive.podaac.earthdata.nasa.gov/podaac-ops-cumulus-protected/SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205/ssh_grids_v2205_2021071512.nc'], Collection: {'Version': '2205', 'ShortName': 'SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205'}\nSpatial coverage: {'HorizontalSpatialDomain': {'Geometry': {'BoundingRectangles': [{'WestBoundingCoordinate': 0.083, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': 180, 'NorthBoundingCoordinate': 79.917}, {'WestBoundingCoordinate': -180, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': -0.083, 'NorthBoundingCoordinate': 79.917}]}}}\nTemporal coverage: {'RangeDateTime': {'EndingDateTime': '2021-07-20T00:00:00.000Z', 'BeginningDateTime': '2021-07-20T00:00:00.000Z'}}\nSize(MB): 0\nData: ['https://archive.podaac.earthdata.nasa.gov/podaac-ops-cumulus-protected/SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205/ssh_grids_v2205_2021072012.nc'], Collection: {'Version': '2205', 'ShortName': 'SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205'}\nSpatial coverage: {'HorizontalSpatialDomain': {'Geometry': {'BoundingRectangles': [{'WestBoundingCoordinate': 0.083, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': 180, 'NorthBoundingCoordinate': 79.917}, {'WestBoundingCoordinate': -180, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': -0.083, 'NorthBoundingCoordinate': 79.917}]}}}\nTemporal coverage: {'RangeDateTime': {'EndingDateTime': '2021-07-25T00:00:00.000Z', 'BeginningDateTime': '2021-07-25T00:00:00.000Z'}}\nSize(MB): 0\nData: ['https://archive.podaac.earthdata.nasa.gov/podaac-ops-cumulus-protected/SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205/ssh_grids_v2205_2021072512.nc'], Collection: {'Version': '2205', 'ShortName': 'SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205'}\nSpatial coverage: {'HorizontalSpatialDomain': {'Geometry': {'BoundingRectangles': [{'WestBoundingCoordinate': 0.083, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': 180, 'NorthBoundingCoordinate': 79.917}, {'WestBoundingCoordinate': -180, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': -0.083, 'NorthBoundingCoordinate': 79.917}]}}}\nTemporal coverage: {'RangeDateTime': {'EndingDateTime': '2021-07-30T00:00:00.000Z', 'BeginningDateTime': '2021-07-30T00:00:00.000Z'}}\nSize(MB): 0\nData: ['https://archive.podaac.earthdata.nasa.gov/podaac-ops-cumulus-protected/SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205/ssh_grids_v2205_2021073012.nc'], Collection: {'Version': '2205', 'ShortName': 'SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205'}\nSpatial coverage: {'HorizontalSpatialDomain': {'Geometry': {'BoundingRectangles': [{'WestBoundingCoordinate': 0.083, 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\"coordinates\": [\n [\n [\n -92.50277108026334,\n 29.56938225072281\n ],\n [\n -97.13008502799451,\n 27.537299169977643\n ],\n [\n -97.92333884760556,\n 23.117355263556085\n ],\n [\n -96.20462223844827,\n 19.297357882373674\n ],\n [\n -91.0484724109764,\n 19.2349555158823\n ],\n [\n -89.32975580181909,\n 21.096419248573053\n ],\n [\n -84.63633736912035,\n 21.404467339404434\n ],\n [\n -80.9344862109354,\n 24.928609732834346\n ],\n [\n -83.7769790645417,\n 30.199837703950273\n ],\n [\n -92.50277108026334,\n 29.56938225072281\n ]\n ]\n ]\n }\n }\n ]\n}", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\n[Collection: {'Version': '2205', 'ShortName': 'SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205'}\nSpatial 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'NorthBoundingCoordinate': 79.917}]}}}\nTemporal coverage: {'RangeDateTime': {'EndingDateTime': '2021-09-03T00:00:00.000Z', 'BeginningDateTime': '2021-09-03T00:00:00.000Z'}}\nSize(MB): 0\nData: ['https://archive.podaac.earthdata.nasa.gov/podaac-ops-cumulus-protected/SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205/ssh_grids_v2205_2021090312.nc'], Collection: {'Version': '2205', 'ShortName': 'SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205'}\nSpatial coverage: {'HorizontalSpatialDomain': {'Geometry': {'BoundingRectangles': [{'WestBoundingCoordinate': 0.083, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': 180, 'NorthBoundingCoordinate': 79.917}, {'WestBoundingCoordinate': -180, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': -0.083, 'NorthBoundingCoordinate': 79.917}]}}}\nTemporal coverage: {'RangeDateTime': {'EndingDateTime': '2021-09-08T00:00:00.000Z', 'BeginningDateTime': '2021-09-08T00:00:00.000Z'}}\nSize(MB): 0\nData: ['https://archive.podaac.earthdata.nasa.gov/podaac-ops-cumulus-protected/SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205/ssh_grids_v2205_2021090812.nc'], Collection: {'Version': '2205', 'ShortName': 'SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205'}\nSpatial coverage: {'HorizontalSpatialDomain': {'Geometry': {'BoundingRectangles': [{'WestBoundingCoordinate': 0.083, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': 180, 'NorthBoundingCoordinate': 79.917}, {'WestBoundingCoordinate': -180, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': -0.083, 'NorthBoundingCoordinate': 79.917}]}}}\nTemporal coverage: {'RangeDateTime': {'EndingDateTime': '2021-09-13T00:00:00.000Z', 'BeginningDateTime': '2021-09-13T00:00:00.000Z'}}\nSize(MB): 0\nData: ['https://archive.podaac.earthdata.nasa.gov/podaac-ops-cumulus-protected/SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205/ssh_grids_v2205_2021091312.nc'], Collection: {'Version': '2205', 'ShortName': 'SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205'}\nSpatial coverage: {'HorizontalSpatialDomain': {'Geometry': {'BoundingRectangles': [{'WestBoundingCoordinate': 0.083, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': 180, 'NorthBoundingCoordinate': 79.917}, {'WestBoundingCoordinate': -180, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': -0.083, 'NorthBoundingCoordinate': 79.917}]}}}\nTemporal coverage: {'RangeDateTime': {'EndingDateTime': '2021-09-18T00:00:00.000Z', 'BeginningDateTime': '2021-09-18T00:00:00.000Z'}}\nSize(MB): 0\nData: ['https://archive.podaac.earthdata.nasa.gov/podaac-ops-cumulus-protected/SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205/ssh_grids_v2205_2021091812.nc'], Collection: {'Version': '2205', 'ShortName': 'SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205'}\nSpatial coverage: {'HorizontalSpatialDomain': {'Geometry': {'BoundingRectangles': [{'WestBoundingCoordinate': 0.083, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': 180, 'NorthBoundingCoordinate': 79.917}, {'WestBoundingCoordinate': -180, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': -0.083, 'NorthBoundingCoordinate': 79.917}]}}}\nTemporal coverage: {'RangeDateTime': {'EndingDateTime': '2021-09-23T00:00:00.000Z', 'BeginningDateTime': '2021-09-23T00:00:00.000Z'}}\nSize(MB): 0\nData: ['https://archive.podaac.earthdata.nasa.gov/podaac-ops-cumulus-protected/SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205/ssh_grids_v2205_2021092312.nc'], Collection: {'Version': '2205', 'ShortName': 'SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205'}\nSpatial coverage: {'HorizontalSpatialDomain': {'Geometry': {'BoundingRectangles': [{'WestBoundingCoordinate': 0.083, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': 180, 'NorthBoundingCoordinate': 79.917}, {'WestBoundingCoordinate': -180, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': -0.083, 'NorthBoundingCoordinate': 79.917}]}}}\nTemporal coverage: {'RangeDateTime': {'EndingDateTime': '2021-09-28T00:00:00.000Z', 'BeginningDateTime': '2021-09-28T00:00:00.000Z'}}\nSize(MB): 0\nData: ['https://archive.podaac.earthdata.nasa.gov/podaac-ops-cumulus-protected/SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205/ssh_grids_v2205_2021092812.nc']]\nYou're now authenticated with NASA Earthdata Login\nUsing token with expiration date: 08/07/2023\nUsing .netrc file for EDL\n Opening 18 granules, approx size: 0.0 GB\nSUBMITTING | : 0%| | 0/18 [00:00\nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\n", + "history_begin_time" : 1686241148687, + "history_end_time" : 1686241180394, + "history_notes" : null, + "history_process" : "cgvhiy", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "21dbj48ukb4", + "history_input" : "from earth_access_authenticate import *\n\nsst_short_name=\"MUR-JPL-L4-GLOB-v4.1\"\n\nrequest = Request(\n collection=Collection(id=sst_short_name),\n shape=geojson_path,\n temporal={\n 'start': dt.datetime(2021, 8, 1, 1),\n 'stop': dt.datetime(2021, 8, 1, 2) \n },\n)\njob_id = harmony_client.submit(request)\nharmony_client.wait_for_processing(job_id, show_progress=True)\ndata = harmony_client.result_json(job_id)\nresults = harmony_client.result_urls(job_id, link_type=LinkType.s3)\nurls = list(results)\nurl = urls[0]", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\n[Collection: {'Version': '2205', 'ShortName': 'SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205'}\nSpatial coverage: {'HorizontalSpatialDomain': {'Geometry': {'BoundingRectangles': [{'WestBoundingCoordinate': 0.083, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': 180, 'NorthBoundingCoordinate': 79.917}, {'WestBoundingCoordinate': -180, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': -0.083, 'NorthBoundingCoordinate': 79.917}]}}}\nTemporal coverage: {'RangeDateTime': {'EndingDateTime': '2021-07-05T00:00:00.000Z', 'BeginningDateTime': '2021-07-05T00:00:00.000Z'}}\nSize(MB): 0\nData: ['https://archive.podaac.earthdata.nasa.gov/podaac-ops-cumulus-protected/SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205/ssh_grids_v2205_2021070512.nc'], Collection: {'Version': '2205', 'ShortName': 'SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205'}\nSpatial coverage: {'HorizontalSpatialDomain': {'Geometry': {'BoundingRectangles': [{'WestBoundingCoordinate': 0.083, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': 180, 'NorthBoundingCoordinate': 79.917}, {'WestBoundingCoordinate': -180, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': -0.083, 'NorthBoundingCoordinate': 79.917}]}}}\nTemporal coverage: {'RangeDateTime': {'EndingDateTime': '2021-07-10T00:00:00.000Z', 'BeginningDateTime': '2021-07-10T00:00:00.000Z'}}\nSize(MB): 0\nData: ['https://archive.podaac.earthdata.nasa.gov/podaac-ops-cumulus-protected/SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205/ssh_grids_v2205_2021071012.nc'], Collection: {'Version': '2205', 'ShortName': 'SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205'}\nSpatial coverage: {'HorizontalSpatialDomain': {'Geometry': {'BoundingRectangles': [{'WestBoundingCoordinate': 0.083, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': 180, 'NorthBoundingCoordinate': 79.917}, {'WestBoundingCoordinate': -180, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': -0.083, 'NorthBoundingCoordinate': 79.917}]}}}\nTemporal coverage: {'RangeDateTime': {'EndingDateTime': '2021-07-15T00:00:00.000Z', 'BeginningDateTime': '2021-07-15T00:00:00.000Z'}}\nSize(MB): 0\nData: ['https://archive.podaac.earthdata.nasa.gov/podaac-ops-cumulus-protected/SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205/ssh_grids_v2205_2021071512.nc'], Collection: {'Version': '2205', 'ShortName': 'SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205'}\nSpatial coverage: {'HorizontalSpatialDomain': {'Geometry': {'BoundingRectangles': [{'WestBoundingCoordinate': 0.083, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': 180, 'NorthBoundingCoordinate': 79.917}, {'WestBoundingCoordinate': -180, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': -0.083, 'NorthBoundingCoordinate': 79.917}]}}}\nTemporal coverage: {'RangeDateTime': {'EndingDateTime': '2021-07-20T00:00:00.000Z', 'BeginningDateTime': '2021-07-20T00:00:00.000Z'}}\nSize(MB): 0\nData: ['https://archive.podaac.earthdata.nasa.gov/podaac-ops-cumulus-protected/SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205/ssh_grids_v2205_2021072012.nc'], Collection: {'Version': '2205', 'ShortName': 'SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205'}\nSpatial coverage: {'HorizontalSpatialDomain': {'Geometry': {'BoundingRectangles': [{'WestBoundingCoordinate': 0.083, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': 180, 'NorthBoundingCoordinate': 79.917}, {'WestBoundingCoordinate': -180, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': -0.083, 'NorthBoundingCoordinate': 79.917}]}}}\nTemporal coverage: {'RangeDateTime': {'EndingDateTime': '2021-07-25T00:00:00.000Z', 'BeginningDateTime': '2021-07-25T00:00:00.000Z'}}\nSize(MB): 0\nData: ['https://archive.podaac.earthdata.nasa.gov/podaac-ops-cumulus-protected/SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205/ssh_grids_v2205_2021072512.nc'], Collection: {'Version': '2205', 'ShortName': 'SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205'}\nSpatial coverage: {'HorizontalSpatialDomain': {'Geometry': {'BoundingRectangles': [{'WestBoundingCoordinate': 0.083, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': 180, 'NorthBoundingCoordinate': 79.917}, {'WestBoundingCoordinate': -180, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': -0.083, 'NorthBoundingCoordinate': 79.917}]}}}\nTemporal coverage: {'RangeDateTime': {'EndingDateTime': '2021-07-30T00:00:00.000Z', 'BeginningDateTime': '2021-07-30T00:00:00.000Z'}}\nSize(MB): 0\nData: ['https://archive.podaac.earthdata.nasa.gov/podaac-ops-cumulus-protected/SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205/ssh_grids_v2205_2021073012.nc'], Collection: {'Version': '2205', 'ShortName': 'SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205'}\nSpatial coverage: {'HorizontalSpatialDomain': {'Geometry': {'BoundingRectangles': [{'WestBoundingCoordinate': 0.083, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': 180, 'NorthBoundingCoordinate': 79.917}, {'WestBoundingCoordinate': -180, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': -0.083, 'NorthBoundingCoordinate': 79.917}]}}}\nTemporal coverage: {'RangeDateTime': {'EndingDateTime': '2021-08-04T00:00:00.000Z', 'BeginningDateTime': '2021-08-04T00:00:00.000Z'}}\nSize(MB): 0\nData: ['https://archive.podaac.earthdata.nasa.gov/podaac-ops-cumulus-protected/SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205/ssh_grids_v2205_2021080412.nc'], Collection: {'Version': '2205', 'ShortName': 'SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205'}\nSpatial coverage: {'HorizontalSpatialDomain': {'Geometry': {'BoundingRectangles': [{'WestBoundingCoordinate': 0.083, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': 180, 'NorthBoundingCoordinate': 79.917}, {'WestBoundingCoordinate': -180, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': -0.083, 'NorthBoundingCoordinate': 79.917}]}}}\nTemporal coverage: {'RangeDateTime': {'EndingDateTime': '2021-08-09T00:00:00.000Z', 'BeginningDateTime': '2021-08-09T00:00:00.000Z'}}\nSize(MB): 0\nData: ['https://archive.podaac.earthdata.nasa.gov/podaac-ops-cumulus-protected/SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205/ssh_grids_v2205_2021080912.nc'], Collection: {'Version': '2205', 'ShortName': 'SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205'}\nSpatial coverage: {'HorizontalSpatialDomain': {'Geometry': {'BoundingRectangles': [{'WestBoundingCoordinate': 0.083, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': 180, 'NorthBoundingCoordinate': 79.917}, {'WestBoundingCoordinate': -180, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': -0.083, 'NorthBoundingCoordinate': 79.917}]}}}\nTemporal coverage: {'RangeDateTime': {'EndingDateTime': '2021-08-14T00:00:00.000Z', 'BeginningDateTime': '2021-08-14T00:00:00.000Z'}}\nSize(MB): 0\nData: ['https://archive.podaac.earthdata.nasa.gov/podaac-ops-cumulus-protected/SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205/ssh_grids_v2205_2021081412.nc'], Collection: {'Version': '2205', 'ShortName': 'SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205'}\nSpatial coverage: {'HorizontalSpatialDomain': {'Geometry': {'BoundingRectangles': [{'WestBoundingCoordinate': 0.083, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': 180, 'NorthBoundingCoordinate': 79.917}, {'WestBoundingCoordinate': -180, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': -0.083, 'NorthBoundingCoordinate': 79.917}]}}}\nTemporal coverage: {'RangeDateTime': {'EndingDateTime': '2021-08-19T00:00:00.000Z', 'BeginningDateTime': '2021-08-19T00:00:00.000Z'}}\nSize(MB): 0\nData: ['https://archive.podaac.earthdata.nasa.gov/podaac-ops-cumulus-protected/SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205/ssh_grids_v2205_2021081912.nc'], Collection: {'Version': '2205', 'ShortName': 'SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205'}\nSpatial coverage: {'HorizontalSpatialDomain': {'Geometry': {'BoundingRectangles': [{'WestBoundingCoordinate': 0.083, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': 180, 'NorthBoundingCoordinate': 79.917}, {'WestBoundingCoordinate': -180, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': -0.083, 'NorthBoundingCoordinate': 79.917}]}}}\nTemporal coverage: {'RangeDateTime': {'EndingDateTime': '2021-08-24T00:00:00.000Z', 'BeginningDateTime': '2021-08-24T00:00:00.000Z'}}\nSize(MB): 0\nData: ['https://archive.podaac.earthdata.nasa.gov/podaac-ops-cumulus-protected/SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205/ssh_grids_v2205_2021082412.nc'], Collection: {'Version': '2205', 'ShortName': 'SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205'}\nSpatial coverage: {'HorizontalSpatialDomain': {'Geometry': {'BoundingRectangles': [{'WestBoundingCoordinate': 0.083, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': 180, 'NorthBoundingCoordinate': 79.917}, {'WestBoundingCoordinate': -180, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': -0.083, 'NorthBoundingCoordinate': 79.917}]}}}\nTemporal coverage: {'RangeDateTime': {'EndingDateTime': '2021-08-29T00:00:00.000Z', 'BeginningDateTime': '2021-08-29T00:00:00.000Z'}}\nSize(MB): 0\nData: ['https://archive.podaac.earthdata.nasa.gov/podaac-ops-cumulus-protected/SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205/ssh_grids_v2205_2021082912.nc'], Collection: {'Version': '2205', 'ShortName': 'SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205'}\nSpatial coverage: {'HorizontalSpatialDomain': {'Geometry': {'BoundingRectangles': [{'WestBoundingCoordinate': 0.083, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': 180, 'NorthBoundingCoordinate': 79.917}, {'WestBoundingCoordinate': -180, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': -0.083, 'NorthBoundingCoordinate': 79.917}]}}}\nTemporal coverage: {'RangeDateTime': {'EndingDateTime': '2021-09-03T00:00:00.000Z', 'BeginningDateTime': '2021-09-03T00:00:00.000Z'}}\nSize(MB): 0\nData: ['https://archive.podaac.earthdata.nasa.gov/podaac-ops-cumulus-protected/SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205/ssh_grids_v2205_2021090312.nc'], Collection: {'Version': '2205', 'ShortName': 'SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205'}\nSpatial coverage: {'HorizontalSpatialDomain': {'Geometry': {'BoundingRectangles': [{'WestBoundingCoordinate': 0.083, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': 180, 'NorthBoundingCoordinate': 79.917}, {'WestBoundingCoordinate': -180, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': -0.083, 'NorthBoundingCoordinate': 79.917}]}}}\nTemporal coverage: {'RangeDateTime': {'EndingDateTime': '2021-09-08T00:00:00.000Z', 'BeginningDateTime': '2021-09-08T00:00:00.000Z'}}\nSize(MB): 0\nData: ['https://archive.podaac.earthdata.nasa.gov/podaac-ops-cumulus-protected/SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205/ssh_grids_v2205_2021090812.nc'], Collection: {'Version': '2205', 'ShortName': 'SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205'}\nSpatial coverage: {'HorizontalSpatialDomain': {'Geometry': {'BoundingRectangles': [{'WestBoundingCoordinate': 0.083, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': 180, 'NorthBoundingCoordinate': 79.917}, {'WestBoundingCoordinate': -180, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': -0.083, 'NorthBoundingCoordinate': 79.917}]}}}\nTemporal coverage: {'RangeDateTime': {'EndingDateTime': '2021-09-13T00:00:00.000Z', 'BeginningDateTime': '2021-09-13T00:00:00.000Z'}}\nSize(MB): 0\nData: ['https://archive.podaac.earthdata.nasa.gov/podaac-ops-cumulus-protected/SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205/ssh_grids_v2205_2021091312.nc'], Collection: {'Version': '2205', 'ShortName': 'SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205'}\nSpatial coverage: {'HorizontalSpatialDomain': {'Geometry': {'BoundingRectangles': [{'WestBoundingCoordinate': 0.083, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': 180, 'NorthBoundingCoordinate': 79.917}, {'WestBoundingCoordinate': -180, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': -0.083, 'NorthBoundingCoordinate': 79.917}]}}}\nTemporal coverage: {'RangeDateTime': {'EndingDateTime': '2021-09-18T00:00:00.000Z', 'BeginningDateTime': '2021-09-18T00:00:00.000Z'}}\nSize(MB): 0\nData: ['https://archive.podaac.earthdata.nasa.gov/podaac-ops-cumulus-protected/SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205/ssh_grids_v2205_2021091812.nc'], Collection: {'Version': '2205', 'ShortName': 'SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205'}\nSpatial coverage: {'HorizontalSpatialDomain': {'Geometry': {'BoundingRectangles': [{'WestBoundingCoordinate': 0.083, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': 180, 'NorthBoundingCoordinate': 79.917}, {'WestBoundingCoordinate': -180, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': -0.083, 'NorthBoundingCoordinate': 79.917}]}}}\nTemporal coverage: {'RangeDateTime': {'EndingDateTime': '2021-09-23T00:00:00.000Z', 'BeginningDateTime': '2021-09-23T00:00:00.000Z'}}\nSize(MB): 0\nData: ['https://archive.podaac.earthdata.nasa.gov/podaac-ops-cumulus-protected/SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205/ssh_grids_v2205_2021092312.nc'], Collection: {'Version': '2205', 'ShortName': 'SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205'}\nSpatial coverage: {'HorizontalSpatialDomain': {'Geometry': {'BoundingRectangles': [{'WestBoundingCoordinate': 0.083, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': 180, 'NorthBoundingCoordinate': 79.917}, {'WestBoundingCoordinate': -180, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': -0.083, 'NorthBoundingCoordinate': 79.917}]}}}\nTemporal coverage: {'RangeDateTime': {'EndingDateTime': '2021-09-28T00:00:00.000Z', 'BeginningDateTime': '2021-09-28T00:00:00.000Z'}}\nSize(MB): 0\nData: ['https://archive.podaac.earthdata.nasa.gov/podaac-ops-cumulus-protected/SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205/ssh_grids_v2205_2021092812.nc']]\nYou're now authenticated with NASA Earthdata Login\nUsing token with expiration date: 08/07/2023\nUsing .netrc file for EDL\n Opening 18 granules, approx size: 0.0 GB\nSUBMITTING | : 0%| | 0/18 [00:00\n shape=geojson_path,\nNameError: name 'geojson_path' is not defined\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\n", + "history_begin_time" : 1686241182329, + "history_end_time" : 1686241204322, + "history_notes" : null, + "history_process" : "v2ow93", + "host_id" : "100001", + "indicator" : "Failed" +},{ + "history_id" : "58l7pi2q4u8", + "history_input" : "from connect_harmony_client import *\n\ncreds = harmony_client.aws_credentials()\ns3_fs = s3fs.S3FileSystem(\n key=creds['aws_access_key_id'],\n secret=creds['aws_secret_access_key'],\n token=creds['aws_session_token'],\n client_kwargs={'region_name':'us-west-2'},\n)\nf = s3_fs.open(url, mode='rb')\nds = xr.open_dataset(f)\nds.analysed_sst.plot();", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\n[Collection: {'Version': '2205', 'ShortName': 'SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205'}\nSpatial coverage: {'HorizontalSpatialDomain': {'Geometry': {'BoundingRectangles': [{'WestBoundingCoordinate': 0.083, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': 180, 'NorthBoundingCoordinate': 79.917}, {'WestBoundingCoordinate': -180, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': -0.083, 'NorthBoundingCoordinate': 79.917}]}}}\nTemporal coverage: {'RangeDateTime': {'EndingDateTime': '2021-07-05T00:00:00.000Z', 'BeginningDateTime': '2021-07-05T00:00:00.000Z'}}\nSize(MB): 0\nData: ['https://archive.podaac.earthdata.nasa.gov/podaac-ops-cumulus-protected/SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205/ssh_grids_v2205_2021070512.nc'], Collection: {'Version': '2205', 'ShortName': 'SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205'}\nSpatial coverage: {'HorizontalSpatialDomain': {'Geometry': {'BoundingRectangles': [{'WestBoundingCoordinate': 0.083, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': 180, 'NorthBoundingCoordinate': 79.917}, {'WestBoundingCoordinate': -180, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': -0.083, 'NorthBoundingCoordinate': 79.917}]}}}\nTemporal coverage: {'RangeDateTime': {'EndingDateTime': '2021-07-10T00:00:00.000Z', 'BeginningDateTime': '2021-07-10T00:00:00.000Z'}}\nSize(MB): 0\nData: ['https://archive.podaac.earthdata.nasa.gov/podaac-ops-cumulus-protected/SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205/ssh_grids_v2205_2021071012.nc'], Collection: {'Version': '2205', 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'ShortName': 'SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205'}\nSpatial coverage: {'HorizontalSpatialDomain': {'Geometry': {'BoundingRectangles': [{'WestBoundingCoordinate': 0.083, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': 180, 'NorthBoundingCoordinate': 79.917}, {'WestBoundingCoordinate': -180, 'SouthBoundingCoordinate': -79.917, 'EastBoundingCoordinate': -0.083, 'NorthBoundingCoordinate': 79.917}]}}}\nTemporal coverage: {'RangeDateTime': {'EndingDateTime': '2021-09-28T00:00:00.000Z', 'BeginningDateTime': '2021-09-28T00:00:00.000Z'}}\nSize(MB): 0\nData: ['https://archive.podaac.earthdata.nasa.gov/podaac-ops-cumulus-protected/SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205/ssh_grids_v2205_2021092812.nc']]\nYou're now authenticated with NASA Earthdata Login\nUsing token with expiration date: 08/07/2023\nUsing .netrc file for EDL\n Opening 18 granules, approx size: 0.0 GB\nSUBMITTING | : 0%| | 0/18 [00:00\n from connect_harmony_client import *\n File \"/home/jovyan/gw-workspace/58l7pi2q4u8/connect_harmony_client.py\", line 7, in \n shape=geojson_path,\nNameError: name 'geojson_path' is not defined\n", + "history_begin_time" : 1686241205418, + "history_end_time" : 1686241229124, + "history_notes" : null, + "history_process" : "1b4ko0", + "host_id" : "100001", + "indicator" : "Failed" +}] diff --git a/history/b70aawjt8z4isn1dwy.json b/history/b70aawjt8z4isn1dwy.json new file mode 100644 index 0000000..e8b23cd --- /dev/null +++ b/history/b70aawjt8z4isn1dwy.json @@ -0,0 +1,31 @@ +[{ + "history_id" : "617pj1d8nis", + "history_input" : "No code saved", + "history_output" : "Skipped", + "history_begin_time" : 1687332369776, + "history_end_time" : 1687332369776, + "history_notes" : null, + "history_process" : "wttkvt", + "host_id" : "100001", + "indicator" : "Skipped" +},{ + "history_id" : "zzcxtngjbdu", + "history_input" : "#!/bin/bash\npip3 install geopandas earthaccess xarray harmony-py s3fs\n", + "history_output" : "Defaulting to user installation because normal site-packages is not writeable\nRequirement already satisfied: geopandas in /Users/joe/Library/Python/3.9/lib/python/site-packages (0.13.2)\nRequirement already satisfied: earthaccess in /Users/joe/Library/Python/3.9/lib/python/site-packages (0.5.2)\nRequirement already satisfied: xarray in /Users/joe/Library/Python/3.9/lib/python/site-packages (2023.5.0)\nRequirement already satisfied: harmony-py in /Users/joe/Library/Python/3.9/lib/python/site-packages (0.4.9)\nRequirement already satisfied: s3fs in /Users/joe/Library/Python/3.9/lib/python/site-packages (2023.6.0)\nRequirement already satisfied: pandas>=1.1.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from geopandas) (2.0.2)\nRequirement already satisfied: fiona>=1.8.19 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from geopandas) (1.9.4.post1)\nRequirement already satisfied: shapely>=1.7.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from geopandas) (2.0.1)\nRequirement already satisfied: packaging in /Users/joe/Library/Python/3.9/lib/python/site-packages (from geopandas) (21.3)\nRequirement already satisfied: pyproj>=3.0.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from geopandas) (3.6.0)\nRequirement already satisfied: multimethod>=1.8 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from earthaccess) (1.9.1)\nRequirement already satisfied: tinynetrc<2.0.0,>=1.3.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from earthaccess) (1.3.1)\nRequirement already satisfied: python-cmr>=0.7 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from earthaccess) (0.7.0)\nRequirement already satisfied: requests<3.0.0,>=2.26 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from earthaccess) (2.28.2)\nRequirement already satisfied: fsspec>=2022.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from earthaccess) (2023.6.0)\nRequirement already satisfied: pqdm>=0.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from earthaccess) (0.2.0)\nRequirement already satisfied: numpy>=1.21 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from xarray) (1.24.3)\nRequirement already satisfied: progressbar2~=3.55.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from harmony-py) (3.55.0)\nRequirement already satisfied: sphinxcontrib-napoleon~=0.7 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from harmony-py) (0.7)\nRequirement already satisfied: python-dotenv~=0.20.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from harmony-py) (0.20.0)\nRequirement already satisfied: curlify~=2.2.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from harmony-py) (2.2.1)\nRequirement already satisfied: python-dateutil~=2.8.2 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from harmony-py) (2.8.2)\nRequirement already satisfied: aiohttp!=4.0.0a0,!=4.0.0a1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from s3fs) (3.8.4)\nRequirement already satisfied: aiobotocore~=2.5.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from s3fs) (2.5.0)\nRequirement already satisfied: botocore<1.29.77,>=1.29.76 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiobotocore~=2.5.0->s3fs) (1.29.76)\nRequirement already satisfied: wrapt>=1.10.10 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiobotocore~=2.5.0->s3fs) (1.15.0)\nRequirement already satisfied: aioitertools>=0.5.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiobotocore~=2.5.0->s3fs) (0.11.0)\nRequirement already satisfied: aiosignal>=1.1.2 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs) (1.3.1)\nRequirement already satisfied: attrs>=17.3.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs) (23.1.0)\nRequirement already satisfied: frozenlist>=1.1.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs) (1.3.3)\nRequirement already satisfied: charset-normalizer<4.0,>=2.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs) (3.1.0)\nRequirement already satisfied: multidict<7.0,>=4.5 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs) (6.0.4)\nRequirement already satisfied: async-timeout<5.0,>=4.0.0a3 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs) (4.0.2)\nRequirement already satisfied: yarl<2.0,>=1.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs) (1.9.2)\nRequirement already satisfied: typing_extensions>=4.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aioitertools>=0.5.1->aiobotocore~=2.5.0->s3fs) (4.6.3)\nRequirement already satisfied: urllib3<1.27,>=1.25.4 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from botocore<1.29.77,>=1.29.76->aiobotocore~=2.5.0->s3fs) (1.26.15)\nRequirement already satisfied: jmespath<2.0.0,>=0.7.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from botocore<1.29.77,>=1.29.76->aiobotocore~=2.5.0->s3fs) (1.0.1)\nRequirement already satisfied: six in /Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.9/lib/python3.9/site-packages (from fiona>=1.8.19->geopandas) (1.15.0)\nRequirement already satisfied: cligj>=0.5 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from fiona>=1.8.19->geopandas) (0.7.2)\nRequirement already satisfied: click~=8.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from fiona>=1.8.19->geopandas) (8.1.3)\nRequirement already satisfied: importlib-metadata in /Users/joe/Library/Python/3.9/lib/python/site-packages (from fiona>=1.8.19->geopandas) (6.6.0)\nRequirement already satisfied: click-plugins>=1.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from fiona>=1.8.19->geopandas) (1.1.1)\nRequirement already satisfied: certifi in /Users/joe/Library/Python/3.9/lib/python/site-packages (from fiona>=1.8.19->geopandas) (2022.12.7)\nRequirement already satisfied: pyparsing!=3.0.5,>=2.0.2 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from packaging->geopandas) (3.0.9)\nRequirement already satisfied: tzdata>=2022.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from pandas>=1.1.0->geopandas) (2023.3)\nRequirement already satisfied: pytz>=2020.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from pandas>=1.1.0->geopandas) (2023.3)\nRequirement already satisfied: bounded-pool-executor in /Users/joe/Library/Python/3.9/lib/python/site-packages (from pqdm>=0.1->earthaccess) (0.0.3)\nRequirement already satisfied: tqdm in /Users/joe/Library/Python/3.9/lib/python/site-packages (from pqdm>=0.1->earthaccess) (4.65.0)\nRequirement already satisfied: python-utils>=2.3.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from progressbar2~=3.55.0->harmony-py) (3.6.1)\nRequirement already satisfied: idna<4,>=2.5 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from requests<3.0.0,>=2.26->earthaccess) (3.4)\nRequirement already satisfied: pockets>=0.3 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from sphinxcontrib-napoleon~=0.7->harmony-py) (0.9.1)\nRequirement already satisfied: zipp>=0.5 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from importlib-metadata->fiona>=1.8.19->geopandas) (3.15.0)\nWARNING: You are using pip version 21.2.4; however, version 23.1.2 is available.\nYou should consider upgrading via the '/Applications/Xcode.app/Contents/Developer/usr/bin/python3 -m pip install --upgrade pip' command.\n", + "history_begin_time" : 1687332370741, + "history_end_time" : 1687332373198, + "history_notes" : null, + "history_process" : "ru79i2", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "agb7rrec49u", + "history_input" : "from earth_data_utils import *\n\ndef search_ssh():\n auth_earthaccess()\n results = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-09-30\"),\n )\n return results\n\ndef plot_subset(ds_subset):\n ds_subset.plot(figsize=(12,6), x='Longitude', y='Latitude')\n home_dir = os.path.expanduser('~')\n \n file_name = f\"geoweaver_plot_{str(uuid.uuid4())}.png\"\n save_file_path = os.path.join(home_dir, file_name)\n plt.savefig(save_file_path)\n print(f\"new figure is saved to {save_file_path}\")\n\nwith get_dataset(search_ssh()) as ds:\n subset = ds[\"SLA\"].sel(Latitude=slice(-79, 79), \n Longitude=slice(100,300)).std('Time')\n plot_subset(subset)\n", + "history_output" : "Running", + "history_begin_time" : 1687332374872, + "history_end_time" : 1687332374761, + "history_notes" : null, + "history_process" : "e57twj", + "host_id" : "100001", + "indicator" : "Running" +}] diff --git a/history/b8oEcCvvIU6KaKiYoT.json b/history/b8oEcCvvIU6KaKiYoT.json new file mode 100644 index 0000000..2715439 --- /dev/null +++ b/history/b8oEcCvvIU6KaKiYoT.json @@ -0,0 +1,51 @@ +[{ + "history_id" : "5dihhe0htym", + "history_input" : "\n\n\n# Suppress warnings\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\n", + "history_begin_time" : 1686242727905, + "history_end_time" : 1686242736398, + "history_notes" : null, + "history_process" : "wttkvt", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "vsed2t9rwoh", + "history_input" : "from earth_data_utils import *\n\nssh_short_name = \"SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205\"\n\nresults = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-09-30\"),\n)", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\n", + "history_begin_time" : 1686242737933, + "history_end_time" : 1686242753536, + "history_notes" : null, + "history_process" : "yvo1ds", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "p9fe0kwes52", + "history_input" : "from search_data import *\n\nauth = earthaccess.login(strategy=\"netrc\", persist=True)\nds = xr.open_mfdataset(earthaccess.open(results))\nds_subset = ds['SLA'].sel(Latitude=slice(15.8, 35.9), Longitude=slice(234.5,260.5)) \ngdf = {\n \"type\": \"FeatureCollection\",\n \"features\": [\n {\n \"type\": \"Feature\",\n \"properties\": {},\n \"geometry\": {\n \"type\": \"Polygon\",\n \"coordinates\": [\n [\n [\n -92.50277108026334,\n 29.56938225072281\n ],\n [\n -97.13008502799451,\n 27.537299169977643\n ],\n [\n -97.92333884760556,\n 23.117355263556085\n ],\n [\n -96.20462223844827,\n 19.297357882373674\n ],\n [\n -91.0484724109764,\n 19.2349555158823\n ],\n [\n -89.32975580181909,\n 21.096419248573053\n ],\n [\n -84.63633736912035,\n 21.404467339404434\n ],\n [\n -80.9344862109354,\n 24.928609732834346\n ],\n [\n -83.7769790645417,\n 30.199837703950273\n ],\n [\n -92.50277108026334,\n 29.56938225072281\n ]\n ]\n ]\n }\n }\n ]\n}", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\nYou're now authenticated with NASA Earthdata Login\nUsing token with expiration date: 08/07/2023\nUsing .netrc file for EDL\n Opening 18 granules, approx size: 0.0 GB\nSUBMITTING | : 0%| | 0/18 [00:00\nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\n", + "history_begin_time" : 1686242755409, + "history_end_time" : 1686242789431, + "history_notes" : null, + "history_process" : "cgvhiy", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "f8kxyefon3c", + "history_input" : "from earth_access_authenticate import *\n\nsst_short_name=\"MUR-JPL-L4-GLOB-v4.1\"\n\nharmony_client = Client()\nrequest = Request(\n collection=Collection(id=sst_short_name),\n shape=gdf,\n temporal={\n 'start': dt.datetime(2021, 8, 1, 1),\n 'stop': dt.datetime(2021, 8, 1, 2) \n },\n)\njob_id = harmony_client.submit(request)\nharmony_client.wait_for_processing(job_id, show_progress=True)\ndata = harmony_client.result_json(job_id)\nresults = harmony_client.result_urls(job_id, link_type=LinkType.s3)\nurls = list(results)\nurl = urls[0]", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\nYou're now authenticated with NASA Earthdata Login\nUsing token with expiration date: 08/07/2023\nUsing .netrc file for EDL\n Opening 18 granules, approx size: 0.0 GB\nSUBMITTING | : 0%| | 0/18 [00:00\n job_id = harmony_client.submit(request)\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/harmony/harmony.py\", line 713, in submit\n if not request.is_valid():\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/harmony/harmony.py\", line 335, in is_valid\n return len(self.error_messages()) == 0\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/harmony/harmony.py\", line 357, in error_messages\n shape_msgs = self._shape_error_messages(self.shape)\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/harmony/harmony.py\", line 341, in _shape_error_messages\n if not os.path.exists(shape):\n File \"/srv/conda/envs/notebook/lib/python3.9/genericpath.py\", line 19, in exists\n os.stat(path)\nTypeError: stat: path should be string, bytes, os.PathLike or integer, not dict\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\n", + "history_begin_time" : 1686242790617, + "history_end_time" : 1686242814521, + "history_notes" : null, + "history_process" : "v2ow93", + "host_id" : "100001", + "indicator" : "Failed" +},{ + "history_id" : "v4ntpteua2l", + "history_input" : "from connect_harmony_client import *\n\ncreds = harmony_client.aws_credentials()\ns3_fs = s3fs.S3FileSystem(\n key=creds['aws_access_key_id'],\n secret=creds['aws_secret_access_key'],\n token=creds['aws_session_token'],\n client_kwargs={'region_name':'us-west-2'},\n)\nf = s3_fs.open(url, mode='rb')\nds = xr.open_dataset(f)\n#ds.analysed_sst.plot()", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\nYou're now authenticated with NASA Earthdata Login\nUsing token with expiration date: 08/07/2023\nUsing .netrc file for EDL\n Opening 18 granules, approx size: 0.0 GB\nSUBMITTING | : 0%| | 0/18 [00:00\n from connect_harmony_client import *\n File \"/home/jovyan/gw-workspace/v4ntpteua2l/connect_harmony_client.py\", line 14, in \n job_id = harmony_client.submit(request)\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/harmony/harmony.py\", line 713, in submit\n if not request.is_valid():\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/harmony/harmony.py\", line 335, in is_valid\n return len(self.error_messages()) == 0\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/harmony/harmony.py\", line 357, in error_messages\n shape_msgs = self._shape_error_messages(self.shape)\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/harmony/harmony.py\", line 341, in _shape_error_messages\n if not os.path.exists(shape):\n File \"/srv/conda/envs/notebook/lib/python3.9/genericpath.py\", line 19, in exists\n os.stat(path)\nTypeError: stat: path should be string, bytes, os.PathLike or integer, not dict\n", + "history_begin_time" : 1686242816443, + "history_end_time" : 1686242839291, + "history_notes" : null, + "history_process" : "1b4ko0", + "host_id" : "100001", + "indicator" : "Failed" +}] diff --git a/history/bv0wvvajfbrscyj6pm.json b/history/bv0wvvajfbrscyj6pm.json new file mode 100644 index 0000000..a282429 --- /dev/null +++ b/history/bv0wvvajfbrscyj6pm.json @@ -0,0 +1,41 @@ +[{ + "history_id" : "1h6mwhjgffr", + "history_input" : "No code saved", + "history_output" : "Skipped", + "history_begin_time" : 1687330905835, + "history_end_time" : 1687330905835, + "history_notes" : null, + "history_process" : "wttkvt", + "host_id" : "100001", + "indicator" : "Skipped" +},{ + "history_id" : "ced80h6vr3r", + "history_input" : "#!