From 3c6cf750aaa6b1b14b177f9e84b8c1d1e6724010 Mon Sep 17 00:00:00 2001 From: Gokul Prathin Date: Tue, 13 Jun 2023 06:08:36 -0400 Subject: [PATCH] added history files --- code/earth_access_authenticate.py | 2 +- code/process.json | 4 +- code/s3_file_storage.py | 44 +++++++++++------ history/3ZlO4QZpqjhGyKmyXO.json | 41 ++++++++++++++++ history/5dixki8g2scz0sjj56.json | 21 ++++++++ history/5ou0GVSM1NQnlv7FOB.json | 41 ++++++++++++++++ history/BacPAagztwKFogMSWa.json | 41 ++++++++++++++++ history/csltVkAvLqfza0jV0i.json | 41 ++++++++++++++++ history/gh2rmy5cq1bc003ak4.json | 21 ++++++++ history/kr2novmm4i9i27z5adyj.json | 80 +++++++++++++++++++++++++++++++ history/process_1b4ko0.json | 60 +++++++++++++++++++++++ history/process_cgvhiy.json | 60 +++++++++++++++++++++++ history/process_qmc7xi.json | 51 ++++++++++++++++++++ history/process_wttkvt.json | 60 +++++++++++++++++++++++ history/process_yvo1ds.json | 60 +++++++++++++++++++++++ history/u6EibxNEZg5Or4d4gZ.json | 41 ++++++++++++++++ history/xsUiKqCumWr86iaEFQ.json | 41 ++++++++++++++++ workflow.json | 4 +- 18 files changed, 694 insertions(+), 19 deletions(-) create mode 100644 history/3ZlO4QZpqjhGyKmyXO.json create mode 100644 history/5dixki8g2scz0sjj56.json create mode 100644 history/5ou0GVSM1NQnlv7FOB.json create mode 100644 history/BacPAagztwKFogMSWa.json create mode 100644 history/csltVkAvLqfza0jV0i.json create mode 100644 history/gh2rmy5cq1bc003ak4.json create mode 100644 history/process_qmc7xi.json create mode 100644 history/u6EibxNEZg5Or4d4gZ.json create mode 100644 history/xsUiKqCumWr86iaEFQ.json diff --git a/code/earth_access_authenticate.py b/code/earth_access_authenticate.py index 5f4506e..023fed5 100644 --- a/code/earth_access_authenticate.py +++ b/code/earth_access_authenticate.py @@ -26,7 +26,7 @@ }, ) job_id = harmony_client.submit(request) -harmony_client.wait_for_processing(job_id, show_progress=True) +harmony_client.wait_for_processing(job_id, show_progress=False) data = harmony_client.result_json(job_id) results = harmony_client.result_urls(job_id, link_type=LinkType.s3) urls = list(results) diff --git a/code/process.json b/code/process.json index fadbf67..8031ea6 100644 --- a/code/process.json +++ b/code/process.json @@ -18,7 +18,7 @@ "id" : "cgvhiy", "name" : "earth_access_authenticate", "description" : null, - "code" : "from search_data import *\n\nsst_short_name=\"MUR-JPL-L4-GLOB-v4.1\"\n\nresults = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-09-30\"),\n)\n\nauth = earthaccess.login(strategy=\"netrc\", persist=True)\nds = xr.open_mfdataset(earthaccess.open(results))\ngeojson_path = '/home/jovyan/gulf.json'\ngdf = gpd.read_file(geojson_path) #Return a GeoDataFrame object\n\n\nharmony_client = Client()\nsst_short_name=\"MUR-JPL-L4-GLOB-v4.1\"\n\nrequest = Request(\n collection=Collection(id=sst_short_name),\n shape=geojson_path,\n temporal={\n 'start': dt.datetime(2021, 8, 1, 1),\n 'stop': dt.datetime(2021, 8, 1, 2) \n },\n)\njob_id = harmony_client.submit(request)\nharmony_client.wait_for_processing(job_id, show_progress=True)\ndata = harmony_client.result_json(job_id)\nresults = harmony_client.result_urls(job_id, link_type=LinkType.s3)\nurls = list(results)\nurl = urls[0]\n", + "code" : "from search_data import *\n\nsst_short_name=\"MUR-JPL-L4-GLOB-v4.1\"\n\nresults = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-09-30\"),\n)\n\nauth = earthaccess.login(strategy=\"netrc\", persist=True)\nds = xr.open_mfdataset(earthaccess.open(results))\ngeojson_path = '/home/jovyan/gulf.json'\ngdf = gpd.read_file(geojson_path) #Return a GeoDataFrame object\n\n\nharmony_client = Client()\nsst_short_name=\"MUR-JPL-L4-GLOB-v4.1\"\n\nrequest = Request(\n collection=Collection(id=sst_short_name),\n shape=geojson_path,\n temporal={\n 'start': dt.datetime(2021, 8, 1, 1),\n 'stop': dt.datetime(2021, 8, 1, 2) \n },\n)\njob_id = harmony_client.submit(request)\nharmony_client.wait_for_processing(job_id, show_progress=False)\ndata = harmony_client.result_json(job_id)\nresults = harmony_client.result_urls(job_id, link_type=LinkType.s3)\nurls = list(results)\nurl = urls[0]\n", "lang" : "python", "owner" : "111111", "confidential" : "FALSE" @@ -26,7 +26,7 @@ "id" : "1b4ko0", "name" : "s3_file_storage", "description" : null, - "code" : "import matplotlib.pyplot as plt\nfrom earth_access_authenticate import *\n\ntry:\n creds = harmony_client.aws_credentials()\n s3_fs = s3fs.S3FileSystem(\n key=creds['aws_access_key_id'],\n secret=creds['aws_secret_access_key'],\n token=creds['aws_session_token'],\n client_kwargs={'region_name':'us-west-2'},\n )\n f = s3_fs.open(url, mode='rb')\n ds = xr.open_dataset(f)\n ds.analysed_sst.plot()\n plt.savefig('plot.png')\nexcept Exception as e:\n print('please check the write permissions to directory', e)", + "code" : "# Suppress warnings\nimport os\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs\nimport matplotlib.pyplot as plt\nfrom earth_access_authenticate import *\n\ncreds = harmony_client.aws_credentials()\ns3_fs = s3fs.S3FileSystem(\n key=creds['aws_access_key_id'],\n secret=creds['aws_secret_access_key'],\n token=creds['aws_session_token'],\n client_kwargs={'region_name':'us-west-2'},\n)\nf = s3_fs.open(url, mode='rb')\nds = xr.open_dataset(f)\nds.analysed_sst.plot()\nhome_dir = os.path.expanduser('~')\nplt.savefig(os.path.join(home_dir, 'plot2.png'))", "lang" : "python", "owner" : "111111", "confidential" : "FALSE" diff --git a/code/s3_file_storage.py b/code/s3_file_storage.py index 0eb40c3..b0c6aa9 100644 --- a/code/s3_file_storage.py +++ b/code/s3_file_storage.py @@ -1,17 +1,33 @@ +# Suppress warnings +import os +import warnings +warnings.simplefilter('ignore') +warnings.filterwarnings('ignore') + +# Direct access +import earthaccess +from pprint import pprint +import xarray as xr + +# Harmony +import geopandas as gpd +import geoviews as gv +gv.extension('bokeh', 'matplotlib') +from harmony import BBox, Client, Collection, Request, LinkType +import datetime as dt +import s3fs import matplotlib.pyplot as plt from earth_access_authenticate import * -try: - creds = harmony_client.aws_credentials() - s3_fs = s3fs.S3FileSystem( - key=creds['aws_access_key_id'], - secret=creds['aws_secret_access_key'], - token=creds['aws_session_token'], - client_kwargs={'region_name':'us-west-2'}, - ) - f = s3_fs.open(url, mode='rb') - ds = xr.open_dataset(f) - ds.analysed_sst.plot() - plt.savefig('plot.png') -except Exception as e: - print('please check the write permissions to directory', e) +creds = harmony_client.aws_credentials() +s3_fs = s3fs.S3FileSystem( + key=creds['aws_access_key_id'], + secret=creds['aws_secret_access_key'], + token=creds['aws_session_token'], + client_kwargs={'region_name':'us-west-2'}, +) +f = s3_fs.open(url, mode='rb') +ds = xr.open_dataset(f) +ds.analysed_sst.plot() +home_dir = os.path.expanduser('~') +plt.savefig(os.path.join(home_dir, 'plot2.png')) diff --git a/history/3ZlO4QZpqjhGyKmyXO.json b/history/3ZlO4QZpqjhGyKmyXO.json new file mode 100644 index 0000000..522b4e8 --- /dev/null +++ b/history/3ZlO4QZpqjhGyKmyXO.json @@ -0,0 +1,41 @@ +[{ + "history_id" : "qjzve8oimqm", + "history_input" : null, + "history_output" : "Authentication