/bin/bash\npip3 install geopandas earthaccess xarray harmony-py s3fs\n", + "history_output" : "Defaulting to user installation because normal site-packages is not writeable\nRequirement already satisfied: geopandas in /Users/joe/Library/Python/3.9/lib/python/site-packages (0.13.2)\nRequirement already satisfied: earthaccess in /Users/joe/Library/Python/3.9/lib/python/site-packages (0.5.2)\nRequirement already satisfied: xarray in /Users/joe/Library/Python/3.9/lib/python/site-packages (2023.5.0)\nRequirement already satisfied: harmony-py in /Users/joe/Library/Python/3.9/lib/python/site-packages (0.4.9)\nRequirement already satisfied: s3fs in /Users/joe/Library/Python/3.9/lib/python/site-packages (2023.6.0)\nRequirement already satisfied: packaging in /Users/joe/Library/Python/3.9/lib/python/site-packages (from geopandas) (21.3)\nRequirement already satisfied: shapely>=1.7.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from geopandas) (2.0.1)\nRequirement already satisfied: pandas>=1.1.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from geopandas) (2.0.2)\nRequirement already satisfied: fiona>=1.8.19 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from geopandas) (1.9.4.post1)\nRequirement already satisfied: pyproj>=3.0.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from geopandas) (3.6.0)\nRequirement already satisfied: multimethod>=1.8 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from earthaccess) (1.9.1)\nRequirement already satisfied: tinynetrc<2.0.0,>=1.3.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from earthaccess) (1.3.1)\nRequirement already satisfied: requests<3.0.0,>=2.26 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from earthaccess) (2.28.2)\nRequirement already satisfied: python-cmr>=0.7 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from earthaccess) (0.7.0)\nRequirement already satisfied: pqdm>=0.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from earthaccess) (0.2.0)\nRequirement already satisfied: fsspec>=2022.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from earthaccess) (2023.6.0)\nRequirement already satisfied: numpy>=1.21 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from xarray) (1.24.3)\nRequirement already satisfied: progressbar2~=3.55.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from harmony-py) (3.55.0)\nRequirement already satisfied: sphinxcontrib-napoleon~=0.7 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from harmony-py) (0.7)\nRequirement already satisfied: python-dotenv~=0.20.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from harmony-py) (0.20.0)\nRequirement already satisfied: python-dateutil~=2.8.2 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from harmony-py) (2.8.2)\nRequirement already satisfied: curlify~=2.2.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from harmony-py) (2.2.1)\nRequirement already satisfied: aiobotocore~=2.5.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from s3fs) (2.5.0)\nRequirement already satisfied: aiohttp!=4.0.0a0,!=4.0.0a1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from s3fs) (3.8.4)\nRequirement already satisfied: aioitertools>=0.5.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiobotocore~=2.5.0->s3fs) (0.11.0)\nRequirement already satisfied: botocore<1.29.77,>=1.29.76 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiobotocore~=2.5.0->s3fs) (1.29.76)\nRequirement already satisfied: wrapt>=1.10.10 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiobotocore~=2.5.0->s3fs) (1.15.0)\nRequirement already satisfied: attrs>=17.3.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs) (23.1.0)\nRequirement already satisfied: charset-normalizer<4.0,>=2.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs) (3.1.0)\nRequirement already satisfied: multidict<7.0,>=4.5 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs) (6.0.4)\nRequirement already satisfied: frozenlist>=1.1.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs) (1.3.3)\nRequirement already satisfied: async-timeout<5.0,>=4.0.0a3 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs) (4.0.2)\nRequirement already satisfied: yarl<2.0,>=1.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs) (1.9.2)\nRequirement already satisfied: aiosignal>=1.1.2 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs) (1.3.1)\nRequirement already satisfied: typing_extensions>=4.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aioitertools>=0.5.1->aiobotocore~=2.5.0->s3fs) (4.6.3)\nRequirement already satisfied: urllib3<1.27,>=1.25.4 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from botocore<1.29.77,>=1.29.76->aiobotocore~=2.5.0->s3fs) (1.26.15)\nRequirement already satisfied: jmespath<2.0.0,>=0.7.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from botocore<1.29.77,>=1.29.76->aiobotocore~=2.5.0->s3fs) (1.0.1)\nRequirement already satisfied: certifi in /Users/joe/Library/Python/3.9/lib/python/site-packages (from fiona>=1.8.19->geopandas) (2022.12.7)\nRequirement already satisfied: click~=8.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from fiona>=1.8.19->geopandas) (8.1.3)\nRequirement already satisfied: cligj>=0.5 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from fiona>=1.8.19->geopandas) (0.7.2)\nRequirement already satisfied: six in /Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.9/lib/python3.9/site-packages (from fiona>=1.8.19->geopandas) (1.15.0)\nRequirement already satisfied: click-plugins>=1.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from fiona>=1.8.19->geopandas) (1.1.1)\nRequirement already satisfied: importlib-metadata in /Users/joe/Library/Python/3.9/lib/python/site-packages (from fiona>=1.8.19->geopandas) (6.6.0)\nRequirement already satisfied: pyparsing!=3.0.5,>=2.0.2 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from packaging->geopandas) (3.0.9)\nRequirement already satisfied: pytz>=2020.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from pandas>=1.1.0->geopandas) (2023.3)\nRequirement already satisfied: tzdata>=2022.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from pandas>=1.1.0->geopandas) (2023.3)\nRequirement already satisfied: tqdm in /Users/joe/Library/Python/3.9/lib/python/site-packages (from pqdm>=0.1->earthaccess) (4.65.0)\nRequirement already satisfied: bounded-pool-executor in /Users/joe/Library/Python/3.9/lib/python/site-packages (from pqdm>=0.1->earthaccess) (0.0.3)\nRequirement already satisfied: python-utils>=2.3.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from progressbar2~=3.55.0->harmony-py) (3.6.1)\nRequirement already satisfied: idna<4,>=2.5 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from requests<3.0.0,>=2.26->earthaccess) (3.4)\nRequirement already satisfied: pockets>=0.3 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from sphinxcontrib-napoleon~=0.7->harmony-py) (0.9.1)\nRequirement already satisfied: zipp>=0.5 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from importlib-metadata->fiona>=1.8.19->geopandas) (3.15.0)\nWARNING: You are using pip version 21.2.4; however, version 23.1.2 is available.\nYou should consider upgrading via the '/Applications/Xcode.app/Contents/Developer/usr/bin/python3 -m pip install --upgrade pip' command.\n", + "history_begin_time" : 1687330906800, + "history_end_time" : 1687330909250, + "history_notes" : null, + "history_process" : "ru79i2", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "m3t1sdcsl3k", + "history_input" : "from earth_data_utils import *\n\ndef search_and_get_sst():\n auth_earthaccess()\n results = earthaccess.search_data(\n short_name=sst_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-07-02\"),\n )\n print(\"found results: \", results)\n return results\n\ndef plot_subset(ds_subset):\n ds_subset.plot(figsize=(12,6), x='lon', y='lat')\n home_dir = os.path.expanduser('~')\n \n file_name = f\"geoweaver_plot_{str(uuid.uuid4())}.png\"\n save_file_path = os.path.join(home_dir, file_name)\n plt.savefig(save_file_path)\n print(f\"new figure is saved to {save_file_path}\")\n\nwith get_dataset(search_and_get_sst()) as ds:\n subset = ds[\"analysed_sst\"].sel(lat=slice(37, 47), \n lon=slice(-70,-50)).std('time')\n plot_subset(subset)\n\n", + "history_output" : "You're now authenticated with NASA Earthdata Login\nUsing token with expiration date: 08/19/2023\nUsing .netrc file for EDL\nGranules found: 2\nfound results: [Collection: {'Version': '4.1', 'ShortName': 'MUR-JPL-L4-GLOB-v4.1'}\nSpatial coverage: {'HorizontalSpatialDomain': {'Geometry': {'BoundingRectangles': [{'WestBoundingCoordinate': -180, 'SouthBoundingCoordinate': -90, 'EastBoundingCoordinate': 180, 'NorthBoundingCoordinate': 90}]}}}\nTemporal coverage: {'RangeDateTime': {'EndingDateTime': '2021-07-01T21:00:00.000Z', 'BeginningDateTime': '2021-06-30T21:00:00.000Z'}}\nSize(MB): 0\nData: ['https://archive.podaac.earthdata.nasa.gov/podaac-ops-cumulus-protected/MUR-JPL-L4-GLOB-v4.1/20210701090000-JPL-L4_GHRSST-SSTfnd-MUR-GLOB-v02.0-fv04.1.nc'], Collection: {'Version': '4.1', 'ShortName': 'MUR-JPL-L4-GLOB-v4.1'}\nSpatial coverage: {'HorizontalSpatialDomain': {'Geometry': {'BoundingRectangles': [{'WestBoundingCoordinate': -180, 'SouthBoundingCoordinate': -90, 'EastBoundingCoordinate': 180, 'NorthBoundingCoordinate': 90}]}}}\nTemporal coverage: {'RangeDateTime': {'EndingDateTime': '2021-07-02T21:00:00.000Z', 'BeginningDateTime': '2021-07-01T21:00:00.000Z'}}\nSize(MB): 0\nData: ['https://archive.podaac.earthdata.nasa.gov/podaac-ops-cumulus-protected/MUR-JPL-L4-GLOB-v4.1/20210702090000-JPL-L4_GHRSST-SSTfnd-MUR-GLOB-v02.0-fv04.1.nc']]\n Opening 2 granules, approx size: 0.0 GB\nQUEUEING TASKS | : 0%| | 0/2 [00:00\nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\n", + "history_begin_time" : 1686725646800, + "history_end_time" : 1686725783217, + "history_notes" : null, + "history_process" : "cgvhiy", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "6kao0imdnt8", + "history_input" : "# Suppress warnings\nimport os\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs\nimport matplotlib.pyplot as plt\nfrom earth_access_authenticate import *\n\ncreds = harmony_client.aws_credentials()\ns3_fs = s3fs.S3FileSystem(\n key=creds['aws_access_key_id'],\n secret=creds['aws_secret_access_key'],\n token=creds['aws_session_token'],\n client_kwargs={'region_name':'us-west-2'},\n)\nf = s3_fs.open(url, mode='rb')\nds = xr.open_dataset(f)\nds.analysed_sst.plot()\nhome_dir = os.path.expanduser('~')\nplt.savefig(os.path.join(home_dir, 'plot2.png'))", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\nYou're now authenticated with NASA Earthdata Login\nUsing token with expiration date: 08/07/2023\nUsing .netrc file for EDL\n Opening 18 granules, approx size: 0.0 GB\nSUBMITTING | : 0%| | 0/18 [00:00\nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\n", + "history_begin_time" : 1686725784306, + "history_end_time" : 1686725896539, + "history_notes" : null, + "history_process" : "1b4ko0", + "host_id" : "100001", + "indicator" : "Done" +}] diff --git a/history/csltVkAvLqfza0jV0i.json b/history/csltVkAvLqfza0jV0i.json new file mode 100644 index 0000000..3e7e914 --- /dev/null +++ b/history/csltVkAvLqfza0jV0i.json @@ -0,0 +1,41 @@ +[{ + "history_id" : "41l2aiz7t60", + "history_input" : "\n\n\n# Suppress warnings\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\n", + "history_begin_time" : 1686632544722, + "history_end_time" : 1686632577864, + "history_notes" : null, + "history_process" : "wttkvt", + "host_id" : "100001", + "indicator" : "Stopped" +},{ + "history_id" : "kfzm1gsm2q3", + "history_input" : "from earth_data_utils import *\n\nssh_short_name = \"SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205\"\n\nresults = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-09-30\"),\n)", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\n", + "history_begin_time" : 1686632554346, + "history_end_time" : 1686632577866, + "history_notes" : null, + "history_process" : "yvo1ds", + "host_id" : "100001", + "indicator" : "Stopped" +},{ + "history_id" : "qlori0y7gvu", + "history_input" : "No code saved", + "history_output" : "Skipped", + "history_begin_time" : 1686632543824, + "history_end_time" : 1686632577866, + "history_notes" : null, + "history_process" : "cgvhiy", + "host_id" : "100001", + "indicator" : "Stopped" +},{ + "history_id" : "5gv9vylxfc1", + "history_input" : "# Suppress warnings\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs\nimport matplotlib.pyplot as plt\nfrom earth_access_authenticate import *\n\ncreds = harmony_client.aws_credentials()\ns3_fs = s3fs.S3FileSystem(\n key=creds['aws_access_key_id'],\n secret=creds['aws_secret_access_key'],\n token=creds['aws_session_token'],\n client_kwargs={'region_name':'us-west-2'},\n)\nf = s3_fs.open(url, mode='rb')\nds = xr.open_dataset(f)\nds.analysed_sst.plot()\nplt.savefig('plot.png')", + "history_output" : "Running", + "history_begin_time" : 1686632544524, + "history_end_time" : 1686632577887, + "history_notes" : null, + "history_process" : "1b4ko0", + "host_id" : "100001", + "indicator" : "Done" +}] diff --git a/history/e02dq17h7tng220fo1.json b/history/e02dq17h7tng220fo1.json new file mode 100644 index 0000000..9906963 --- /dev/null +++ b/history/e02dq17h7tng220fo1.json @@ -0,0 +1,41 @@ +[{ + "history_id" : "lhk2du7fuoq", + "history_input" : "No code saved", + "history_output" : "Skipped", + "history_begin_time" : 1687322033464, + "history_end_time" : 1687322033464, + "history_notes" : null, + "history_process" : "wttkvt", + "host_id" : "100001", + "indicator" : "Skipped" +},{ + "history_id" : "uwe21ghcv85", + "history_input" : "#!/bin/bash\npip3 install geopandas earthaccess xarray harmony-py s3fs\n", + "history_output" : "Defaulting to user installation because normal site-packages is not writeable\nRequirement already satisfied: geopandas in /Users/joe/Library/Python/3.9/lib/python/site-packages (0.13.2)\nRequirement already satisfied: earthaccess in /Users/joe/Library/Python/3.9/lib/python/site-packages (0.5.2)\nRequirement already satisfied: xarray in /Users/joe/Library/Python/3.9/lib/python/site-packages (2023.5.0)\nRequirement already satisfied: harmony-py in /Users/joe/Library/Python/3.9/lib/python/site-packages (0.4.9)\nRequirement already satisfied: s3fs in /Users/joe/Library/Python/3.9/lib/python/site-packages (2023.6.0)\nRequirement already satisfied: packaging in /Users/joe/Library/Python/3.9/lib/python/site-packages (from geopandas) (21.3)\nRequirement already satisfied: pandas>=1.1.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from geopandas) (2.0.2)\nRequirement already satisfied: shapely>=1.7.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from geopandas) (2.0.1)\nRequirement already satisfied: pyproj>=3.0.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from geopandas) (3.6.0)\nRequirement already satisfied: fiona>=1.8.19 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from geopandas) (1.9.4.post1)\nRequirement already satisfied: fsspec>=2022.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from earthaccess) (2023.6.0)\nRequirement already satisfied: python-cmr>=0.7 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from earthaccess) (0.7.0)\nRequirement already satisfied: multimethod>=1.8 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from earthaccess) (1.9.1)\nRequirement already satisfied: pqdm>=0.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from earthaccess) (0.2.0)\nRequirement already satisfied: tinynetrc<2.0.0,>=1.3.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from earthaccess) (1.3.1)\nRequirement already satisfied: requests<3.0.0,>=2.26 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from earthaccess) (2.28.2)\nRequirement already satisfied: numpy>=1.21 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from xarray) (1.24.3)\nRequirement already satisfied: sphinxcontrib-napoleon~=0.7 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from harmony-py) (0.7)\nRequirement already satisfied: python-dateutil~=2.8.2 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from harmony-py) (2.8.2)\nRequirement already satisfied: curlify~=2.2.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from harmony-py) (2.2.1)\nRequirement already satisfied: progressbar2~=3.55.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from harmony-py) (3.55.0)\nRequirement already satisfied: python-dotenv~=0.20.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from harmony-py) (0.20.0)\nRequirement already satisfied: aiobotocore~=2.5.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from s3fs) (2.5.0)\nRequirement already satisfied: aiohttp!=4.0.0a0,!=4.0.0a1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from s3fs) (3.8.4)\nRequirement already satisfied: wrapt>=1.10.10 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiobotocore~=2.5.0->s3fs) (1.15.0)\nRequirement already satisfied: aioitertools>=0.5.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiobotocore~=2.5.0->s3fs) (0.11.0)\nRequirement already satisfied: botocore<1.29.77,>=1.29.76 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiobotocore~=2.5.0->s3fs) (1.29.76)\nRequirement already satisfied: attrs>=17.3.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs) (23.1.0)\nRequirement already satisfied: yarl<2.0,>=1.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs) (1.9.2)\nRequirement already satisfied: frozenlist>=1.1.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs) (1.3.3)\nRequirement already satisfied: async-timeout<5.0,>=4.0.0a3 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs) (4.0.2)\nRequirement already satisfied: multidict<7.0,>=4.5 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs) (6.0.4)\nRequirement already satisfied: charset-normalizer<4.0,>=2.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs) (3.1.0)\nRequirement already satisfied: aiosignal>=1.1.2 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs) (1.3.1)\nRequirement already satisfied: typing_extensions>=4.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aioitertools>=0.5.1->aiobotocore~=2.5.0->s3fs) (4.6.3)\nRequirement already satisfied: urllib3<1.27,>=1.25.4 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from botocore<1.29.77,>=1.29.76->aiobotocore~=2.5.0->s3fs) (1.26.15)\nRequirement already satisfied: jmespath<2.0.0,>=0.7.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from botocore<1.29.77,>=1.29.76->aiobotocore~=2.5.0->s3fs) (1.0.1)\nRequirement already satisfied: click~=8.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from fiona>=1.8.19->geopandas) (8.1.3)\nRequirement already satisfied: six in /Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.9/lib/python3.9/site-packages (from fiona>=1.8.19->geopandas) (1.15.0)\nRequirement already satisfied: cligj>=0.5 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from fiona>=1.8.19->geopandas) (0.7.2)\nRequirement already satisfied: certifi in /Users/joe/Library/Python/3.9/lib/python/site-packages (from fiona>=1.8.19->geopandas) (2022.12.7)\nRequirement already satisfied: importlib-metadata in /Users/joe/Library/Python/3.9/lib/python/site-packages (from fiona>=1.8.19->geopandas) (6.6.0)\nRequirement already satisfied: click-plugins>=1.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from fiona>=1.8.19->geopandas) (1.1.1)\nRequirement already satisfied: pyparsing!=3.0.5,>=2.0.2 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from packaging->geopandas) (3.0.9)\nRequirement already satisfied: tzdata>=2022.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from pandas>=1.1.0->geopandas) (2023.3)\nRequirement already satisfied: pytz>=2020.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from pandas>=1.1.0->geopandas) (2023.3)\nRequirement already satisfied: tqdm in /Users/joe/Library/Python/3.9/lib/python/site-packages (from pqdm>=0.1->earthaccess) (4.65.0)\nRequirement already satisfied: bounded-pool-executor in /Users/joe/Library/Python/3.9/lib/python/site-packages (from pqdm>=0.1->earthaccess) (0.0.3)\nRequirement already satisfied: python-utils>=2.3.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from progressbar2~=3.55.0->harmony-py) (3.6.1)\nRequirement already satisfied: idna<4,>=2.5 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from requests<3.0.0,>=2.26->earthaccess) (3.4)\nRequirement already satisfied: pockets>=0.3 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from sphinxcontrib-napoleon~=0.7->harmony-py) (0.9.1)\nRequirement already satisfied: zipp>=0.5 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from importlib-metadata->fiona>=1.8.19->geopandas) (3.15.0)\nWARNING: You are using pip version 21.2.4; however, version 23.1.2 is available.\nYou should consider upgrading via the '/Applications/Xcode.app/Contents/Developer/usr/bin/python3 -m pip install --upgrade pip' command.\n", + "history_begin_time" : 1687322034428, + "history_end_time" : 1687322036869, + "history_notes" : null, + "history_process" : "ru79i2", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "ohvdmvpfy1m", + "history_input" : "from earth_data_utils import *\n\ndef search_and_get_sst():\n auth_earthaccess()\n results = earthaccess.search_data(\n short_name=sst_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-07-02\"),\n )\n print(\"found results: \", results)\n return results\n\ndef plot_subset(ds_subset):\n ds_subset.plot(figsize=(12,6), x='lon', y='lat')\n home_dir = os.path.expanduser('~')\n \n file_name = f\"geoweaver_plot_{str(uuid.uuid4())}.png\"\n save_file_path = os.path.join(home_dir, file_name)\n plt.savefig(save_file_path)\n print(f\"new figure is saved to {save_file_path}\")\n\nwith get_dataset(search_and_get_sst()) as ds:\n subset = ds[\"analysed_sst\"].sel(lat=slice(27, 37), \n lon=slice(-70,-50)).std('time')\n plot_subset(subset)\n\n", + "history_output" : "You're now authenticated with NASA Earthdata Login\nUsing token with expiration date: 08/19/2023\nUsing .netrc file for EDL\nGranules found: 2\nfound results: [Collection: {'Version': '4.1', 'ShortName': 'MUR-JPL-L4-GLOB-v4.1'}\nSpatial coverage: {'HorizontalSpatialDomain': {'Geometry': {'BoundingRectangles': [{'WestBoundingCoordinate': -180, 'SouthBoundingCoordinate': -90, 'EastBoundingCoordinate': 180, 'NorthBoundingCoordinate': 90}]}}}\nTemporal coverage: {'RangeDateTime': {'EndingDateTime': '2021-07-01T21:00:00.000Z', 'BeginningDateTime': '2021-06-30T21:00:00.000Z'}}\nSize(MB): 0\nData: ['https://archive.podaac.earthdata.nasa.gov/podaac-ops-cumulus-protected/MUR-JPL-L4-GLOB-v4.1/20210701090000-JPL-L4_GHRSST-SSTfnd-MUR-GLOB-v02.0-fv04.1.nc'], Collection: {'Version': '4.1', 'ShortName': 'MUR-JPL-L4-GLOB-v4.1'}\nSpatial coverage: {'HorizontalSpatialDomain': {'Geometry': {'BoundingRectangles': [{'WestBoundingCoordinate': -180, 'SouthBoundingCoordinate': -90, 'EastBoundingCoordinate': 180, 'NorthBoundingCoordinate': 90}]}}}\nTemporal coverage: {'RangeDateTime': {'EndingDateTime': '2021-07-02T21:00:00.000Z', 'BeginningDateTime': '2021-07-01T21:00:00.000Z'}}\nSize(MB): 0\nData: ['https://archive.podaac.earthdata.nasa.gov/podaac-ops-cumulus-protected/MUR-JPL-L4-GLOB-v4.1/20210702090000-JPL-L4_GHRSST-SSTfnd-MUR-GLOB-v02.0-fv04.1.nc']]\n Opening 2 granules, approx size: 0.0 GB\nQUEUEING TASKS | : 0%| | 0/2 [00:00\nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\n", + "history_begin_time" : 1686719712075, + "history_end_time" : 1686719783824, + "history_notes" : null, + "history_process" : "cgvhiy", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "aqheg6aimys", + "history_input" : "# Suppress warnings\nimport os\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs\nimport matplotlib.pyplot as plt\nfrom earth_access_authenticate import *\n\ncreds = harmony_client.aws_credentials()\ns3_fs = s3fs.S3FileSystem(\n key=creds['aws_access_key_id'],\n secret=creds['aws_secret_access_key'],\n token=creds['aws_session_token'],\n client_kwargs={'region_name':'us-west-2'},\n)\nf = s3_fs.open(url, mode='rb')\nds = xr.open_dataset(f)\nds.analysed_sst.plot()\nhome_dir = os.path.expanduser('~')\nplt.savefig(os.path.join(home_dir, 'plot2.png'))", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\nYou're now authenticated with NASA Earthdata Login\nUsing token with expiration date: 08/07/2023\nUsing .netrc file for EDL\n Opening 18 granules, approx size: 0.0 GB\nSUBMITTING | : 0%| | 0/18 [00:00\nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\n", + "history_begin_time" : 1686719784992, + "history_end_time" : 1686719847471, + "history_notes" : null, + "history_process" : "1b4ko0", + "host_id" : "100001", + "indicator" : "Done" +}] diff --git a/history/fbSMCmb9pAMK1bogT0.json b/history/fbSMCmb9pAMK1bogT0.json new file mode 100644 index 0000000..9e6be01 --- /dev/null +++ b/history/fbSMCmb9pAMK1bogT0.json @@ -0,0 +1,51 @@ +[{ + "history_id" : "8twcw142yu6", + "history_input" : "\n\n\n# Suppress warnings\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\n", + "history_begin_time" : 1686245526518, + "history_end_time" : 1686245774156, + "history_notes" : null, + "history_process" : "wttkvt", + "host_id" : "100001", + "indicator" : "Stopped" +},{ + "history_id" : "7s0euy77fc6", + "history_input" : "from earth_data_utils import *\n\nssh_short_name = \"SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205\"\n\nresults = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-09-30\"),\n)", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\n", + "history_begin_time" : 1686245536752, + "history_end_time" : 1686245774158, + "history_notes" : null, + "history_process" : "yvo1ds", + "host_id" : "100001", + "indicator" : "Stopped" +},{ + "history_id" : "tkqrgl8dh6i", + "history_input" : "from search_data import *\n\nauth = earthaccess.login(strategy=\"netrc\", persist=True)\nds = xr.open_mfdataset(earthaccess.open(results))\ngeojson_path = '/home/jovyan/gulf.json'\ngdf = gpd.read_file(geojson_path) #Return a GeoDataFrame object\n\ntry:\n harmony_client = Client()\n sst_short_name=\"MUR-JPL-L4-GLOB-v4.1\"\n\n request = Request(\n collection=Collection(id=sst_short_name),\n shape=geojson_path,\n temporal={\n 'start': dt.datetime(2021, 8, 1, 1),\n 'stop': dt.datetime(2021, 8, 1, 2) \n },\n )\n job_id = harmony_client.submit(request)\n harmony_client.wait_for_processing(job_id, show_progress=True)\n data = harmony_client.result_json(job_id)\n results = harmony_client.result_urls(job_id, link_type=LinkType.s3)\n urls = list(results)\n url = urls[0]\nexcept:\n print(\"please re-run the request\")", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\nYou're now authenticated with NASA Earthdata Login\nUsing token with expiration date: 08/07/2023\nUsing .netrc file for EDL\n Opening 18 granules, approx size: 0.0 GB\nSUBMITTING | : 0%| | 0/18 [00:00\nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\n", + "history_begin_time" : 1686245548902, + "history_end_time" : 1686245774159, + "history_notes" : null, + "history_process" : "cgvhiy", + "host_id" : "100001", + "indicator" : "Stopped" +},{ + "history_id" : "100qc7otnes", + "history_input" : "from earth_access_authenticate import *\n\nsst_short_name=\"MUR-JPL-L4-GLOB-v4.1\"\n\nharmony_client = Client()\nrequest = Request(\n collection=Collection(id=sst_short_name),\n shape='./shared/earthdata-cloud-cookbook/examples/data/gulf.json',\n temporal={\n 'start': dt.datetime(2021, 8, 1, 1),\n 'stop': dt.datetime(2021, 8, 1, 2) \n },\n)\njob_id = harmony_client.submit(request)\nharmony_client.wait_for_processing(job_id, show_progress=True)\ndata = harmony_client.result_json(job_id)\nresults = harmony_client.result_urls(job_id, link_type=LinkType.s3)\nurls = list(results)\nurl = urls[0]", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\nYou're now authenticated with NASA Earthdata Login\nUsing token with expiration date: 08/07/2023\nUsing .netrc file for EDL\n Opening 18 granules, approx size: 0.0 GB\nSUBMITTING | : 0%| | 0/18 [00:00\n job_id = harmony_client.submit(request)\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/harmony/harmony.py\", line 715, in submit\n raise Exception(f\"Cannot submit the request due to the following errors: [{msgs}]\")\nException: Cannot submit the request due to the following errors: [The provided shape path \"./shared/earthdata-cloud-cookbook/examples/data/gulf.json\" does not exist]\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\n", + "history_begin_time" : 1686245645025, + "history_end_time" : 1686245774161, + "history_notes" : null, + "history_process" : "v2ow93", + "host_id" : "100001", + "indicator" : "Stopped" +},{ + "history_id" : "ko8yqm9aivh", + "history_input" : "from connect_harmony_client import *\n\ncreds = harmony_client.aws_credentials()\ns3_fs = s3fs.S3FileSystem(\n key=creds['aws_access_key_id'],\n secret=creds['aws_secret_access_key'],\n token=creds['aws_session_token'],\n client_kwargs={'region_name':'us-west-2'},\n)\nf = s3_fs.open(url, mode='rb')\nds = xr.open_dataset(f)\n#ds.analysed_sst.plot()", + "history_output" : "Running", + "history_begin_time" : 1686245729117, + "history_end_time" : 1686245774193, + "history_notes" : null, + "history_process" : "1b4ko0", + "host_id" : "100001", + "indicator" : "Done" +}] diff --git a/history/gh2rmy5cq1bc003ak4.json b/history/gh2rmy5cq1bc003ak4.json new file mode 100644 index 0000000..1b14c8b --- /dev/null +++ b/history/gh2rmy5cq1bc003ak4.json @@ -0,0 +1,21 @@ +[{ + "history_id" : "su0t44uyhx4", + "history_input" : "# Write first python in Geoweaver\nx = 1\n", + "history_output" : "", + "history_begin_time" : 1686364629718, + "history_end_time" : 1686364630456, + "history_notes" : null, + "history_process" : "qmc7xi", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "acdfrkt8tq5", + "history_input" : "# Write first python in Geoweaver\nx = 1\n", + "history_output" : "", + "history_begin_time" : 1686364630719, + "history_end_time" : 1686364631295, + "history_notes" : null, + "history_process" : "qmc7xi", + "host_id" : "100001", + "indicator" : "Done" +}] diff --git a/history/h26w0736xpdftw6zw1.json b/history/h26w0736xpdftw6zw1.json new file mode 100644 index 0000000..1588dc6 --- /dev/null +++ b/history/h26w0736xpdftw6zw1.json @@ -0,0 +1,41 @@ +[{ + "history_id" : "cdwj0yhki09", + "history_input" : "\n\n\n# Suppress warnings\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\n", + "history_begin_time" : 1686751856346, + "history_end_time" : 1686751865120, + "history_notes" : null, + "history_process" : "wttkvt", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "kgza02gacae", + "history_input" : "from earth_data_utils import *\n\nssh_short_name = \"SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205\"\n\nresults = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-09-30\"),\n)", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\n", + "history_begin_time" : 1686751866347, + "history_end_time" : 1686751876645, + "history_notes" : null, + "history_process" : "yvo1ds", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "98ylxp4sxjn", + "history_input" : "from search_data import *\n\nsst_short_name=\"MUR-JPL-L4-GLOB-v4.1\"\n\nresults = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-09-30\"),\n)\n\nauth = earthaccess.login(strategy=\"netrc\", persist=True)\nds = xr.open_mfdataset(earthaccess.open(results))\ngeojson_path = '/home/jovyan/gulf.json'\ngdf = gpd.read_file(geojson_path) #Return a GeoDataFrame object\n\n\nharmony_client = Client()\nsst_short_name=\"MUR-JPL-L4-GLOB-v4.1\"\n\nrequest = Request(\n collection=Collection(id=sst_short_name),\n shape=geojson_path,\n temporal={\n 'start': dt.datetime(2021, 8, 1, 1),\n 'stop': dt.datetime(2021, 8, 1, 2) \n },\n)\njob_id = harmony_client.submit(request)\nharmony_client.wait_for_processing(job_id, show_progress=False)\ndata = harmony_client.result_json(job_id)\nresults = harmony_client.result_urls(job_id, link_type=LinkType.s3)\nurls = list(results)\nurl = urls[0]\n", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\nGranules found: 18\nYou're now authenticated with NASA Earthdata Login\nUsing token with expiration date: 08/07/2023\nUsing .netrc file for EDL\n Opening 18 granules, approx size: 0.0 GB\nSUBMITTING | : 0%| | 0/18 [00:00\nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\n", + "history_begin_time" : 1686751878141, + "history_end_time" : 1686751971480, + "history_notes" : null, + "history_process" : "cgvhiy", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "cgn6ydwmgml", + "history_input" : "# Suppress warnings\nimport os\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs\nimport matplotlib.pyplot as plt\nfrom earth_access_authenticate import *\n\ncreds = harmony_client.aws_credentials()\ns3_fs = s3fs.S3FileSystem(\n key=creds['aws_access_key_id'],\n secret=creds['aws_secret_access_key'],\n token=creds['aws_session_token'],\n client_kwargs={'region_name':'us-west-2'},\n)\nf = s3_fs.open(url, mode='rb')\nds = xr.open_dataset(f)\nds.analysed_sst.plot()\nhome_dir = os.path.expanduser('~')\nplt.savefig(os.path.join(home_dir, 'plot2.png'))", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\nGranules found: 18\nYou're now authenticated with NASA Earthdata Login\nUsing token with expiration date: 08/07/2023\nUsing .netrc file for EDL\n Opening 18 granules, approx size: 0.0 GB\nSUBMITTING | : 0%| | 0/18 [00:00\nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\n", + "history_begin_time" : 1686751972672, + "history_end_time" : 1686752179095, + "history_notes" : null, + "history_process" : "1b4ko0", + "host_id" : "100001", + "indicator" : "Done" +}] diff --git a/history/jid4vegdc9y0pz1oco.json b/history/jid4vegdc9y0pz1oco.json new file mode 100644 index 0000000..47d4aaa --- /dev/null +++ b/history/jid4vegdc9y0pz1oco.json @@ -0,0 +1,41 @@ +[{ + "history_id" : "5d7o2a98whf", + "history_input" : "\n\n\n# Suppress warnings\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\n", + "history_begin_time" : 1686727050227, + "history_end_time" : 1686727058494, + "history_notes" : null, + "history_process" : "wttkvt", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "li05i4f1ou8", + "history_input" : "from earth_data_utils import *\n\nssh_short_name = \"SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205\"\n\nresults = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-09-30\"),\n)", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\n", + "history_begin_time" : 1686727060227, + "history_end_time" : 1686727071392, + "history_notes" : null, + "history_process" : "yvo1ds", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "os5fg71xhmj", + "history_input" : "from search_data import *\n\nsst_short_name=\"MUR-JPL-L4-GLOB-v4.1\"\n\nresults = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-09-30\"),\n)\n\nauth = earthaccess.login(strategy=\"netrc\", persist=True)\nds = xr.open_mfdataset(earthaccess.open(results))\ngeojson_path = '/home/jovyan/gulf.json'\ngdf = gpd.read_file(geojson_path) #Return a GeoDataFrame object\n\n\nharmony_client = Client()\nsst_short_name=\"MUR-JPL-L4-GLOB-v4.1\"\n\nrequest = Request(\n collection=Collection(id=sst_short_name),\n shape=geojson_path,\n temporal={\n 'start': dt.datetime(2021, 8, 1, 1),\n 'stop': dt.datetime(2021, 8, 1, 2) \n },\n)\njob_id = harmony_client.submit(request)\nharmony_client.wait_for_processing(job_id, show_progress=False)\ndata = harmony_client.result_json(job_id)\nresults = harmony_client.result_urls(job_id, link_type=LinkType.s3)\nurls = list(results)\nurl = urls[0]\n", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\nGranules found: 18\nYou're now authenticated with NASA Earthdata Login\nUsing token with expiration date: 08/07/2023\nUsing .netrc file for EDL\n Opening 18 granules, approx size: 0.0 GB\nSUBMITTING | : 0%| | 0/18 [00:00\nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\n", + "history_begin_time" : 1686727072514, + "history_end_time" : 1686727143603, + "history_notes" : null, + "history_process" : "cgvhiy", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "wck1t9ecb1m", + "history_input" : "# Suppress warnings\nimport os\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs\nimport matplotlib.pyplot as plt\nfrom earth_access_authenticate import *\n\ncreds = harmony_client.aws_credentials()\ns3_fs = s3fs.S3FileSystem(\n key=creds['aws_access_key_id'],\n secret=creds['aws_secret_access_key'],\n token=creds['aws_session_token'],\n client_kwargs={'region_name':'us-west-2'},\n)\nf = s3_fs.open(url, mode='rb')\nds = xr.open_dataset(f)\nds.analysed_sst.plot()\nhome_dir = os.path.expanduser('~')\nplt.savefig(os.path.join(home_dir, 'plot2.png'))", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\nGranules found: 18\nYou're now authenticated with NASA Earthdata Login\nUsing token with expiration date: 08/07/2023\nUsing .netrc file for EDL\n Opening 18 granules, approx size: 0.0 GB\nSUBMITTING | : 0%| | 0/18 [00:00\nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\n", + "history_begin_time" : 1686727145415, + "history_end_time" : 1686727214345, + "history_notes" : null, + "history_process" : "1b4ko0", + "host_id" : "100001", + "indicator" : "Done" +}] diff --git a/history/ju768g303se38lkt74.json b/history/ju768g303se38lkt74.json new file mode 100644 index 0000000..30ff1fa --- /dev/null +++ b/history/ju768g303se38lkt74.json @@ -0,0 +1,31 @@ +[{ + "history_id" : "f22j91pmqpv", + "history_input" : null, + "history_output" : "Authentication Failed. Wrong Password.", + "history_begin_time" : 1686724134089, + "history_end_time" : 1686724134198, + "history_notes" : null, + "history_process" : "wttkvt", + "host_id" : "100001", + "indicator" : "Failed" +},{ + "history_id" : "7zqvk9xlxmx", + "history_input" : null, + "history_output" : "Authentication Failed. Wrong Password.", + "history_begin_time" : 1686724135089, + "history_end_time" : 1686724135147, + "history_notes" : null, + "history_process" : "cgvhiy", + "host_id" : "100001", + "indicator" : "Failed" +},{ + "history_id" : "t89rk1modyd", + "history_input" : null, + "history_output" : "Authentication Failed. Wrong Password.", + "history_begin_time" : 1686724135208, + "history_end_time" : 1686724135247, + "history_notes" : null, + "history_process" : "1b4ko0", + "host_id" : "100001", + "indicator" : "Failed" +}] diff --git a/history/kialj0m6av03b04sv3.json b/history/kialj0m6av03b04sv3.json new file mode 100644 index 0000000..d699c53 --- /dev/null +++ b/history/kialj0m6av03b04sv3.json @@ -0,0 +1,31 @@ +[{ + "history_id" : "g7d9fcj72jd", + "history_input" : "\n\n\n# Suppress warnings\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\n", + "history_begin_time" : 1686694463422, + "history_end_time" : 1686694471965, + "history_notes" : null, + "history_process" : "wttkvt", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "ib10xzljy2q", + "history_input" : "from earth_data_utils import *\n\nssh_short_name = \"SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205\"\n\nsst_short_name=\"MUR-JPL-L4-GLOB-v4.1\"\n\nresults = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2020-07-01\", \"2020-09-30\"),\n)\n\nauth = earthaccess.login(strategy=\"netrc\", persist=True)\nds = xr.open_mfdataset(earthaccess.open(results))\ngeojson_path = '/home/jovyan/gulf.json'\ngdf = gpd.read_file(geojson_path) #Return a GeoDataFrame object\n\n\nharmony_client = Client()\nsst_short_name=\"MUR-JPL-L4-GLOB-v4.1\"\n\nrequest = Request(\n collection=Collection(id=sst_short_name),\n shape=geojson_path,\n temporal={\n 'start': dt.datetime(2020, 8, 1, 1),\n 'stop': dt.datetime(2020, 8, 1, 2) \n },\n)\njob_id = harmony_client.submit(request)\nharmony_client.wait_for_processing(job_id, show_progress=False)\ndata = harmony_client.result_json(job_id)\nresults = harmony_client.result_urls(job_id, link_type=LinkType.s3)\nurls = list(results)\nurl = urls[0]\n", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\nYou're now authenticated with NASA Earthdata Login\nUsing token with expiration date: 08/07/2023\nUsing .netrc file for EDL\n Opening 18 granules, approx size: 0.0 GB\nSUBMITTING | : 0%| | 0/18 [00:00\nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\n", + "history_begin_time" : 1686694473423, + "history_end_time" : 1686694703197, + "history_notes" : null, + "history_process" : "cgvhiy", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "srzxwzh6vjn", + "history_input" : "# Suppress warnings\nimport os\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs\nimport matplotlib.pyplot as plt\nfrom earth_access_authenticate import *\n\ncreds = harmony_client.aws_credentials()\ns3_fs = s3fs.S3FileSystem(\n key=creds['aws_access_key_id'],\n secret=creds['aws_secret_access_key'],\n token=creds['aws_session_token'],\n client_kwargs={'region_name':'us-west-2'},\n)\nf = s3_fs.open(url, mode='rb')\nds = xr.open_dataset(f)\nds.analysed_sst.plot()\nhome_dir = os.path.expanduser('~')\nplt.savefig(os.path.join(home_dir, 'plot2.png'))", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\nYou're now authenticated with NASA Earthdata Login\nUsing token with expiration date: 08/07/2023\nUsing .netrc file for EDL\n Opening 18 granules, approx size: 0.0 GB\nSUBMITTING | : 0%| | 0/18 [00:00\nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\n", + "history_begin_time" : 1686694704998, + "history_end_time" : 1686694823527, + "history_notes" : null, + "history_process" : "1b4ko0", + "host_id" : "100001", + "indicator" : "Done" +}] diff --git a/history/kr2novmm4i9i27z5adyj.json b/history/kr2novmm4i9i27z5adyj.json index b8b9506..57507e2 100644 --- a/history/kr2novmm4i9i27z5adyj.json +++ b/history/kr2novmm4i9i27z5adyj.json @@ -1,4 +1,34 @@ [{ + "history_id" : "b70aawjt8z4isn1dwy", + "history_input" : "wttkvt-GJjq8;ru79i2-VCNCv;nlsntt-zMUba;e57twj-ECmak;", + "history_output" : "617pj1d8nis;zzcxtngjbdu;uf7ngwa1cnl;agb7rrec49u;", + "history_begin_time" : 1687332369740, + "history_end_time" : 1687332374761, + "history_notes" : null, + "history_process" : "kr2novmm4i9i27z5adyj", + "host_id" : "100001;", + "indicator" : "Running" +},{ + "history_id" : "bv0wvvajfbrscyj6pm", + "history_input" : "wttkvt-GJjq8;ru79i2-VCNCv;nlsntt-zMUba;e57twj-ECmak;", + "history_output" : "1h6mwhjgffr;ced80h6vr3r;m3t1sdcsl3k;ed1lczm7cgh;", + "history_begin_time" : 1687330905800, + "history_end_time" : 1687330978529, + "history_notes" : null, + "history_process" : "kr2novmm4i9i27z5adyj", + "host_id" : "100001;", + "indicator" : "Done" +},{ + "history_id" : "e02dq17h7tng220fo1", + "history_input" : "wttkvt-GJjq8;ru79i2-VCNCv;nlsntt-zMUba;e57twj-ECmak;", + "history_output" : "lhk2du7fuoq;uwe21ghcv85;ohvdmvpfy1m;jx4uyzkdcs9;", + "history_begin_time" : 1687322033428, + "history_end_time" : 1687322107128, + "history_notes" : null, + "history_process" : "kr2novmm4i9i27z5adyj", + "host_id" : "100001;", + "indicator" : "Done" +},{ "history_id" : "woFrPp1c1EdP5vQQMr", "history_input" : "wttkvt-GJjq8;ru79i2-VCNCv;nlsntt-zMUba;e57twj-ECmak;", "history_output" : "n6qr3njqxfl;57mk6boxwwg;55ierovrm5x;p5ob71vf5jd;", diff --git a/history/l873z9b33henwzrydx.json b/history/l873z9b33henwzrydx.json new file mode 100644 index 0000000..af98396 --- /dev/null +++ b/history/l873z9b33henwzrydx.json @@ -0,0 +1,41 @@ +[{ + "history_id" : "p6977t6u1vo", + "history_input" : "\n\n\n# Suppress warnings\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs", + "history_output" : "Traceback (most recent call last):\n File \"/Users/joe/gw-workspace/p6977t6u1vo/earth_data_utils.py\", line 10, in \n import earthaccess \nModuleNotFoundError: No module named 'earthaccess'\n", + "history_begin_time" : 1686759148585, + "history_end_time" : 1686759148955, + "history_notes" : null, + "history_process" : "wttkvt", + "host_id" : "100001", + "indicator" : "Failed" +},{ + "history_id" : "3l2y4206qef", + "history_input" : "from earth_data_utils import *\n\nssh_short_name = \"SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205\"\n\nresults = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-09-30\"),\n)", + "history_output" : "Traceback (most recent call last):\n File \"/Users/joe/gw-workspace/3l2y4206qef/search_data.py\", line 1, in \n from earth_data_utils import *\n File \"/Users/joe/gw-workspace/3l2y4206qef/earth_data_utils.py\", line 10, in \n import earthaccess \nModuleNotFoundError: No module named 'earthaccess'\n", + "history_begin_time" : 1686759150591, + "history_end_time" : 1686759150744, + "history_notes" : null, + "history_process" : "yvo1ds", + "host_id" : "100001", + "indicator" : "Failed" +},{ + "history_id" : "74iyqhnh28j", + "history_input" : "from search_data import *\n\nsst_short_name=\"MUR-JPL-L4-GLOB-v4.1\"\n\nresults = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-09-30\"),\n)\n\nauth = earthaccess.login(strategy=\"netrc\", persist=True)\nds = xr.open_mfdataset(earthaccess.open(results))\ngeojson_path = '/home/jovyan/gulf.json'\ngdf = gpd.read_file(geojson_path) #Return a GeoDataFrame object\n\n\nharmony_client = Client()\nsst_short_name=\"MUR-JPL-L4-GLOB-v4.1\"\n\nrequest = Request(\n collection=Collection(id=sst_short_name),\n shape=geojson_path,\n temporal={\n 'start': dt.datetime(2021, 8, 1, 1),\n 'stop': dt.datetime(2021, 8, 1, 2) \n },\n)\njob_id = harmony_client.submit(request)\nharmony_client.wait_for_processing(job_id, show_progress=False)\ndata = harmony_client.result_json(job_id)\nresults = harmony_client.result_urls(job_id, link_type=LinkType.s3)\nurls = list(results)\nurl = urls[0]\n", + "history_output" : "Traceback (most recent call last):\n File \"/Users/joe/gw-workspace/74iyqhnh28j/earth_access_authenticate.py\", line 1, in \n from search_data import *\n File \"/Users/joe/gw-workspace/74iyqhnh28j/search_data.py\", line 1, in \n from earth_data_utils import *\n File \"/Users/joe/gw-workspace/74iyqhnh28j/earth_data_utils.py\", line 10, in \n import earthaccess \nModuleNotFoundError: No module named 'earthaccess'\n", + "history_begin_time" : 1686759152006, + "history_end_time" : 1686759152136, + "history_notes" : null, + "history_process" : "cgvhiy", + "host_id" : "100001", + "indicator" : "Failed" +},{ + "history_id" : "uu96597mlq0", + "history_input" : "# Suppress warnings\nimport os\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs\nimport matplotlib.pyplot as plt\nfrom earth_access_authenticate import *\n\ncreds = harmony_client.aws_credentials()\ns3_fs = s3fs.S3FileSystem(\n key=creds['aws_access_key_id'],\n secret=creds['aws_secret_access_key'],\n token=creds['aws_session_token'],\n client_kwargs={'region_name':'us-west-2'},\n)\nf = s3_fs.open(url, mode='rb')\nds = xr.open_dataset(f)\nds.analysed_sst.plot()\nhome_dir = os.path.expanduser('~')\nplt.savefig(os.path.join(home_dir, 'plot2.png'))", + "history_output" : "Traceback (most recent call last):\n File \"/Users/joe/gw-workspace/uu96597mlq0/s3_file_storage.py\", line 8, in \n import earthaccess \nModuleNotFoundError: No module named 'earthaccess'\n", + "history_begin_time" : 1686759153783, + "history_end_time" : 1686759153919, + "history_notes" : null, + "history_process" : "1b4ko0", + "host_id" : "100001", + "indicator" : "Failed" +}] diff --git a/history/lwpewb4927s4e4m49r.json b/history/lwpewb4927s4e4m49r.json new file mode 100644 index 0000000..1d73835 --- /dev/null +++ b/history/lwpewb4927s4e4m49r.json @@ -0,0 +1,51 @@ +[{ + "history_id" : "cfstxspovzt", + "history_input" : "\n\n\n# Suppress warnings\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\n", + "history_begin_time" : 1686242156975, + "history_end_time" : 1686242165723, + "history_notes" : null, + "history_process" : "wttkvt", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "b2ki4bv0fq7", + "history_input" : "from earth_data_utils import *\n\nssh_short_name = \"SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205\"\n\nresults = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-09-30\"),\n)", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\n", + "history_begin_time" : 1686242166976, + "history_end_time" : 1686242177307, + "history_notes" : null, + "history_process" : "yvo1ds", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "ichmjcjo5uz", + "history_input" : "from search_data import *\n\nauth = earthaccess.login(strategy=\"netrc\", persist=True)\nds = xr.open_mfdataset(earthaccess.open(results))\nds_subset = ds['SLA'].sel(Latitude=slice(15.8, 35.9), Longitude=slice(234.5,260.5)) \ngdf = {\n \"type\": \"FeatureCollection\",\n \"features\": [\n {\n \"type\": \"Feature\",\n \"properties\": {},\n \"geometry\": {\n \"type\": \"Polygon\",\n \"coordinates\": [\n [\n [\n -92.50277108026334,\n 29.56938225072281\n ],\n [\n -97.13008502799451,\n 27.537299169977643\n ],\n [\n -97.92333884760556,\n 23.117355263556085\n ],\n [\n -96.20462223844827,\n 19.297357882373674\n ],\n [\n -91.0484724109764,\n 19.2349555158823\n ],\n [\n -89.32975580181909,\n 21.096419248573053\n ],\n [\n -84.63633736912035,\n 21.404467339404434\n ],\n [\n -80.9344862109354,\n 24.928609732834346\n ],\n [\n -83.7769790645417,\n 30.199837703950273\n ],\n [\n -92.50277108026334,\n 29.56938225072281\n ]\n ]\n ]\n }\n }\n ]\n}", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\nYou're now authenticated with NASA Earthdata Login\nUsing token with expiration date: 08/07/2023\nUsing .netrc file for EDL\n Opening 18 granules, approx size: 0.0 GB\nSUBMITTING | : 0%| | 0/18 [00:00\nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\n", + "history_begin_time" : 1686242178750, + "history_end_time" : 1686242206545, + "history_notes" : null, + "history_process" : "cgvhiy", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "j32supczpgo", + "history_input" : "from earth_access_authenticate import *\n\nsst_short_name=\"MUR-JPL-L4-GLOB-v4.1\"\n\nharmony_client = Client()\nrequest = Request(\n collection=Collection(id=sst_short_name),\n shape='./shared/earthdata-cloud-cookbook/examples/data/gulf.json',\n temporal={\n 'start': dt.datetime(2021, 8, 1, 1),\n 'stop': dt.datetime(2021, 8, 1, 2) \n },\n)\njob_id = harmony_client.submit(request)\nharmony_client.wait_for_processing(job_id, show_progress=True)\ndata = harmony_client.result_json(job_id)\nresults = harmony_client.result_urls(job_id, link_type=LinkType.s3)\nurls = list(results)\nurl = urls[0]", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\nYou're now authenticated with NASA Earthdata Login\nUsing token with expiration date: 08/07/2023\nUsing .netrc file for EDL\n Opening 18 granules, approx size: 0.0 GB\nSUBMITTING | : 0%| | 0/18 [00:00\n job_id = harmony_client.submit(request)\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/harmony/harmony.py\", line 715, in submit\n raise Exception(f\"Cannot submit the request due to the following errors: [{msgs}]\")\nException: Cannot submit the request due to the following errors: [The provided shape path \"./shared/earthdata-cloud-cookbook/examples/data/gulf.json\" does not exist]\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\n", + "history_begin_time" : 1686242208328, + "history_end_time" : 1686242231131, + "history_notes" : null, + "history_process" : "v2ow93", + "host_id" : "100001", + "indicator" : "Failed" +},{ + "history_id" : "d3nhdcgfyv5", + "history_input" : "from connect_harmony_client import *\n\ncreds = harmony_client.aws_credentials()\ns3_fs = s3fs.S3FileSystem(\n key=creds['aws_access_key_id'],\n secret=creds['aws_secret_access_key'],\n token=creds['aws_session_token'],\n client_kwargs={'region_name':'us-west-2'},\n)\nf = s3_fs.open(url, mode='rb')\nds = xr.open_dataset(f)\n#ds.analysed_sst.plot()", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\nYou're now authenticated with NASA Earthdata Login\nUsing token with expiration date: 08/07/2023\nUsing .netrc file for EDL\n Opening 18 granules, approx size: 0.0 GB\nSUBMITTING | : 0%| | 0/18 [00:00\n from connect_harmony_client import *\n File \"/home/jovyan/gw-workspace/d3nhdcgfyv5/connect_harmony_client.py\", line 14, in \n job_id = harmony_client.submit(request)\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/harmony/harmony.py\", line 715, in submit\n raise Exception(f\"Cannot submit the request due to the following errors: [{msgs}]\")\nException: Cannot submit the request due to the following errors: [The provided shape path \"./shared/earthdata-cloud-cookbook/examples/data/gulf.json\" does not exist]\n", + "history_begin_time" : 1686242232567, + "history_end_time" : 1686242262431, + "history_notes" : null, + "history_process" : "1b4ko0", + "host_id" : "100001", + "indicator" : "Failed" +}] diff --git a/history/mx1w8k46bha4zi0q8r.json b/history/mx1w8k46bha4zi0q8r.json new file mode 100644 index 0000000..66035b8 --- /dev/null +++ b/history/mx1w8k46bha4zi0q8r.json @@ -0,0 +1,51 @@ +[{ + "history_id" : "up3kzptbd6u", + "history_input" : "\n\n\n# Suppress warnings\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\n", + "history_begin_time" : 1686247261143, + "history_end_time" : 1686247269915, + "history_notes" : null, + "history_process" : "wttkvt", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "33tkamqsogz", + "history_input" : "from earth_data_utils import *\n\nssh_short_name = \"SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205\"\n\nresults = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-09-30\"),\n)", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\n", + "history_begin_time" : 1686247271147, + "history_end_time" : 1686247280910, + "history_notes" : null, + "history_process" : "yvo1ds", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "1d8qw3nj2gh", + "history_input" : "from search_data import *\n\nauth = earthaccess.login(strategy=\"netrc\", persist=True)\nds = xr.open_mfdataset(earthaccess.open(results))\ngeojson_path = '/home/jovyan/gulf.json'\ngdf = gpd.read_file(geojson_path) #Return a GeoDataFrame object\n\ntry:\n harmony_client = Client()\n sst_short_name=\"MUR-JPL-L4-GLOB-v4.1\"\n\n request = Request(\n collection=Collection(id=sst_short_name),\n shape=geojson_path,\n temporal={\n 'start': dt.datetime(2021, 8, 1, 1),\n 'stop': dt.datetime(2021, 8, 1, 2) \n },\n )\n job_id = harmony_client.submit(request)\n harmony_client.wait_for_processing(job_id, show_progress=True)\n data = harmony_client.result_json(job_id)\n results = harmony_client.result_urls(job_id, link_type=LinkType.s3)\n urls = list(results)\n url = urls[0]\nexcept:\n print(\"please re-run the request\")", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\nYou're now authenticated with NASA Earthdata Login\nUsing token with expiration date: 08/07/2023\nUsing .netrc file for EDL\n Opening 18 granules, approx size: 0.0 GB\nSUBMITTING | : 0%| | 0/18 [00:00\nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\n", + "history_begin_time" : 1686247281965, + "history_end_time" : 1686248065451, + "history_notes" : null, + "history_process" : "cgvhiy", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "o9rugig6e7k", + "history_input" : "from earth_access_authenticate import *\n\nsst_short_name=\"MUR-JPL-L4-GLOB-v4.1\"\ntry:\n harmony_client = Client()\n request = Request(\n collection=Collection(id=sst_short_name),\n shape='./shared/earthdata-cloud-cookbook/examples/data/gulf.json',\n temporal={\n 'start': dt.datetime(2021, 8, 1, 1),\n 'stop': dt.datetime(2021, 8, 1, 2) \n },\n )\n job_id = harmony_client.submit(request)\n harmony_client.wait_for_processing(job_id, show_progress=True)\n data = harmony_client.result_json(job_id)\n results = harmony_client.result_urls(job_id, link_type=LinkType.s3)\n urls = list(results)\n url = urls[0]\nexcept:\n print(\"please re-run the workflow\")", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\nYou're now authenticated with NASA Earthdata Login\nUsing token with expiration date: 08/07/2023\nUsing .netrc file for EDL\n Opening 18 granules, approx size: 0.0 GB\nSUBMITTING | : 0%| | 0/18 [00:00\nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\n", + "history_begin_time" : 1686248067007, + "history_end_time" : 1686248289260, + "history_notes" : null, + "history_process" : "v2ow93", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "mvmf00065id", + "history_input" : "from connect_harmony_client import *\n\ntry:\n creds = harmony_client.aws_credentials()\n s3_fs = s3fs.S3FileSystem(\n key=creds['aws_access_key_id'],\n secret=creds['aws_secret_access_key'],\n token=creds['aws_session_token'],\n client_kwargs={'region_name':'us-west-2'},\n )\n f = s3_fs.open(url, mode='rb')\n ds = xr.open_dataset(f)\n#ds.analysed_sst.plot()\nexcept:\n pass", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\nYou're now authenticated with NASA Earthdata Login\nUsing token with expiration date: 08/07/2023\nUsing .netrc file for EDL\n Opening 18 granules, approx size: 0.0 GB\nSUBMITTING | : 0%| | 0/18 [00:00\nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\n", + "history_begin_time" : 1686248290505, + "history_end_time" : 1686248388682, + "history_notes" : null, + "history_process" : "1b4ko0", + "host_id" : "100001", + "indicator" : "Done" +}] diff --git a/history/n4tc1hvnq5eamswpkj.json b/history/n4tc1hvnq5eamswpkj.json new file mode 100644 index 0000000..8a48896 --- /dev/null +++ b/history/n4tc1hvnq5eamswpkj.json @@ -0,0 +1,31 @@ +[{ + "history_id" : "b1xhfo7bwi7", + "history_input" : null, + "history_output" : "Authentication Failed. Wrong Password.", + "history_begin_time" : 1686721725773, + "history_end_time" : 1686721725886, + "history_notes" : null, + "history_process" : "wttkvt", + "host_id" : "100001", + "indicator" : "Failed" +},{ + "history_id" : "7glifx2d4zb", + "history_input" : null, + "history_output" : "Authentication Failed. Wrong Password.", + "history_begin_time" : 1686721726773, + "history_end_time" : 1686721726818, + "history_notes" : null, + "history_process" : "cgvhiy", + "host_id" : "100001", + "indicator" : "Failed" +},{ + "history_id" : "x5eb4vvk25z", + "history_input" : null, + "history_output" : "Authentication Failed. Wrong Password.", + "history_begin_time" : 1686721726895, + "history_end_time" : 1686721726937, + "history_notes" : null, + "history_process" : "1b4ko0", + "host_id" : "100001", + "indicator" : "Failed" +}] diff --git a/history/nnyv3p5uhplqv43ml3.json b/history/nnyv3p5uhplqv43ml3.json new file mode 100644 index 0000000..d8f5f47 --- /dev/null +++ b/history/nnyv3p5uhplqv43ml3.json @@ -0,0 +1,21 @@ +[{ + "history_id" : "t8ew1m4j7vu", + "history_input" : "\n\n\n# Suppress warnings\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\n", + "history_begin_time" : 1686695725950, + "history_end_time" : 1686695734631, + "history_notes" : null, + "history_process" : "wttkvt", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "b2cu0js00pk", + "history_input" : null, + "history_output" : null, + "history_begin_time" : 1686695735951, + "history_end_time" : 1686695735951, + "history_notes" : null, + "history_process" : "cgvhiy", + "host_id" : "100001", + "indicator" : "Running" +}] diff --git a/history/o0enoj5tgqss95igeb.json b/history/o0enoj5tgqss95igeb.json new file mode 100644 index 0000000..870045f --- /dev/null +++ b/history/o0enoj5tgqss95igeb.json @@ -0,0 +1,31 @@ +[{ + "history_id" : "r2asbsxdswe", + "history_input" : "\n\n\n# Suppress warnings\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\n", + "history_begin_time" : 1686684615894, + "history_end_time" : 1686684624388, + "history_notes" : null, + "history_process" : "wttkvt", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "ymwjaacrz2k", + "history_input" : "from earth_data_utils import *\n\nssh_short_name = \"SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205\"\n\nsst_short_name=\"MUR-JPL-L4-GLOB-v4.1\"\n\nresults = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2020-07-01\", \"2020-09-30\"),\n)\n\nauth = earthaccess.login(strategy=\"netrc\", persist=True)\nds = xr.open_mfdataset(earthaccess.open(results))\ngeojson_path = '/home/jovyan/gulf.json'\ngdf = gpd.read_file(geojson_path) #Return a GeoDataFrame object\n\n\nharmony_client = Client()\nsst_short_name=\"MUR-JPL-L4-GLOB-v4.1\"\n\nrequest = Request(\n collection=Collection(id=sst_short_name),\n shape=geojson_path,\n temporal={\n 'start': dt.datetime(2020, 8, 1, 1),\n 'stop': dt.datetime(2020, 8, 1, 2) \n },\n)\njob_id = harmony_client.submit(request)\nharmony_client.wait_for_processing(job_id, show_progress=False)\ndata = harmony_client.result_json(job_id)\nresults = harmony_client.result_urls(job_id, link_type=LinkType.s3)\nurls = list(results)\nurl = urls[0]\n", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\nYou're now authenticated with NASA Earthdata Login\nUsing token with expiration date: 08/07/2023\nUsing .netrc file for EDL\n Opening 18 granules, approx size: 0.0 GB\nSUBMITTING | : 0%| | 0/18 [00:00\nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\n", + "history_begin_time" : 1686684625895, + "history_end_time" : 1686684696843, + "history_notes" : null, + "history_process" : "cgvhiy", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "ytpw40tli2u", + "history_input" : "# Suppress warnings\nimport os\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs\nimport matplotlib.pyplot as plt\nfrom earth_access_authenticate import *\n\ncreds = harmony_client.aws_credentials()\ns3_fs = s3fs.S3FileSystem(\n key=creds['aws_access_key_id'],\n secret=creds['aws_secret_access_key'],\n token=creds['aws_session_token'],\n client_kwargs={'region_name':'us-west-2'},\n)\nf = s3_fs.open(url, mode='rb')\nds = xr.open_dataset(f)\nds.analysed_sst.plot()\nhome_dir = os.path.expanduser('~')\nplt.savefig(os.path.join(home_dir, 'plot2.png'))", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\nYou're now authenticated with NASA Earthdata Login\nUsing token with expiration date: 08/07/2023\nUsing .netrc file for EDL\n Opening 18 granules, approx size: 0.0 GB\nSUBMITTING | : 0%| | 0/18 [00:00\nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\n", + "history_begin_time" : 1686684698431, + "history_end_time" : 1686685093037, + "history_notes" : null, + "history_process" : "1b4ko0", + "host_id" : "100001", + "indicator" : "Done" +}] diff --git a/history/oU0aQLscHakCzO9BOi.json b/history/oU0aQLscHakCzO9BOi.json new file mode 100644 index 0000000..b4dd794 --- /dev/null +++ b/history/oU0aQLscHakCzO9BOi.json @@ -0,0 +1,41 @@ +[{ + "history_id" : "1wr05lj5hop", + "history_input" : "\n\n\n# Suppress warnings\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\n", + "history_begin_time" : 1686760125186, + "history_end_time" : 1686760133987, + "history_notes" : null, + "history_process" : "wttkvt", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "02tpqkd5gyb", + "history_input" : "from search_data import *\n\n\nssh_short_name = \"SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205\"\n\nresults = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-09-30\"),\n)\nsst_short_name=\"MUR-JPL-L4-GLOB-v4.1\"\n\nresults = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-09-30\"),\n)\n\nauth = earthaccess.login(strategy=\"netrc\", persist=True)\nds = xr.open_mfdataset(earthaccess.open(results))\ngeojson_path = '/home/jovyan/gulf.json'\ngdf = gpd.read_file(geojson_path) #Return a GeoDataFrame object\n\n\nharmony_client = Client()\nsst_short_name=\"MUR-JPL-L4-GLOB-v4.1\"\n\nrequest = Request(\n collection=Collection(id=sst_short_name),\n shape=geojson_path,\n temporal={\n 'start': dt.datetime(2021, 8, 1, 1),\n 'stop': dt.datetime(2021, 8, 1, 2) \n },\n)\njob_id = harmony_client.submit(request)\nharmony_client.wait_for_processing(job_id, show_progress=False)\ndata = harmony_client.result_json(job_id)\nresults = harmony_client.result_urls(job_id, link_type=LinkType.s3)\nurls = list(results)\nurl = urls[0]\n", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\nGranules found: 18\nGranules found: 18\nYou're now authenticated with NASA Earthdata Login\nUsing token with expiration date: 08/07/2023\nUsing .netrc file for EDL\n Opening 18 granules, approx size: 0.0 GB\nSUBMITTING | : 0%| | 0/18 [00:00\nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\n", + "history_begin_time" : 1686760135911, + "history_end_time" : 1686760235447, + "history_notes" : null, + "history_process" : "cgvhiy", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "uq7umcf05ts", + "history_input" : "# Suppress warnings\nimport os\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs\nimport matplotlib.pyplot as plt\nfrom earth_access_authenticate import *\n\ncreds = harmony_client.aws_credentials()\ns3_fs = s3fs.S3FileSystem(\n key=creds['aws_access_key_id'],\n secret=creds['aws_secret_access_key'],\n token=creds['aws_session_token'],\n client_kwargs={'region_name':'us-west-2'},\n)\nf = s3_fs.open(url, mode='rb')\nds = xr.open_dataset(f)\nds.analysed_sst.plot()\nhome_dir = os.path.expanduser('~')\nplt.savefig(os.path.join(home_dir, 'plot2.png'))", + "history_output" : "Running", + "history_begin_time" : 1686760237693, + "history_end_time" : 1686760237001, + "history_notes" : null, + "history_process" : "1b4ko0", + "host_id" : "100001", + "indicator" : "Running" +},{ + "history_id" : "9vcd9yjszws", + "history_input" : "#!