Failed. Wrong Password.", + "history_begin_time" : 1686629569918, + "history_end_time" : 1686629570051, + "history_notes" : null, + "history_process" : "wttkvt", + "host_id" : "100001", + "indicator" : "Failed" +},{ + "history_id" : "htpbdvjc8no", + "history_input" : null, + "history_output" : "Authentication Failed. Wrong Password.", + "history_begin_time" : 1686629570919, + "history_end_time" : 1686629570977, + "history_notes" : null, + "history_process" : "yvo1ds", + "host_id" : "100001", + "indicator" : "Failed" +},{ + "history_id" : "j2rg3ef6rul", + "history_input" : null, + "history_output" : "Authentication Failed. Wrong Password.", + "history_begin_time" : 1686629571059, + "history_end_time" : 1686629571096, + "history_notes" : null, + "history_process" : "cgvhiy", + "host_id" : "100001", + "indicator" : "Failed" +},{ + "history_id" : "zpwvlwn3rb8", + "history_input" : null, + "history_output" : "Authentication Failed. Wrong Password.", + "history_begin_time" : 1686629571983, + "history_end_time" : 1686629572047, + "history_notes" : null, + "history_process" : "1b4ko0", + "host_id" : "100001", + "indicator" : "Failed" +}] diff --git a/history/5dixki8g2scz0sjj56.json b/history/5dixki8g2scz0sjj56.json new file mode 100644 index 0000000..eff9bd4 --- /dev/null +++ b/history/5dixki8g2scz0sjj56.json @@ -0,0 +1,21 @@ +[{ + "history_id" : "y8vpu7ag2f3", + "history_input" : "# Write first python in Geoweaver\nx = 1", + "history_output" : "", + "history_begin_time" : 1686363724744, + "history_end_time" : 1686363725573, + "history_notes" : null, + "history_process" : "qmc7xi", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "xfgwx8dm9v7", + "history_input" : "# Write first python in Geoweaver\nx = 1", + "history_output" : "", + "history_begin_time" : 1686363726747, + "history_end_time" : 1686363727401, + "history_notes" : null, + "history_process" : "qmc7xi", + "host_id" : "100001", + "indicator" : "Done" +}] diff --git a/history/5ou0GVSM1NQnlv7FOB.json b/history/5ou0GVSM1NQnlv7FOB.json new file mode 100644 index 0000000..3a28c47 --- /dev/null +++ b/history/5ou0GVSM1NQnlv7FOB.json @@ -0,0 +1,41 @@ +[{ + "history_id" : "s5e7087vr1q", + "history_input" : "\n\n\n# Suppress warnings\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\n", + "history_begin_time" : 1686632672962, + "history_end_time" : 1686632681141, + "history_notes" : null, + "history_process" : "wttkvt", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "zqhu0tomq42", + "history_input" : "from earth_data_utils import *\n\nssh_short_name = \"SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205\"\n\nresults = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-09-30\"),\n)", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\n", + "history_begin_time" : 1686632682995, + "history_end_time" : 1686632692171, + "history_notes" : null, + "history_process" : "yvo1ds", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "1llchcspi3l", + "history_input" : "No code saved", + "history_output" : "Skipped", + "history_begin_time" : 1686632672823, + "history_end_time" : 1686632672823, + "history_notes" : null, + "history_process" : "cgvhiy", + "host_id" : "100001", + "indicator" : "Skipped" +},{ + "history_id" : "joj0lfoon7u", + "history_input" : "# Suppress warnings\nimport os\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs\nimport matplotlib.pyplot as plt\nfrom earth_access_authenticate import *\n\ncreds = harmony_client.aws_credentials()\ns3_fs = s3fs.S3FileSystem(\n key=creds['aws_access_key_id'],\n secret=creds['aws_secret_access_key'],\n