/bin/bash\npip3 install geopandas earthaccess xarray harmony-py s3fs\n", + "history_output" : "Requirement already satisfied: geopandas in /srv/conda/envs/notebook/lib/python3.9/site-packages (0.13.0)\nRequirement already satisfied: earthaccess in /srv/conda/envs/notebook/lib/python3.9/site-packages (0.5.2)\nRequirement already satisfied: xarray in /srv/conda/envs/notebook/lib/python3.9/site-packages (2023.4.2)\nRequirement already satisfied: harmony-py in /srv/conda/envs/notebook/lib/python3.9/site-packages (0.4.7)\nRequirement already satisfied: s3fs in /srv/conda/envs/notebook/lib/python3.9/site-packages (2023.5.0)\nRequirement already satisfied: fiona>=1.8.19 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from geopandas) (1.8.22)\nRequirement already satisfied: packaging in /srv/conda/envs/notebook/lib/python3.9/site-packages (from geopandas) (23.1)\nRequirement already satisfied: pandas>=1.1.0 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from geopandas) (2.0.1)\nRequirement already satisfied: pyproj>=3.0.1 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from geopandas) (3.5.0)\nRequirement already satisfied: shapely>=1.7.1 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from geopandas) (2.0.1)\nRequirement already satisfied: fsspec>=2022.1 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from earthaccess) (2023.5.0)\nRequirement already satisfied: multimethod>=1.8 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from earthaccess) (1.9.1)\nRequirement already satisfied: pqdm>=0.1 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from earthaccess) (0.1.0)\nRequirement already satisfied: python-cmr>=0.7 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from earthaccess) (0.7.0)\nRequirement already satisfied: requests<3.0.0,>=2.26 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from earthaccess) (2.27.1)\nRequirement already satisfied: tinynetrc<2.0.0,>=1.3.1 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from earthaccess) (1.3.1)\nRequirement already satisfied: numpy>=1.21 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from xarray) (1.23.5)\nRequirement already satisfied: python-dateutil~=2.8.2 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from harmony-py) (2.8.2)\nRequirement already satisfied: python-dotenv~=0.20.0 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from harmony-py) (0.20.0)\nRequirement already satisfied: progressbar2~=3.55.0 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from harmony-py) (3.55.0)\nRequirement already satisfied: sphinxcontrib-napoleon~=0.7 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from harmony-py) (0.7)\nRequirement already satisfied: curlify~=2.2.1 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from harmony-py) (2.2.1)\nRequirement already satisfied: aiobotocore~=2.5.0 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from s3fs) (2.5.0)\nRequirement already satisfied: aiohttp!=4.0.0a0,!=4.0.0a1 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from s3fs) (3.8.4)\nRequirement already satisfied: botocore<1.29.77,>=1.29.76 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from aiobotocore~=2.5.0->s3fs) (1.29.76)\nRequirement already satisfied: wrapt>=1.10.10 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from aiobotocore~=2.5.0->s3fs) (1.15.0)\nRequirement already satisfied: aioitertools>=0.5.1 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from aiobotocore~=2.5.0->s3fs) (0.11.0)\nRequirement already satisfied: attrs>=17.3.0 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs) (23.1.0)\nRequirement already satisfied: charset-normalizer<4.0,>=2.0 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs) (2.0.12)\nRequirement already satisfied: multidict<7.0,>=4.5 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs) (6.0.4)\nRequirement already satisfied: async-timeout<5.0,>=4.0.0a3 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs) (4.0.2)\nRequirement already satisfied: yarl<2.0,>=1.0 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs) (1.9.1)\nRequirement already satisfied: frozenlist>=1.1.1 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs) (1.3.3)\nRequirement already satisfied: aiosignal>=1.1.2 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs) (1.3.1)\nRequirement already satisfied: certifi in /srv/conda/envs/notebook/lib/python3.9/site-packages (from fiona>=1.8.19->geopandas) (2023.5.7)\nRequirement already satisfied: click>=4.0 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from fiona>=1.8.19->geopandas) (8.1.3)\nRequirement already satisfied: cligj>=0.5 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from fiona>=1.8.19->geopandas) (0.7.2)\nRequirement already satisfied: click-plugins>=1.0 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from fiona>=1.8.19->geopandas) (1.1.1)\nRequirement already satisfied: six>=1.7 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from fiona>=1.8.19->geopandas) (1.16.0)\nRequirement already satisfied: munch in /srv/conda/envs/notebook/lib/python3.9/site-packages (from fiona>=1.8.19->geopandas) (3.0.0)\nRequirement already satisfied: setuptools in /srv/conda/envs/notebook/lib/python3.9/site-packages (from fiona>=1.8.19->geopandas) (67.7.2)\nRequirement already satisfied: pytz>=2020.1 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from pandas>=1.1.0->geopandas) (2023.3)\nRequirement already satisfied: tzdata>=2022.1 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from pandas>=1.1.0->geopandas) (2023.3)\nRequirement already satisfied: bounded-pool-executor in /srv/conda/envs/notebook/lib/python3.9/site-packages (from pqdm>=0.1->earthaccess) (0.0.3)\nRequirement already satisfied: tqdm in /srv/conda/envs/notebook/lib/python3.9/site-packages (from pqdm>=0.1->earthaccess) (4.65.0)\nRequirement already satisfied: typing-extensions in /srv/conda/envs/notebook/lib/python3.9/site-packages (from pqdm>=0.1->earthaccess) (4.5.0)\nRequirement already satisfied: python-utils>=2.3.0 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from progressbar2~=3.55.0->harmony-py) (3.5.2)\nRequirement already satisfied: urllib3<1.27,>=1.21.1 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from requests<3.0.0,>=2.26->earthaccess) (1.26.15)\nRequirement already satisfied: idna<4,>=2.5 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from requests<3.0.0,>=2.26->earthaccess) (3.4)\nRequirement already satisfied: pockets>=0.3 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from sphinxcontrib-napoleon~=0.7->harmony-py) (0.9.1)\nRequirement already satisfied: jmespath<2.0.0,>=0.7.1 in /srv/conda/envs/notebook/lib/python3.9/site-packages (from botocore<1.29.77,>=1.29.76->aiobotocore~=2.5.0->s3fs) (1.0.1)\n", + "history_begin_time" : 1686760119277, + "history_end_time" : 1686760123905, + "history_notes" : null, + "history_process" : "ru79i2", + "host_id" : "100001", + "indicator" : "Done" +}] diff --git a/history/otrr4bjr5vvwob8kzf.json b/history/otrr4bjr5vvwob8kzf.json new file mode 100644 index 0000000..ff8fa68 --- /dev/null +++ b/history/otrr4bjr5vvwob8kzf.json @@ -0,0 +1,31 @@ +[{ + "history_id" : "ton9zjgdjuk", + "history_input" : "\n\n\n# Suppress warnings\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\n", + "history_begin_time" : 1686684353112, + "history_end_time" : 1686684361578, + "history_notes" : null, + "history_process" : "wttkvt", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "tegg9j1qpu2", + "history_input" : "from earth_data_utils import *\n\nssh_short_name = \"SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205\"\n\nsst_short_name=\"MUR-JPL-L4-GLOB-v4.1\"\n\nresults = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2020-07-01\", \"2020-09-30\"),\n)\n\nauth = earthaccess.login(strategy=\"netrc\", persist=True)\nds = xr.open_mfdataset(earthaccess.open(results))\ngeojson_path = '/home/jovyan/gulf.json'\ngdf = gpd.read_file(geojson_path) #Return a GeoDataFrame object\n\n\nharmony_client = Client()\nsst_short_name=\"MUR-JPL-L4-GLOB-v4.1\"\n\nrequest = Request(\n collection=Collection(id=sst_short_name),\n shape=geojson_path,\n temporal={\n 'start': dt.datetime(2021, 8, 1, 1),\n 'stop': dt.datetime(2021, 8, 1, 2) \n },\n)\njob_id = harmony_client.submit(request)\nharmony_client.wait_for_processing(job_id, show_progress=False)\ndata = harmony_client.result_json(job_id)\nresults = harmony_client.result_urls(job_id, link_type=LinkType.s3)\nurls = list(results)\nurl = urls[0]\n", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\nYou're now authenticated with NASA Earthdata Login\nUsing token with expiration date: 08/07/2023\nUsing .netrc file for EDL\n Opening 18 granules, approx size: 0.0 GB\nSUBMITTING | : 0%| | 0/18 [00:00\nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\n", + "history_begin_time" : 1686684363113, + "history_end_time" : 1686684454073, + "history_notes" : null, + "history_process" : "cgvhiy", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "sseb6y2m8fy", + "history_input" : "# Suppress warnings\nimport os\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs\nimport matplotlib.pyplot as plt\nfrom earth_access_authenticate import *\n\ncreds = harmony_client.aws_credentials()\ns3_fs = s3fs.S3FileSystem(\n key=creds['aws_access_key_id'],\n secret=creds['aws_secret_access_key'],\n token=creds['aws_session_token'],\n client_kwargs={'region_name':'us-west-2'},\n)\nf = s3_fs.open(url, mode='rb')\nds = xr.open_dataset(f)\nds.analysed_sst.plot()\nhome_dir = os.path.expanduser('~')\nplt.savefig(os.path.join(home_dir, 'plot2.png'))", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\nYou're now authenticated with NASA Earthdata Login\nUsing token with expiration date: 08/07/2023\nUsing .netrc file for EDL\n Opening 18 granules, approx size: 0.0 GB\nSUBMITTING | : 0%| | 0/18 [00:00\nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\n", + "history_begin_time" : 1686684455618, + "history_end_time" : 1686684543773, + "history_notes" : null, + "history_process" : "1b4ko0", + "host_id" : "100001", + "indicator" : "Done" +}] diff --git a/history/process_e57twj.json b/history/process_e57twj.json index 587011b..ad16030 100644 --- a/history/process_e57twj.json +++ b/history/process_e57twj.json @@ -1,4 +1,34 @@ [{ + "history_id" : "agb7rrec49u", + "history_input" : "from earth_data_utils import *\n\ndef search_ssh():\n auth_earthaccess()\n results = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-09-30\"),\n )\n return results\n\ndef plot_subset(ds_subset):\n ds_subset.plot(figsize=(12,6), x='Longitude', y='Latitude')\n home_dir = os.path.expanduser('~')\n \n file_name = f\"geoweaver_plot_{str(uuid.uuid4())}.png\"\n save_file_path = os.path.join(home_dir, file_name)\n plt.savefig(save_file_path)\n print(f\"new figure is saved to {save_file_path}\")\n\nwith get_dataset(search_ssh()) as ds:\n subset = ds[\"SLA\"].sel(Latitude=slice(-79, 79), \n Longitude=slice(100,300)).std('Time')\n plot_subset(subset)\n", + "history_output" : "Running", + "history_begin_time" : 1687332374872, + "history_end_time" : 1687332374761, + "history_notes" : null, + "history_process" : "e57twj", + "host_id" : "100001", + "indicator" : "Running" +},{ + "history_id" : "ed1lczm7cgh", + "history_input" : "from earth_data_utils import *\n\ndef search_ssh():\n auth_earthaccess()\n results = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-09-30\"),\n )\n return results\n\ndef plot_subset(ds_subset):\n ds_subset.plot(figsize=(12,6), x='Longitude', y='Latitude')\n home_dir = os.path.expanduser('~')\n \n file_name = f\"geoweaver_plot_{str(uuid.uuid4())}.png\"\n save_file_path = os.path.join(home_dir, file_name)\n plt.savefig(save_file_path)\n print(f\"new figure is saved to {save_file_path}\")\n\nwith get_dataset(search_ssh()) as ds:\n subset = ds[\"SLA\"].sel(Latitude=slice(-79, 79), \n Longitude=slice(100,300)).std('Time')\n plot_subset(subset)\n", + "history_output" : "You're now authenticated with NASA Earthdata Login\nUsing token with expiration date: 08/19/2023\nUsing .netrc file for EDL\nGranules found: 18\n Opening 18 granules, approx size: 0.0 GB\nQUEUEING TASKS | : 0%| | 0/18 [00:00=1.1.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from geopandas) (2.0.2)\nRequirement already satisfied: fiona>=1.8.19 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from geopandas) (1.9.4.post1)\nRequirement already satisfied: shapely>=1.7.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from geopandas) (2.0.1)\nRequirement already satisfied: packaging in /Users/joe/Library/Python/3.9/lib/python/site-packages (from geopandas) (21.3)\nRequirement already satisfied: pyproj>=3.0.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from geopandas) (3.6.0)\nRequirement already satisfied: multimethod>=1.8 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from earthaccess) (1.9.1)\nRequirement already satisfied: tinynetrc<2.0.0,>=1.3.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from earthaccess) (1.3.1)\nRequirement already satisfied: python-cmr>=0.7 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from earthaccess) (0.7.0)\nRequirement already satisfied: requests<3.0.0,>=2.26 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from earthaccess) (2.28.2)\nRequirement already satisfied: fsspec>=2022.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from earthaccess) (2023.6.0)\nRequirement already satisfied: pqdm>=0.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from earthaccess) (0.2.0)\nRequirement already satisfied: numpy>=1.21 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from xarray) (1.24.3)\nRequirement already satisfied: progressbar2~=3.55.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from harmony-py) (3.55.0)\nRequirement already satisfied: sphinxcontrib-napoleon~=0.7 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from harmony-py) (0.7)\nRequirement already satisfied: python-dotenv~=0.20.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from harmony-py) (0.20.0)\nRequirement already satisfied: curlify~=2.2.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from harmony-py) (2.2.1)\nRequirement already satisfied: python-dateutil~=2.8.2 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from harmony-py) (2.8.2)\nRequirement already satisfied: aiohttp!=4.0.0a0,!=4.0.0a1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from s3fs) (3.8.4)\nRequirement already satisfied: aiobotocore~=2.5.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from s3fs) (2.5.0)\nRequirement already satisfied: botocore<1.29.77,>=1.29.76 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiobotocore~=2.5.0->s3fs) (1.29.76)\nRequirement already satisfied: wrapt>=1.10.10 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiobotocore~=2.5.0->s3fs) (1.15.0)\nRequirement already satisfied: aioitertools>=0.5.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiobotocore~=2.5.0->s3fs) (0.11.0)\nRequirement already satisfied: aiosignal>=1.1.2 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs) (1.3.1)\nRequirement already satisfied: attrs>=17.3.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs) (23.1.0)\nRequirement already satisfied: frozenlist>=1.1.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs) (1.3.3)\nRequirement already satisfied: charset-normalizer<4.0,>=2.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs) (3.1.0)\nRequirement already satisfied: multidict<7.0,>=4.5 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs) (6.0.4)\nRequirement already satisfied: async-timeout<5.0,>=4.0.0a3 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs) (4.0.2)\nRequirement already satisfied: yarl<2.0,>=1.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs) (1.9.2)\nRequirement already satisfied: typing_extensions>=4.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aioitertools>=0.5.1->aiobotocore~=2.5.0->s3fs) (4.6.3)\nRequirement already satisfied: urllib3<1.27,>=1.25.4 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from botocore<1.29.77,>=1.29.76->aiobotocore~=2.5.0->s3fs) (1.26.15)\nRequirement already satisfied: jmespath<2.0.0,>=0.7.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from botocore<1.29.77,>=1.29.76->aiobotocore~=2.5.0->s3fs) (1.0.1)\nRequirement already satisfied: six in /Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.9/lib/python3.9/site-packages (from fiona>=1.8.19->geopandas) (1.15.0)\nRequirement already satisfied: cligj>=0.5 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from fiona>=1.8.19->geopandas) (0.7.2)\nRequirement already satisfied: click~=8.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from fiona>=1.8.19->geopandas) (8.1.3)\nRequirement already satisfied: importlib-metadata in /Users/joe/Library/Python/3.9/lib/python/site-packages (from fiona>=1.8.19->geopandas) (6.6.0)\nRequirement already satisfied: click-plugins>=1.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from fiona>=1.8.19->geopandas) (1.1.1)\nRequirement already satisfied: certifi in /Users/joe/Library/Python/3.9/lib/python/site-packages (from fiona>=1.8.19->geopandas) (2022.12.7)\nRequirement already satisfied: pyparsing!=3.0.5,>=2.0.2 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from packaging->geopandas) (3.0.9)\nRequirement already satisfied: tzdata>=2022.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from pandas>=1.1.0->geopandas) (2023.3)\nRequirement already satisfied: pytz>=2020.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from pandas>=1.1.0->geopandas) (2023.3)\nRequirement already satisfied: bounded-pool-executor in /Users/joe/Library/Python/3.9/lib/python/site-packages (from pqdm>=0.1->earthaccess) (0.0.3)\nRequirement already satisfied: tqdm in /Users/joe/Library/Python/3.9/lib/python/site-packages (from pqdm>=0.1->earthaccess) (4.65.0)\nRequirement already satisfied: python-utils>=2.3.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from progressbar2~=3.55.0->harmony-py) (3.6.1)\nRequirement already satisfied: idna<4,>=2.5 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from requests<3.0.0,>=2.26->earthaccess) (3.4)\nRequirement already satisfied: pockets>=0.3 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from sphinxcontrib-napoleon~=0.7->harmony-py) (0.9.1)\nRequirement already satisfied: zipp>=0.5 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from importlib-metadata->fiona>=1.8.19->geopandas) (3.15.0)\nWARNING: You are using pip version 21.2.4; however, version 23.1.2 is available.\nYou should consider upgrading via the '/Applications/Xcode.app/Contents/Developer/usr/bin/python3 -m pip install --upgrade pip' command.\n", + "history_begin_time" : 1687332370741, + "history_end_time" : 1687332373198, + "history_notes" : null, + "history_process" : "ru79i2", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "ced80h6vr3r", + "history_input" : "#!/bin/bash\npip3 install geopandas earthaccess xarray harmony-py s3fs\n", + "history_output" : "Defaulting to user installation because normal site-packages is not writeable\nRequirement already satisfied: geopandas in /Users/joe/Library/Python/3.9/lib/python/site-packages (0.13.2)\nRequirement already satisfied: earthaccess in /Users/joe/Library/Python/3.9/lib/python/site-packages (0.5.2)\nRequirement already satisfied: xarray in /Users/joe/Library/Python/3.9/lib/python/site-packages (2023.5.0)\nRequirement already satisfied: harmony-py in /Users/joe/Library/Python/3.9/lib/python/site-packages (0.4.9)\nRequirement already satisfied: s3fs in /Users/joe/Library/Python/3.9/lib/python/site-packages (2023.6.0)\nRequirement already satisfied: packaging in /Users/joe/Library/Python/3.9/lib/python/site-packages (from geopandas) (21.3)\nRequirement already satisfied: shapely>=1.7.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from geopandas) (2.0.1)\nRequirement already satisfied: pandas>=1.1.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from geopandas) (2.0.2)\nRequirement already satisfied: fiona>=1.8.19 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from geopandas) (1.9.4.post1)\nRequirement already satisfied: pyproj>=3.0.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from geopandas) (3.6.0)\nRequirement already satisfied: multimethod>=1.8 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from earthaccess) (1.9.1)\nRequirement already satisfied: tinynetrc<2.0.0,>=1.3.