token=creds['aws_session_token'],\n client_kwargs={'region_name':'us-west-2'},\n)\nf = s3_fs.open(url, mode='rb')\nds = xr.open_dataset(f)\nds.analysed_sst.plot()\nhome_dir = os.path.expanduser('~')\nplt.savefig(os.path.join(home_dir, 'plot2.png'))", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\nGranules found: 18\nYou're now authenticated with NASA Earthdata Login\nUsing token with expiration date: 08/07/2023\nUsing .netrc file for EDL\n Opening 18 granules, approx size: 0.0 GB\nSUBMITTING | : 0%| | 0/18 [00:00\nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\n", + "history_begin_time" : 1686632672898, + "history_end_time" : 1686632761172, + "history_notes" : null, + "history_process" : "1b4ko0", + "host_id" : "100001", + "indicator" : "Done" +}] diff --git a/history/BacPAagztwKFogMSWa.json b/history/BacPAagztwKFogMSWa.json new file mode 100644 index 0000000..5238b05 --- /dev/null +++ b/history/BacPAagztwKFogMSWa.json @@ -0,0 +1,41 @@ +[{ + "history_id" : "s7tk2j8ds8o", + "history_input" : "\n\n\n# Suppress warnings\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\n", + "history_begin_time" : 1686631604443, + "history_end_time" : 1686631842446, + "history_notes" : null, + "history_process" : "wttkvt", + "host_id" : "100001", + "indicator" : "Stopped" +},{ + "history_id" : "eyco001wisz", + "history_input" : "from earth_data_utils import *\n\nssh_short_name = \"SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205\"\n\nresults = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-09-30\"),\n)", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\n", + "history_begin_time" : 1686631614056, + "history_end_time" : 1686631842448, + "history_notes" : null, + "history_process" : "yvo1ds", + "host_id" : "100001", + "indicator" : "Stopped" +},{ + "history_id" : "6k5kastvud0", + "history_input" : "No code saved", + "history_output" : "Skipped", + "history_begin_time" : 1686631603556, + "history_end_time" : 1686631842449, + "history_notes" : null, + "history_process" : "cgvhiy", + "host_id" : "100001", + "indicator" : "Stopped" +},{ + "history_id" : "017zyblveve", + "history_input" : "import matplotlib.pyplot as plt\nfrom earth_access_authenticate import *\n\ntry:\n creds = harmony_client.aws_credentials()\n s3_fs = s3fs.S3FileSystem(\n key=creds['aws_access_key_id'],\n secret=creds['aws_secret_access_key'],\n token=creds['aws_session_token'],\n client_kwargs={'region_name':'us-west-2'},\n )\n f = s3_fs.open(url, mode='rb')\n ds = xr.open_dataset(f)\n ds.analysed_sst.plot()\n plt.savefig('plot.png')\nexcept Exception as e:\n print('please check the write permissions to directory', e)", + "history_output" : "Running", + "history_begin_time" : 1686631603591, + "history_end_time" : 1686631842470, + "history_notes" : null, + "history_process" : "1b4ko0", + "host_id" : "100001", + "indicator" : "Done" +}] diff --git a/history/csltVkAvLqfza0jV0i.json b/history/csltVkAvLqfza0jV0i.json new file mode 100644 index 0000000..3e7e914 --- /dev/null +++ b/history/csltVkAvLqfza0jV0i.json @@ -0,0 +1,41 @@ +[{ + "history_id" : "41l2aiz7t60", + "history_input" : "\n\n\n# Suppress warnings\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\n", + "history_begin_time" : 1686632544722, + "history_end_time" : 1686632577864, + "history_notes" : null, + "history_process" : "wttkvt", + "host_id" : "100001", + "indicator" : "Stopped" +},{ + "history_id" : "kfzm1gsm2q3", + "history_input" : "from earth_data_utils import *\n\nssh_short_name = \"SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205\"\n\nresults = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-09-30\"),\n)", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\n", + "history_begin_time" : 1686632554346, + "history_end_time" : 1686632577866, + "history_notes" : null, + "history_process" : "yvo1ds", + "host_id" : "100001", + "indicator" : "Stopped" +},{ + "history_id" : "qlori0y7gvu", + "history_input" : "No code saved", + "history_output" : "Skipped", + "history_begin_time" : 1686632543824, + "history_end_time" : 1686632577866, + "history_notes" : null, + "history_process" : "cgvhiy", + "host_id" : "100001", + "indicator" : "Stopped" +},{ + "history_id" : "5gv9vylxfc1", + "history_input" : "# Suppress warnings\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs\nimport matplotlib.pyplot as plt\nfrom earth_access_authenticate import *\n\ncreds = harmony_client.aws_credentials()\ns3_fs = s3fs.S3FileSystem(\n key=creds['aws_access_key_id'],\n secret=creds['aws_secret_access_key'],\n token=creds['aws_session_token'],\n client_kwargs={'region_name':'us-west-2'},\n)\nf = s3_fs.open(url, mode='rb')\nds = xr.open_dataset(f)\nds.analysed_sst.plot()\nplt.savefig('plot.png')", + "history_output" : "Running", + "history_begin_time" : 1686632544524, + "history_end_time" : 1686632577887, + "history_notes" : null, + "history_process" : "1b4ko0", + "host_id" : "100001", + "indicator" : "Done" +}] diff --git a/history/gh2rmy5cq1bc003ak4.json b/history/gh2rmy5cq1bc003ak4.json new file mode 100644 index 0000000..1b14c8b --- /dev/null +++ b/history/gh2rmy5cq1bc003ak4.json @@ -0,0 +1,21 @@ +[{ + "history_id" : "su0t44uyhx4", + "history_input" : "# Write first python in Geoweaver\nx = 1\n", + "history_output" : "", + "history_begin_time" : 1686364629718, + "history_end_time" : 1686364630456, + "history_notes" : null, + "history_process" : "qmc7xi", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "acdfrkt8tq5", + "history_input" : "# Write first python in Geoweaver\nx = 1\n", + "history_output" : "", + "history_begin_time" : 1686364630719, + "history_end_time" : 1686364631295, + "history_notes" : null, + "history_process" : "qmc7xi", + "host_id" : "100001", + "indicator" : "Done" +}] diff --git a/history/kr2novmm4i9i27z5adyj.json b/history/kr2novmm4i9i27z5adyj.json index 281b7b6..65df9d5 100644 --- a/history/kr2novmm4i9i27z5adyj.json +++ b/history/kr2novmm4i9i27z5adyj.json @@ -1,4 +1,84 @@ [{ + "history_id" : "xsUiKqCumWr86iaEFQ", + "history_input" : "wttkvt-GJjq8;yvo1ds-96vns;cgvhiy-BgnXM;1b4ko0-4k9iL;", + "history_output" : "yvx83lhph1j;h4fh5a8ni2n;0o6dx0px27x;6dlcc5ae923;", + "history_begin_time" : 1686633177861, + "history_end_time" : 1686633273381, + "history_notes" : null, + "history_process" : "kr2novmm4i9i27z5adyj", + "host_id" : "100001;", + "indicator" : "Done" +},{ + "history_id" : "5ou0GVSM1NQnlv7FOB", + "history_input" : "wttkvt-GJjq8;yvo1ds-96vns;cgvhiy-BgnXM;1b4ko0-4k9iL;", + "history_output" : "s5e7087vr1q;zqhu0tomq42;1llchcspi3l;joj0lfoon7u;", + "history_begin_time" : 1686632672814, + "history_end_time" : 1686632672898, + "history_notes" : null, + "history_process" : "kr2novmm4i9i27z5adyj", + "host_id" : "100001;", + "indicator" : "Done" +},{ + "history_id" : "csltVkAvLqfza0jV0i", + "history_input" : "wttkvt-GJjq8;yvo1ds-96vns;cgvhiy-BgnXM;1b4ko0-4k9iL;", + "history_output" : "41l2aiz7t60;kfzm1gsm2q3;qlori0y7gvu;5gv9vylxfc1;", + "history_begin_time" : 1686632543814, + "history_end_time" : 1686632544524, + "history_notes" : null, + "history_process" : "kr2novmm4i9i27z5adyj", + "host_id" : "100001;", + "indicator" : "Done" +},{ + "history_id" : "BacPAagztwKFogMSWa", + "history_input" : "wttkvt-GJjq8;yvo1ds-96vns;cgvhiy-BgnXM;1b4ko0-4k9iL;", + "history_output" : "s7tk2j8ds8o;eyco001wisz;6k5kastvud0;017zyblveve;", + "history_begin_time" : 1686631603517, + "history_end_time" : 1686631603591, + "history_notes" : null, + "history_process" : "kr2novmm4i9i27z5adyj", + "host_id" : "100001;", + "indicator" : "Done" +},{ + "history_id" : "u6EibxNEZg5Or4d4gZ", + "history_input" : "wttkvt-GJjq8;yvo1ds-96vns;cgvhiy-BgnXM;1b4ko0-4k9iL;", + "history_output" : "6n080fci3ip;ijf85fbchyu;4vcjckvbwqe;q5lfxjata7f;", + "history_begin_time" : 1686629600415, + "history_end_time" : 1686630059047, + "history_notes" : null, + "history_process" : "kr2novmm4i9i27z5adyj", + "host_id" : "100001;", + "indicator" : "Stopped" +},{ + "history_id" : "3ZlO4QZpqjhGyKmyXO", + "history_input" : "wttkvt-GJjq8;yvo1ds-96vns;cgvhiy-BgnXM;1b4ko0-4k9iL;", + "history_output" : "qjzve8oimqm;htpbdvjc8no;j2rg3ef6rul;zpwvlwn3rb8;", + "history_begin_time" : 1686629569725, + "history_end_time" : 1686629571983, + "history_notes" : null, + "history_process" : "kr2novmm4i9i27z5adyj", + "host_id" : "100001;", + "indicator" : "Failed" +},{ + "history_id" : "gh2rmy5cq1bc003ak4", + "history_input" : "qmc7xi-PKVJE;qmc7xi-j8tMU;", + "history_output" : "su0t44uyhx4;acdfrkt8tq5;", + "history_begin_time" : 1686364628732, + "history_end_time" : 1686364630719, + "history_notes" : null, + "history_process" : "kr2novmm4i9i27z5adyj", + "host_id" : "100001;", + "indicator" : "Done" +},{ + "history_id" : "5dixki8g2scz0sjj56", + "history_input" : "qmc7xi-PKVJE;qmc7xi-j8tMU;", + "history_output" : "y8vpu7ag2f3;xfgwx8dm9v7;", + "history_begin_time" : 1686363723760, + "history_end_time" : 1686363726747, + "history_notes" : null, + "history_process" : "kr2novmm4i9i27z5adyj", + "host_id" : "100001;", + "indicator" : "Done" +},{ "history_id" : "mx1w8k46bha4zi0q8r", "history_input" : "wttkvt-GJjq8;yvo1ds-96vns;cgvhiy-BgnXM;v2ow93-Hzgrq;1b4ko0-4k9iL;", "history_output" : "up3kzptbd6u;33tkamqsogz;1d8qw3nj2gh;o9rugig6e7k;mvmf00065id;", diff --git a/history/process_1b4ko0.json b/history/process_1b4ko0.json index c0e90ca..5885a90 100644 --- a/history/process_1b4ko0.json +++ b/history/process_1b4ko0.json @@ -1,4 +1,64 @@ [{ + "history_id" : "6dlcc5ae923", + "history_input" : "# Suppress warnings\nimport os\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs\nimport matplotlib.pyplot as plt\nfrom earth_access_authenticate import *\n\ncreds = harmony_client.aws_credentials()\ns3_fs = s3fs.S3FileSystem(\n key=creds['aws_access_key_id'],\n secret=creds['aws_secret_access_key'],\n token=creds['aws_session_token'],\n client_kwargs={'region_name':'us-west-2'},\n)\nf = s3_fs.open(url, mode='rb')\nds = xr.open_dataset(f)\nds.analysed_sst.plot()\nhome_dir = os.path.expanduser('~')\nplt.savefig(os.path.join(home_dir, 'plot2.png'))", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\nGranules found: 18\nYou're now authenticated with NASA Earthdata Login\nUsing token with expiration date: 08/07/2023\nUsing .netrc file for EDL\n Opening 18 granules, approx size: 0.0 GB\nSUBMITTING | : 0%| | 0/18 [00:00\nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\n", + "history_begin_time" : 1686633273381, + "history_end_time" : 1686633337538, + "history_notes" : null, + "history_process" : "1b4ko0", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "joj0lfoon7u", + "history_input" : "# Suppress warnings\nimport os\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs\nimport matplotlib.pyplot as plt\nfrom earth_access_authenticate import *\n\ncreds = harmony_client.aws_credentials()\ns3_fs = s3fs.S3FileSystem(\n key=creds['aws_access_key_id'],\n secret=creds['aws_secret_access_key'],\n token=creds['aws_session_token'],\n client_kwargs={'region_name':'us-west-2'},\n)\nf = s3_fs.open(url, mode='rb')\nds = xr.open_dataset(f)\nds.analysed_sst.plot()\nhome_dir = os.path.expanduser('~')\nplt.savefig(os.path.join(home_dir, 'plot2.png'))", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\nGranules found: 18\nYou're now authenticated with NASA Earthdata Login\nUsing token with expiration date: 08/07/2023\nUsing .netrc file for EDL\n Opening 18 granules, approx size: 0.0 GB\nSUBMITTING | : 0%| | 0/18 [00:00\nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\n", + "history_begin_time" : 1686632672898, + "history_end_time" : 1686632761172, + "history_notes" : null, + "history_process" : "1b4ko0", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "5gv9vylxfc1", + "history_input" : "# Suppress warnings\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs\nimport matplotlib.pyplot as plt\nfrom earth_access_authenticate import *\n\ncreds = harmony_client.aws_credentials()\ns3_fs = s3fs.S3FileSystem(\n key=creds['aws_access_key_id'],\n secret=creds['aws_secret_access_key'],\n token=creds['aws_session_token'],\n client_kwargs={'region_name':'us-west-2'},\n)\nf = s3_fs.open(url, mode='rb')\nds = xr.open_dataset(f)\nds.analysed_sst.plot()\nplt.savefig('plot.png')", + "history_output" : "Running", + "history_begin_time" : 1686632544524, + "history_end_time" : 1686632577887, + "history_notes" : null, + "history_process" : "1b4ko0", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "017zyblveve", + "history_input" : "import matplotlib.pyplot as plt\nfrom earth_access_authenticate import *\n\ntry:\n creds = harmony_client.aws_credentials()\n s3_fs = s3fs.S3FileSystem(\n key=creds['aws_access_key_id'],\n secret=creds['aws_secret_access_key'],\n token=creds['aws_session_token'],\n client_kwargs={'region_name':'us-west-2'},\n )\n f = s3_fs.open(url, mode='rb')\n ds = xr.open_dataset(f)\n ds.analysed_sst.plot()\n plt.savefig('plot.png')\nexcept Exception as e:\n print('please check the write permissions to directory', e)", + "history_output" : "Running", + "history_begin_time" : 1686631603591, + "history_end_time" : 1686631842470, + "history_notes" : null, + "history_process" : "1b4ko0", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "q5lfxjata7f", + "history_input" : "import matplotlib.pyplot as plt\nfrom earth_access_authenticate import *\n\ntry:\n creds = harmony_client.aws_credentials()\n s3_fs = s3fs.S3FileSystem(\n key=creds['aws_access_key_id'],\n secret=creds['aws_secret_access_key'],\n token=creds['aws_session_token'],\n client_kwargs={'region_name':'us-west-2'},\n )\n f = s3_fs.open(url, mode='rb')\n ds = xr.open_dataset(f)\n ds.analysed_sst.plot()\n plt.savefig('plot.png')\nexcept Exception as e:\n print('please check the write permissions to directory', e)", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\nGranules found: 18\nYou're now authenticated with NASA Earthdata Login\nUsing token with expiration date: 08/07/2023\nUsing .netrc file for EDL\n Opening 18 granules, approx size: 0.0 GB\nSUBMITTING | : 0%| | 0/18 [00:00\nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\n", + "history_begin_time" : 1686630059047, + "history_end_time" : 1686631556059, + "history_notes" : null, + "history_process" : "1b4ko0", + "host_id" : "100001", + "indicator" : "Stopped" +},{ + "history_id" : "zpwvlwn3rb8", + "history_input" : null, + "history_output" : "Authentication