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from earthaccess) (1.3.1)\nRequirement already satisfied: requests<3.0.0,>=2.26 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from earthaccess) (2.28.2)\nRequirement already satisfied: python-cmr>=0.7 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from earthaccess) (0.7.0)\nRequirement already satisfied: pqdm>=0.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from earthaccess) (0.2.0)\nRequirement already satisfied: fsspec>=2022.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from earthaccess) (2023.6.0)\nRequirement already satisfied: numpy>=1.21 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from xarray) (1.24.3)\nRequirement already satisfied: progressbar2~=3.55.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from harmony-py) (3.55.0)\nRequirement already satisfied: sphinxcontrib-napoleon~=0.7 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from harmony-py) (0.7)\nRequirement already satisfied: python-dotenv~=0.20.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from harmony-py) (0.20.0)\nRequirement already satisfied: python-dateutil~=2.8.2 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from harmony-py) (2.8.2)\nRequirement already satisfied: curlify~=2.2.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from harmony-py) (2.2.1)\nRequirement already satisfied: aiobotocore~=2.5.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from s3fs) (2.5.0)\nRequirement already satisfied: aiohttp!=4.0.0a0,!=4.0.0a1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from s3fs) (3.8.4)\nRequirement already satisfied: aioitertools>=0.5.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiobotocore~=2.5.0->s3fs) (0.11.0)\nRequirement already satisfied: botocore<1.29.77,>=1.29.76 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiobotocore~=2.5.0->s3fs) (1.29.76)\nRequirement already satisfied: wrapt>=1.10.10 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiobotocore~=2.5.0->s3fs) (1.15.0)\nRequirement already satisfied: attrs>=17.3.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs) (23.1.0)\nRequirement already satisfied: charset-normalizer<4.0,>=2.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs) (3.1.0)\nRequirement already satisfied: multidict<7.0,>=4.5 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs) (6.0.4)\nRequirement already satisfied: frozenlist>=1.1.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs) (1.3.3)\nRequirement already satisfied: async-timeout<5.0,>=4.0.0a3 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs) (4.0.2)\nRequirement already satisfied: yarl<2.0,>=1.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs) (1.9.2)\nRequirement already satisfied: aiosignal>=1.1.2 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs) (1.3.1)\nRequirement already satisfied: typing_extensions>=4.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aioitertools>=0.5.1->aiobotocore~=2.5.0->s3fs) (4.6.3)\nRequirement already satisfied: urllib3<1.27,>=1.25.4 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from botocore<1.29.77,>=1.29.76->aiobotocore~=2.5.0->s3fs) (1.26.15)\nRequirement already satisfied: jmespath<2.0.0,>=0.7.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from botocore<1.29.77,>=1.29.76->aiobotocore~=2.5.0->s3fs) (1.0.1)\nRequirement already satisfied: certifi in /Users/joe/Library/Python/3.9/lib/python/site-packages (from fiona>=1.8.19->geopandas) (2022.12.7)\nRequirement already satisfied: click~=8.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from fiona>=1.8.19->geopandas) (8.1.3)\nRequirement already satisfied: cligj>=0.5 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from fiona>=1.8.19->geopandas) (0.7.2)\nRequirement already satisfied: six in /Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.9/lib/python3.9/site-packages (from fiona>=1.8.19->geopandas) (1.15.0)\nRequirement already satisfied: click-plugins>=1.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from fiona>=1.8.19->geopandas) (1.1.1)\nRequirement already satisfied: importlib-metadata in /Users/joe/Library/Python/3.9/lib/python/site-packages (from fiona>=1.8.19->geopandas) (6.6.0)\nRequirement already satisfied: pyparsing!=3.0.5,>=2.0.2 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from packaging->geopandas) (3.0.9)\nRequirement already satisfied: pytz>=2020.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from pandas>=1.1.0->geopandas) (2023.3)\nRequirement already satisfied: tzdata>=2022.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from pandas>=1.1.0->geopandas) (2023.3)\nRequirement already satisfied: tqdm in /Users/joe/Library/Python/3.9/lib/python/site-packages (from pqdm>=0.1->earthaccess) (4.65.0)\nRequirement already satisfied: bounded-pool-executor in /Users/joe/Library/Python/3.9/lib/python/site-packages (from pqdm>=0.1->earthaccess) (0.0.3)\nRequirement already satisfied: python-utils>=2.3.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from progressbar2~=3.55.0->harmony-py) (3.6.1)\nRequirement already satisfied: idna<4,>=2.5 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from requests<3.0.0,>=2.26->earthaccess) (3.4)\nRequirement already satisfied: pockets>=0.3 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from sphinxcontrib-napoleon~=0.7->harmony-py) (0.9.1)\nRequirement already satisfied: zipp>=0.5 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from importlib-metadata->fiona>=1.8.19->geopandas) (3.15.0)\nWARNING: You are using pip version 21.2.4; however, version 23.1.2 is available.\nYou should consider upgrading via the '/Applications/Xcode.app/Contents/Developer/usr/bin/python3 -m pip install --upgrade pip' command.\n", + "history_begin_time" : 1687330906800, + "history_end_time" : 1687330909250, + "history_notes" : null, + "history_process" : "ru79i2", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "uwe21ghcv85", + "history_input" : "#!/bin/bash\npip3 install geopandas earthaccess xarray harmony-py s3fs\n", + "history_output" : "Defaulting to user installation because normal site-packages is not writeable\nRequirement already satisfied: geopandas in /Users/joe/Library/Python/3.9/lib/python/site-packages (0.13.2)\nRequirement already satisfied: earthaccess in /Users/joe/Library/Python/3.9/lib/python/site-packages (0.5.2)\nRequirement already satisfied: xarray in /Users/joe/Library/Python/3.9/lib/python/site-packages (2023.5.0)\nRequirement already satisfied: harmony-py in /Users/joe/Library/Python/3.9/lib/python/site-packages (0.4.9)\nRequirement already satisfied: s3fs in /Users/joe/Library/Python/3.9/lib/python/site-packages (2023.6.0)\nRequirement already satisfied: packaging in /Users/joe/Library/Python/3.9/lib/python/site-packages (from geopandas) (21.3)\nRequirement already satisfied: pandas>=1.1.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from geopandas) (2.0.2)\nRequirement already satisfied: shapely>=1.7.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from geopandas) (2.0.1)\nRequirement already satisfied: pyproj>=3.0.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from geopandas) (3.6.0)\nRequirement already satisfied: fiona>=1.8.19 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from geopandas) (1.9.4.post1)\nRequirement already satisfied: fsspec>=2022.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from earthaccess) (2023.6.0)\nRequirement already satisfied: python-cmr>=0.7 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from earthaccess) (0.7.0)\nRequirement already satisfied: multimethod>=1.8 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from earthaccess) (1.9.1)\nRequirement already satisfied: pqdm>=0.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from earthaccess) (0.2.0)\nRequirement already satisfied: tinynetrc<2.0.0,>=1.3.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from earthaccess) (1.3.1)\nRequirement already satisfied: requests<3.0.0,>=2.26 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from earthaccess) (2.28.2)\nRequirement already satisfied: numpy>=1.21 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from xarray) (1.24.3)\nRequirement already satisfied: sphinxcontrib-napoleon~=0.7 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from harmony-py) (0.7)\nRequirement already satisfied: python-dateutil~=2.8.2 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from harmony-py) (2.8.2)\nRequirement already satisfied: curlify~=2.2.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from harmony-py) (2.2.1)\nRequirement already satisfied: progressbar2~=3.55.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from harmony-py) (3.55.0)\nRequirement already satisfied: python-dotenv~=0.20.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from harmony-py) (0.20.0)\nRequirement already satisfied: aiobotocore~=2.5.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from s3fs) (2.5.0)\nRequirement already satisfied: aiohttp!=4.0.0a0,!=4.0.0a1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from s3fs) (3.8.4)\nRequirement already satisfied: wrapt>=1.10.10 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiobotocore~=2.5.0->s3fs) (1.15.0)\nRequirement already satisfied: aioitertools>=0.5.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiobotocore~=2.5.0->s3fs) (0.11.0)\nRequirement already satisfied: botocore<1.29.77,>=1.29.76 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiobotocore~=2.5.0->s3fs) (1.29.76)\nRequirement already satisfied: attrs>=17.3.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs) (23.1.0)\nRequirement already satisfied: yarl<2.0,>=1.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs) (1.9.2)\nRequirement already satisfied: frozenlist>=1.1.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs) (1.3.3)\nRequirement already satisfied: async-timeout<5.0,>=4.0.0a3 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs) (4.0.2)\nRequirement already satisfied: multidict<7.0,>=4.5 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs) (6.0.4)\nRequirement already satisfied: charset-normalizer<4.0,>=2.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs) (3.1.0)\nRequirement already satisfied: aiosignal>=1.1.2 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs) (1.3.1)\nRequirement already satisfied: typing_extensions>=4.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aioitertools>=0.5.1->aiobotocore~=2.5.0->s3fs) (4.6.3)\nRequirement already satisfied: urllib3<1.27,>=1.25.4 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from botocore<1.29.77,>=1.29.76->aiobotocore~=2.5.0->s3fs) (1.26.15)\nRequirement already satisfied: jmespath<2.0.0,>=0.7.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from botocore<1.29.77,>=1.29.76->aiobotocore~=2.5.0->s3fs) (1.0.1)\nRequirement already satisfied: click~=8.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from fiona>=1.8.19->geopandas) (8.1.3)\nRequirement already satisfied: six in /Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.9/lib/python3.9/site-packages (from fiona>=1.8.19->geopandas) (1.15.0)\nRequirement already satisfied: cligj>=0.5 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from fiona>=1.8.19->geopandas) (0.7.2)\nRequirement already satisfied: certifi in /Users/joe/Library/Python/3.9/lib/python/site-packages (from fiona>=1.8.19->geopandas) (2022.12.7)\nRequirement already satisfied: importlib-metadata in /Users/joe/Library/Python/3.9/lib/python/site-packages (from fiona>=1.8.19->geopandas) (6.6.0)\nRequirement already satisfied: click-plugins>=1.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from fiona>=1.8.19->geopandas) (1.1.1)\nRequirement already satisfied: pyparsing!=3.0.5,>=2.0.2 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from packaging->geopandas) (3.0.9)\nRequirement already satisfied: tzdata>=2022.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from pandas>=1.1.0->geopandas) (2023.3)\nRequirement already satisfied: pytz>=2020.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from pandas>=1.1.0->geopandas) (2023.3)\nRequirement already satisfied: tqdm in /Users/joe/Library/Python/3.9/lib/python/site-packages (from pqdm>=0.1->earthaccess) (4.65.0)\nRequirement already satisfied: bounded-pool-executor in /Users/joe/Library/Python/3.9/lib/python/site-packages (from pqdm>=0.1->earthaccess) (0.0.3)\nRequirement already satisfied: python-utils>=2.3.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from progressbar2~=3.55.0->harmony-py) (3.6.1)\nRequirement already satisfied: idna<4,>=2.5 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from requests<3.0.0,>=2.26->earthaccess) (3.4)\nRequirement already satisfied: pockets>=0.3 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from sphinxcontrib-napoleon~=0.7->harmony-py) (0.9.1)\nRequirement already satisfied: zipp>=0.5 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from importlib-metadata->fiona>=1.8.19->geopandas) (3.15.0)\nWARNING: You are using pip version 21.2.4; however, version 23.1.2 is available.\nYou should consider upgrading via the '/Applications/Xcode.app/Contents/Developer/usr/bin/python3 -m pip install --upgrade pip' command.\n", + "history_begin_time" : 1687322034428, + "history_end_time" : 1687322036869, + "history_notes" : null, + "history_process" : "ru79i2", + "host_id" : "100001", + "indicator" : "Done" +},{ "history_id" : "57mk6boxwwg", "history_input" : "#!/bin/bash\npip3 install geopandas earthaccess xarray harmony-py s3fs\n", "history_output" : "Defaulting to user installation because normal site-packages is not writeable\nRequirement already satisfied: geopandas in /Users/joe/Library/Python/3.9/lib/python/site-packages (0.13.2)\nRequirement already satisfied: earthaccess in /Users/joe/Library/Python/3.9/lib/python/site-packages (0.5.2)\nRequirement already satisfied: xarray in /Users/joe/Library/Python/3.9/lib/python/site-packages (2023.5.0)\nRequirement already satisfied: harmony-py in /Users/joe/Library/Python/3.9/lib/python/site-packages (0.4.9)\nRequirement already satisfied: s3fs in /Users/joe/Library/Python/3.9/lib/python/site-packages (2023.6.0)\nRequirement already satisfied: shapely>=1.7.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from geopandas) (2.0.1)\nRequirement already satisfied: fiona>=1.8.19 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from geopandas) (1.9.4.post1)\nRequirement already satisfied: pandas>=1.1.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from geopandas) (2.0.2)\nRequirement already satisfied: pyproj>=3.0.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from geopandas) (3.6.0)\nRequirement already satisfied: packaging in /Users/joe/Library/Python/3.9/lib/python/site-packages (from geopandas) (21.3)\nRequirement already satisfied: pqdm>=0.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from earthaccess) (0.2.0)\nRequirement already satisfied: requests<3.0.0,>=2.26 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from earthaccess) (2.28.2)\nRequirement already satisfied: multimethod>=1.8 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from earthaccess) (1.9.1)\nRequirement already satisfied: tinynetrc<2.0.0,>=1.3.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from earthaccess) (1.3.1)\nRequirement already satisfied: python-cmr>=0.7 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from earthaccess) (0.7.0)\nRequirement already satisfied: fsspec>=2022.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from earthaccess) (2023.6.0)\nRequirement already satisfied: numpy>=1.21 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from xarray) (1.24.3)\nRequirement already satisfied: python-dotenv~=0.20.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from harmony-py) (0.20.0)\nRequirement already satisfied: curlify~=2.2.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from harmony-py) (2.2.1)\nRequirement already satisfied: python-dateutil~=2.8.2 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from harmony-py) (2.8.2)\nRequirement already satisfied: progressbar2~=3.55.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from harmony-py) (3.55.0)\nRequirement already satisfied: sphinxcontrib-napoleon~=0.7 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from harmony-py) (0.7)\nRequirement already satisfied: aiohttp!=4.0.0a0,!=4.0.0a1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from s3fs) (3.8.4)\nRequirement already satisfied: aiobotocore~=2.5.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from s3fs) (2.5.0)\nRequirement already satisfied: botocore<1.29.77,>=1.29.76 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiobotocore~=2.5.0->s3fs) (1.29.76)\nRequirement already satisfied: wrapt>=1.10.10 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiobotocore~=2.5.0->s3fs) (1.15.0)\nRequirement already satisfied: aioitertools>=0.5.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiobotocore~=2.5.0->s3fs) (0.11.0)\nRequirement already satisfied: frozenlist>=1.1.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs) (1.3.3)\nRequirement already satisfied: yarl<2.0,>=1.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs) (1.9.2)\nRequirement already satisfied: attrs>=17.3.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs) (23.1.0)\nRequirement already satisfied: charset-normalizer<4.0,>=2.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs) (3.1.0)\nRequirement already satisfied: aiosignal>=1.1.2 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs) (1.3.1)\nRequirement already satisfied: multidict<7.0,>=4.5 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs) (6.0.4)\nRequirement already satisfied: async-timeout<5.0,>=4.0.0a3 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs) (4.0.2)\nRequirement already satisfied: typing_extensions>=4.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from aioitertools>=0.5.1->aiobotocore~=2.5.0->s3fs) (4.6.3)\nRequirement already satisfied: jmespath<2.0.0,>=0.7.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from botocore<1.29.77,>=1.29.76->aiobotocore~=2.5.0->s3fs) (1.0.1)\nRequirement already satisfied: urllib3<1.27,>=1.25.4 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from botocore<1.29.77,>=1.29.76->aiobotocore~=2.5.0->s3fs) (1.26.15)\nRequirement already satisfied: click~=8.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from fiona>=1.8.19->geopandas) (8.1.3)\nRequirement already satisfied: cligj>=0.5 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from fiona>=1.8.19->geopandas) (0.7.2)\nRequirement already satisfied: importlib-metadata in /Users/joe/Library/Python/3.9/lib/python/site-packages (from fiona>=1.8.19->geopandas) (6.6.0)\nRequirement already satisfied: certifi in /Users/joe/Library/Python/3.9/lib/python/site-packages (from fiona>=1.8.19->geopandas) (2022.12.7)\nRequirement already satisfied: click-plugins>=1.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from fiona>=1.8.19->geopandas) (1.1.1)\nRequirement already satisfied: six in /Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.9/lib/python3.9/site-packages (from fiona>=1.8.19->geopandas) (1.15.0)\nRequirement already satisfied: pyparsing!=3.0.5,>=2.0.2 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from packaging->geopandas) (3.0.9)\nRequirement already satisfied: pytz>=2020.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from pandas>=1.1.0->geopandas) (2023.3)\nRequirement already satisfied: tzdata>=2022.1 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from pandas>=1.1.0->geopandas) (2023.3)\nRequirement already satisfied: tqdm in /Users/joe/Library/Python/3.9/lib/python/site-packages (from pqdm>=0.1->earthaccess) (4.65.0)\nRequirement already satisfied: bounded-pool-executor in /Users/joe/Library/Python/3.9/lib/python/site-packages (from pqdm>=0.1->earthaccess) (0.0.3)\nRequirement already satisfied: python-utils>=2.3.0 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from progressbar2~=3.55.0->harmony-py) (3.6.1)\nRequirement already satisfied: idna<4,>=2.5 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from requests<3.0.0,>=2.26->earthaccess) (3.4)\nRequirement already satisfied: pockets>=0.3 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from sphinxcontrib-napoleon~=0.7->harmony-py) (0.9.1)\nRequirement already satisfied: zipp>=0.5 in /Users/joe/Library/Python/3.9/lib/python/site-packages (from importlib-metadata->fiona>=1.8.19->geopandas) (3.15.0)\nWARNING: You are using pip version 21.2.4; however, version 23.1.2 is available.\nYou should consider upgrading via the '/Applications/Xcode.app/Contents/Developer/usr/bin/python3 -m pip install --upgrade pip' command.\n", diff --git a/history/process_wttkvt.json b/history/process_wttkvt.json index 9705c1f..dcf0895 100644 --- a/history/process_wttkvt.json +++ b/history/process_wttkvt.json @@ -1,4 +1,34 @@ [{ + "history_id" : "617pj1d8nis", + "history_input" : "No code saved", + "history_output" : "Skipped", + "history_begin_time" : 1687332369776, + "history_end_time" : 1687332369776, + "history_notes" : null, + "history_process" : "wttkvt", + "host_id" : "100001", + "indicator" : "Skipped" +},{ + "history_id" : "1h6mwhjgffr", + "history_input" : "No code saved", + "history_output" : "Skipped", + "history_begin_time" : 1687330905835, + "history_end_time" : 1687330905835, + "history_notes" : null, + "history_process" : "wttkvt", + "host_id" : "100001", + "indicator" : "Skipped" +},{ + "history_id" : "lhk2du7fuoq", + "history_input" : "No code saved", + "history_output" : "Skipped", + "history_begin_time" : 1687322033464, + "history_end_time" : 1687322033464, + "history_notes" : null, + "history_process" : "wttkvt", + "host_id" : "100001", + "indicator" : "Skipped" +},{ "history_id" : "n6qr3njqxfl", "history_input" : "No code saved", "history_output" : "Skipped", diff --git a/history/u6EibxNEZg5Or4d4gZ.json b/history/u6EibxNEZg5Or4d4gZ.json new file mode 100644 index 0000000..55ed752 --- /dev/null +++ b/history/u6EibxNEZg5Or4d4gZ.json @@ -0,0 +1,41 @@ +[{ + "history_id" : "6n080fci3ip", + "history_input" : "\n\n\n# Suppress warnings\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\n", + "history_begin_time" : 1686629601104, + "history_end_time" : 1686631556054, + "history_notes" : null, + "history_process" : "wttkvt", + "host_id" : "100001", + "indicator" : "Stopped" +},{ + "history_id" : "ijf85fbchyu", + "history_input" : "from earth_data_utils import *\n\nssh_short_name = \"SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205\"\n\nresults = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-09-30\"),\n)", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\n", + "history_begin_time" : 1686629611056, + "history_end_time" : 1686631556056, + "history_notes" : null, + "history_process" : "yvo1ds", + "host_id" : "100001", + "indicator" : "Stopped" +},{ + "history_id" : "4vcjckvbwqe", + "history_input" : "from search_data import *\n\nsst_short_name=\"MUR-JPL-L4-GLOB-v4.1\"\n\nresults = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-09-30\"),\n)\n\nauth = earthaccess.login(strategy=\"netrc\", persist=True)\nds = xr.open_mfdataset(earthaccess.open(results))\ngeojson_path = '/home/jovyan/gulf.json'\ngdf = gpd.read_file(geojson_path) #Return a GeoDataFrame object\n\n\nharmony_client = Client()\nsst_short_name=\"MUR-JPL-L4-GLOB-v4.1\"\n\nrequest = Request(\n collection=Collection(id=sst_short_name),\n shape=geojson_path,\n temporal={\n 'start': dt.datetime(2021, 8, 1, 1),\n 'stop': dt.datetime(2021, 8, 1, 2) \n },\n)\njob_id = harmony_client.submit(request)\nharmony_client.wait_for_processing(job_id, show_progress=True)\ndata = harmony_client.result_json(job_id)\nresults = harmony_client.result_urls(job_id, link_type=LinkType.s3)\nurls = list(results)\nurl = urls[0]\n", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\nGranules found: 18\nYou're now authenticated with NASA Earthdata Login\nUsing token with expiration date: 08/07/2023\nUsing .netrc file for EDL\n Opening 18 granules, approx size: 0.0 GB\nSUBMITTING | : 0%| | 0/18 [00:00\nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\n", + "history_begin_time" : 1686629621710, + "history_end_time" : 1686631556058, + "history_notes" : null, + "history_process" : "cgvhiy", + "host_id" : "100001", + "indicator" : "Stopped" +},{ + "history_id" : "q5lfxjata7f", + "history_input" : "import matplotlib.pyplot as plt\nfrom earth_access_authenticate import *\n\ntry:\n creds = harmony_client.aws_credentials()\n s3_fs = s3fs.S3FileSystem(\n key=creds['aws_access_key_id'],\n secret=creds['aws_secret_access_key'],\n token=creds['aws_session_token'],\n client_kwargs={'region_name':'us-west-2'},\n )\n f = s3_fs.open(url, mode='rb')\n ds = xr.open_dataset(f)\n ds.analysed_sst.plot()\n plt.savefig('plot.png')\nexcept Exception as e:\n print('please check the write permissions to directory', e)", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\nGranules found: 18\nYou're now authenticated with NASA Earthdata Login\nUsing token with expiration date: 08/07/2023\nUsing .netrc file for EDL\n Opening 18 granules, approx size: 0.0 GB\nSUBMITTING | : 0%| | 0/18 [00:00\nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\n", + "history_begin_time" : 1686630059047, + "history_end_time" : 1686631556059, + "history_notes" : null, + "history_process" : "1b4ko0", + "host_id" : "100001", + "indicator" : "Stopped" +}] diff --git a/history/unlenty6p8qrl03z42.json b/history/unlenty6p8qrl03z42.json new file mode 100644 index 0000000..387457a --- /dev/null +++ b/history/unlenty6p8qrl03z42.json @@ -0,0 +1,41 @@ +[{ + "history_id" : "27ywqplqama", + "history_input" : "\n\n\n# Suppress warnings\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\n", + "history_begin_time" : 1686665474552, + "history_end_time" : 1686665483282, + "history_notes" : null, + "history_process" : "wttkvt", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "1g4ily9u0x7", + "history_input" : "from earth_data_utils import *\n\nssh_short_name = \"SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205\"\n\nresults = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-09-30\"),\n)", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\n", + "history_begin_time" : 1686665484553, + "history_end_time" : 1686665494470, + "history_notes" : null, + "history_process" : "yvo1ds", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "01t3nw7u2nf", + "history_input" : "from search_data import *\n\nsst_short_name=\"MUR-JPL-L4-GLOB-v4.1\"\n\nresults = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-09-30\"),\n)\n\nauth = earthaccess.login(strategy=\"netrc\", persist=True)\nds = xr.open_mfdataset(earthaccess.open(results))\ngeojson_path = '/home/jovyan/gulf.json'\ngdf = gpd.read_file(geojson_path) #Return a GeoDataFrame object\n\n\nharmony_client = Client()\nsst_short_name=\"MUR-JPL-L4-GLOB-v4.1\"\n\nrequest = Request(\n collection=Collection(id=sst_short_name),\n shape=geojson_path,\n temporal={\n 'start': dt.datetime(2021, 8, 1, 1),\n 'stop': dt.datetime(2021, 8, 1, 2) \n },\n)\njob_id = harmony_client.submit(request)\nharmony_client.wait_for_processing(job_id, show_progress=False)\ndata = harmony_client.result_json(job_id)\nresults = harmony_client.result_urls(job_id, link_type=LinkType.s3)\nurls = list(results)\nurl = urls[0]\n", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\nGranules found: 18\nYou're now authenticated with NASA Earthdata Login\nUsing token with expiration date: 08/07/2023\nUsing .netrc file for EDL\n Opening 18 granules, approx size: 0.0 GB\nSUBMITTING | : 0%| | 0/18 [00:00\nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\n", + "history_begin_time" : 1686665496304, + "history_end_time" : 1686665672533, + "history_notes" : null, + "history_process" : "cgvhiy", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "o23ja6j5i9i", + "history_input" : "# Suppress warnings\nimport os\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs\nimport matplotlib.pyplot as plt\nfrom earth_access_authenticate import *\n\ncreds = harmony_client.aws_credentials()\ns3_fs = s3fs.S3FileSystem(\n key=creds['aws_access_key_id'],\n secret=creds['aws_secret_access_key'],\n token=creds['aws_session_token'],\n client_kwargs={'region_name':'us-west-2'},\n)\nf = s3_fs.open(url, mode='rb')\nds = xr.open_dataset(f)\nds.analysed_sst.plot()\nhome_dir = os.path.expanduser('~')\nplt.savefig(os.path.join(home_dir, 'plot2.png'))", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\nGranules found: 18\nYou're now authenticated with NASA Earthdata Login\nUsing token with expiration date: 08/07/2023\nUsing .netrc file for EDL\n Opening 18 granules, approx size: 0.0 GB\nSUBMITTING | : 0%| | 0/18 [00:00\nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\n", + "history_begin_time" : 1686665674502, + "history_end_time" : 1686665767185, + "history_notes" : null, + "history_process" : "1b4ko0", + "host_id" : "100001", + "indicator" : "Done" +}] diff --git a/history/v97kvdt3cfum1172y2.json b/history/v97kvdt3cfum1172y2.json new file mode 100644 index 0000000..b92443a --- /dev/null +++ b/history/v97kvdt3cfum1172y2.json @@ -0,0 +1,41 @@ +[{ + "history_id" : "qrdgeq35rzb", + "history_input" : "\n\n\n# Suppress warnings\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs", + "history_output" : "Traceback (most recent call last):\n File \"/Users/joe/gw-workspace/qrdgeq35rzb/earth_data_utils.py\", line 10, in \n import earthaccess \nModuleNotFoundError: No module named 'earthaccess'\n", + "history_begin_time" : 1686759076017, + "history_end_time" : 1686759076500, + "history_notes" : null, + "history_process" : "wttkvt", + "host_id" : "100001", + "indicator" : "Failed" +},{ + "history_id" : "g1k064wc7gb", + "history_input" : "from earth_data_utils import *\n\nssh_short_name = \"SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205\"\n\nresults = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-09-30\"),\n)", + "history_output" : "Traceback (most recent call last):\n File \"/Users/joe/gw-workspace/g1k064wc7gb/search_data.py\", line 1, in \n from earth_data_utils import *\n File \"/Users/joe/gw-workspace/g1k064wc7gb/earth_data_utils.py\", line 10, in \n import earthaccess \nModuleNotFoundError: No module named 'earthaccess'\n", + "history_begin_time" : 1686759078023, + "history_end_time" : 1686759078172, + "history_notes" : null, + "history_process" : "yvo1ds", + "host_id" : "100001", + "indicator" : "Failed" +},{ + "history_id" : "p0kx8wg6123", + "history_input" : "from search_data import *\n\nsst_short_name=\"MUR-JPL-L4-GLOB-v4.1\"\n\nresults = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-09-30\"),\n)\n\nauth = earthaccess.login(strategy=\"netrc\", persist=True)\nds = xr.open_mfdataset(earthaccess.open(results))\ngeojson_path = '/home/jovyan/gulf.json'\ngdf = gpd.read_file(geojson_path) #Return a GeoDataFrame object\n\n\nharmony_client = Client()\nsst_short_name=\"MUR-JPL-L4-GLOB-v4.1\"\n\nrequest = Request(\n collection=Collection(id=sst_short_name),\n shape=geojson_path,\n temporal={\n 'start': dt.datetime(2021, 8, 1, 1),\n 'stop': dt.datetime(2021, 8, 1, 2) \n },\n)\njob_id = harmony_client.submit(request)\nharmony_client.wait_for_processing(job_id, show_progress=False)\ndata = harmony_client.result_json(job_id)\nresults = harmony_client.result_urls(job_id, link_type=LinkType.s3)\nurls = list(results)\nurl = urls[0]\n", + "history_output" : "Traceback (most recent call last):\n File \"/Users/joe/gw-workspace/p0kx8wg6123/earth_access_authenticate.py\", line 1, in \n from search_data import *\n File \"/Users/joe/gw-workspace/p0kx8wg6123/search_data.py\", line 1, in \n from earth_data_utils import *\n File \"/Users/joe/gw-workspace/p0kx8wg6123/earth_data_utils.py\", line 10, in \n import earthaccess \nModuleNotFoundError: No module named 'earthaccess'\n", + "history_begin_time" : 1686759079549, + "history_end_time" : 1686759079701, + "history_notes" : null, + "history_process" : "cgvhiy", + "host_id" : "100001", + "indicator" : "Failed" +},{ + "history_id" : "680j43ov10s", + "history_input" : "# Suppress warnings\nimport os\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs\nimport matplotlib.pyplot as plt\nfrom earth_access_authenticate import *\n\ncreds = harmony_client.aws_credentials()\ns3_fs = s3fs.S3FileSystem(\n key=creds['aws_access_key_id'],\n secret=creds['aws_secret_access_key'],\n token=creds['aws_session_token'],\n client_kwargs={'region_name':'us-west-2'},\n)\nf = s3_fs.open(url, mode='rb')\nds = xr.open_dataset(f)\nds.analysed_sst.plot()\nhome_dir = os.path.expanduser('~')\nplt.savefig(os.path.join(home_dir, 'plot2.png'))", + "history_output" : "Traceback (most recent call last):\n File \"/Users/joe/gw-workspace/680j43ov10s/s3_file_storage.py\", line 8, in \n import earthaccess \nModuleNotFoundError: No module named 'earthaccess'\n", + "history_begin_time" : 1686759081222, + "history_end_time" : 1686759081357, + "history_notes" : null, + "history_process" : "1b4ko0", + "host_id" : "100001", + "indicator" : "Failed" +}] diff --git a/history/xdc6fso7wkybrk71o7.json b/history/xdc6fso7wkybrk71o7.json new file mode 100644 index 0000000..51cf8f1 --- /dev/null +++ b/history/xdc6fso7wkybrk71o7.json @@ -0,0 +1,31 @@ +[{ + "history_id" : "uq7pxxct69k", + "history_input" : "\n\n\n# Suppress warnings\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\n", + "history_begin_time" : 1686682065623, + "history_end_time" : 1686682074275, + "history_notes" : null, + "history_process" : "wttkvt", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "lul2sozz4x1", + "history_input" : "from earth_data_utils import *\n\nssh_short_name = \"SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205\"\n\nsst_short_name=\"MUR-JPL-L4-GLOB-v4.1\"\n\nresults = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-09-30\"),\n)\n\nauth = earthaccess.login(strategy=\"netrc\", persist=True)\nds = xr.open_mfdataset(earthaccess.open(results))\ngeojson_path = '/home/jovyan/gulf.json'\ngdf = gpd.read_file(geojson_path) #Return a GeoDataFrame object\n\n\nharmony_client = Client()\nsst_short_name=\"MUR-JPL-L4-GLOB-v4.1\"\n\nrequest = Request(\n collection=Collection(id=sst_short_name),\n shape=geojson_path,\n temporal={\n 'start': dt.datetime(2021, 8, 1, 1),\n 'stop': dt.datetime(2021, 8, 1, 2) \n },\n)\njob_id = harmony_client.submit(request)\nharmony_client.wait_for_processing(job_id, show_progress=False)\ndata = harmony_client.result_json(job_id)\nresults = harmony_client.result_urls(job_id, link_type=LinkType.s3)\nurls = list(results)\nurl = urls[0]\n", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\nYou're now authenticated with NASA Earthdata Login\nUsing token with expiration date: 08/07/2023\nUsing .netrc file for EDL\n Opening 18 granules, approx size: 0.0 GB\nSUBMITTING | : 0%| | 0/18 [00:00\nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\n", + "history_begin_time" : 1686682075624, + "history_end_time" : 1686682231606, + "history_notes" : null, + "history_process" : "cgvhiy", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "qcwhsqh68ll", + "history_input" : "# Suppress warnings\nimport os\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs\nimport matplotlib.pyplot as plt\nfrom earth_access_authenticate import *\n\ncreds = harmony_client.aws_credentials()\ns3_fs = s3fs.S3FileSystem(\n key=creds['aws_access_key_id'],\n secret=creds['aws_secret_access_key'],\n token=creds['aws_session_token'],\n client_kwargs={'region_name':'us-west-2'},\n)\nf = s3_fs.open(url, mode='rb')\nds = xr.open_dataset(f)\nds.analysed_sst.plot()\nhome_dir = os.path.expanduser('~')\nplt.savefig(os.path.join(home_dir, 'plot2.png'))", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\nYou're now authenticated with NASA Earthdata Login\nUsing token with expiration date: 08/07/2023\nUsing .netrc file for EDL\n Opening 18 granules, approx size: 0.0 GB\nSUBMITTING | : 0%| | 0/18 [00:00\nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\n", + "history_begin_time" : 1686682233315, + "history_end_time" : 1686682444609, + "history_notes" : null, + "history_process" : "1b4ko0", + "host_id" : "100001", + "indicator" : "Done" +}] diff --git a/history/xsUiKqCumWr86iaEFQ.json b/history/xsUiKqCumWr86iaEFQ.json new file mode 100644 index 0000000..e5020d6 --- /dev/null +++ b/history/xsUiKqCumWr86iaEFQ.json @@ -0,0 +1,41 @@ +[{ + "history_id" : "yvx83lhph1j", + "history_input" : "\n\n\n# Suppress warnings\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\n", + "history_begin_time" : 1686633178181, + "history_end_time" : 1686633186380, + "history_notes" : null, + "history_process" : "wttkvt", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "h4fh5a8ni2n", + "history_input" : "from earth_data_utils import *\n\nssh_short_name = \"SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205\"\n\nresults = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-09-30\"),\n)", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\n", + "history_begin_time" : 1686633188207, + "history_end_time" : 1686633197371, + "history_notes" : null, + "history_process" : "yvo1ds", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "0o6dx0px27x", + "history_input" : "from search_data import *\n\nsst_short_name=\"MUR-JPL-L4-GLOB-v4.1\"\n\nresults = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-09-30\"),\n)\n\nauth = earthaccess.login(strategy=\"netrc\", persist=True)\nds = xr.open_mfdataset(earthaccess.open(results))\ngeojson_path = '/home/jovyan/gulf.json'\ngdf = gpd.read_file(geojson_path) #Return a GeoDataFrame object\n\n\nharmony_client = Client()\nsst_short_name=\"MUR-JPL-L4-GLOB-v4.1\"\n\nrequest = Request(\n collection=Collection(id=sst_short_name),\n shape=geojson_path,\n temporal={\n 'start': dt.datetime(2021, 8, 1, 1),\n 'stop': dt.datetime(2021, 8, 1, 2) \n },\n)\njob_id = harmony_client.submit(request)\nharmony_client.wait_for_processing(job_id, show_progress=False)\ndata = harmony_client.result_json(job_id)\nresults = harmony_client.result_urls(job_id, link_type=LinkType.s3)\nurls = list(results)\nurl = urls[0]\n", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\nGranules found: 18\nYou're now authenticated with NASA Earthdata Login\nUsing token with expiration date: 08/07/2023\nUsing .netrc file for EDL\n Opening 18 granules, approx size: 0.0 GB\nSUBMITTING | : 0%| | 0/18 [00:00\nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\n", + "history_begin_time" : 1686633198385, + "history_end_time" : 1686633271714, + "history_notes" : null, + "history_process" : "cgvhiy", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "6dlcc5ae923", + "history_input" : "# Suppress warnings\nimport os\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs\nimport matplotlib.pyplot as plt\nfrom earth_access_authenticate import *\n\ncreds = harmony_client.aws_credentials()\ns3_fs = s3fs.S3FileSystem(\n key=creds['aws_access_key_id'],\n secret=creds['aws_secret_access_key'],\n token=creds['aws_session_token'],\n client_kwargs={'region_name':'us-west-2'},\n)\nf = s3_fs.open(url, mode='rb')\nds = xr.open_dataset(f)\nds.analysed_sst.plot()\nhome_dir = os.path.expanduser('~')\nplt.savefig(os.path.join(home_dir, 'plot2.png'))", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\nGranules found: 18\nYou're now authenticated with NASA Earthdata Login\nUsing token with expiration date: 08/07/2023\nUsing .netrc file for EDL\n Opening 18 granules, approx size: 0.0 GB\nSUBMITTING | : 0%| | 0/18 [00:00\nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\n", + "history_begin_time" : 1686633273381, + "history_end_time" : 1686633337538, + "history_notes" : null, + "history_process" : "1b4ko0", + "host_id" : "100001", + "indicator" : "Done" +}] diff --git a/history/y2mnxktf5j68wxy68b.json b/history/y2mnxktf5j68wxy68b.json new file mode 100644 index 0000000..c7b295b --- /dev/null +++ b/history/y2mnxktf5j68wxy68b.json @@ -0,0 +1,21 @@ +[{ + "history_id" : "94ytissp88r", + "history_input" : "\n\n\n# Suppress warnings\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\n", + "history_begin_time" : 1686694030928, + "history_end_time" : 1686694039470, + "history_notes" : null, + "history_process" : "wttkvt", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "cdsm7ccw93t", + "history_input" : "from earth_data_utils import *\n\nssh_short_name = \"SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205\"\n\nsst_short_name=\"MUR-JPL-L4-GLOB-v4.1\"\n\nresults = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2020-07-01\", \"2020-09-30\"),\n)\n\nauth = earthaccess.login(strategy=\"netrc\", persist=True)\nds = xr.open_mfdataset(earthaccess.open(results))\ngeojson_path = '/home/jovyan/gulf.json'\ngdf = gpd.read_file(geojson_path) #Return a GeoDataFrame object\n\n\nharmony_client = Client()\nsst_short_name=\"MUR-JPL-L4-GLOB-v4.1\"\n\nrequest = Request(\n collection=Collection(id=sst_short_name),\n shape=geojson_path,\n temporal={\n 'start': dt.datetime(2020, 8, 1, 1),\n 'stop': dt.datetime(2020, 8, 1, 2) \n },\n)\njob_id = harmony_client.submit(request)\nharmony_client.wait_for_processing(job_id, show_progress=False)\ndata = harmony_client.result_json(job_id)\nresults = harmony_client.result_urls(job_id, link_type=LinkType.s3)\nurls = list(results)\nurl = urls[0]\n", + "history_output" : "Running", + "history_begin_time" : 1686694041713, + "history_end_time" : 1686694040929, + "history_notes" : null, + "history_process" : "cgvhiy", + "host_id" : "100001", + "indicator" : "Running" +}] diff --git a/history/ywrvvwo20iif52rga6.json b/history/ywrvvwo20iif52rga6.json new file mode 100644 index 0000000..ec935ae --- /dev/null +++ b/history/ywrvvwo20iif52rga6.json @@ -0,0 +1,21 @@ +[{ + "history_id" : "1no6k4c04fb", + "history_input" : "\n\n\n# Suppress warnings\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\n", + "history_begin_time" : 1686245892813, + "history_end_time" : 1686245901478, + "history_notes" : null, + "history_process" : "wttkvt", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "h4tv9h0v0no", + "history_input" : "from earth_data_utils import *\n\nssh_short_name = \"SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205\"\n\nresults = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-09-30\"),\n)", + "history_output" : "Running", + "history_begin_time" : 1686245903250, + "history_end_time" : 1686245902814, + "history_notes" : null, + "history_process" : "yvo1ds", + "host_id" : "100001", + "indicator" : "Running" +}]