Failed. Wrong Password.", + "history_begin_time" : 1686629571983, + "history_end_time" : 1686629572047, + "history_notes" : null, + "history_process" : "1b4ko0", + "host_id" : "100001", + "indicator" : "Failed" +},{ "history_id" : "mvmf00065id", "history_input" : "from connect_harmony_client import *\n\ntry:\n creds = harmony_client.aws_credentials()\n s3_fs = s3fs.S3FileSystem(\n key=creds['aws_access_key_id'],\n secret=creds['aws_secret_access_key'],\n token=creds['aws_session_token'],\n client_kwargs={'region_name':'us-west-2'},\n )\n f = s3_fs.open(url, mode='rb')\n ds = xr.open_dataset(f)\n#ds.analysed_sst.plot()\nexcept:\n pass", "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\nYou're now authenticated with NASA Earthdata Login\nUsing token with expiration date: 08/07/2023\nUsing .netrc file for EDL\n Opening 18 granules, approx size: 0.0 GB\nSUBMITTING | : 0%| | 0/18 [00:00\nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\n", diff --git a/history/process_cgvhiy.json b/history/process_cgvhiy.json index e2ca6ba..c5b8c7d 100644 --- a/history/process_cgvhiy.json +++ b/history/process_cgvhiy.json @@ -1,4 +1,64 @@ [{ + "history_id" : "0o6dx0px27x", + "history_input" : "from search_data import *\n\nsst_short_name=\"MUR-JPL-L4-GLOB-v4.1\"\n\nresults = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-09-30\"),\n)\n\nauth = earthaccess.login(strategy=\"netrc\", persist=True)\nds = xr.open_mfdataset(earthaccess.open(results))\ngeojson_path = '/home/jovyan/gulf.json'\ngdf = gpd.read_file(geojson_path) #Return a GeoDataFrame object\n\n\nharmony_client = Client()\nsst_short_name=\"MUR-JPL-L4-GLOB-v4.1\"\n\nrequest = Request(\n collection=Collection(id=sst_short_name),\n shape=geojson_path,\n temporal={\n 'start': dt.datetime(2021, 8, 1, 1),\n 'stop': dt.datetime(2021, 8, 1, 2) \n },\n)\njob_id = harmony_client.submit(request)\nharmony_client.wait_for_processing(job_id, show_progress=False)\ndata = harmony_client.result_json(job_id)\nresults = harmony_client.result_urls(job_id, link_type=LinkType.s3)\nurls = list(results)\nurl = urls[0]\n", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\nGranules found: 18\nYou're now authenticated with NASA Earthdata Login\nUsing token with expiration date: 08/07/2023\nUsing .netrc file for EDL\n Opening 18 granules, approx size: 0.0 GB\nSUBMITTING | : 0%| | 0/18 [00:00\nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\n", + "history_begin_time" : 1686633198385, + "history_end_time" : 1686633271714, + "history_notes" : null, + "history_process" : "cgvhiy", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "1llchcspi3l", + "history_input" : "No code saved", + "history_output" : "Skipped", + "history_begin_time" : 1686632672823, + "history_end_time" : 1686632672823, + "history_notes" : null, + "history_process" : "cgvhiy", + "host_id" : "100001", + "indicator" : "Skipped" +},{ + "history_id" : "qlori0y7gvu", + "history_input" : "No code saved", + "history_output" : "Skipped", + "history_begin_time" : 1686632543824, + "history_end_time" : 1686632577866, + "history_notes" : null, + "history_process" : "cgvhiy", + "host_id" : "100001", + "indicator" : "Stopped" +},{ + "history_id" : "6k5kastvud0", + "history_input" : "No code saved", + "history_output" : "Skipped", + "history_begin_time" : 1686631603556, + "history_end_time" : 1686631842449, + "history_notes" : null, + "history_process" : "cgvhiy", + "host_id" : "100001", + "indicator" : "Stopped" +},{ + "history_id" : "4vcjckvbwqe", + "history_input" : "from search_data import *\n\nsst_short_name=\"MUR-JPL-L4-GLOB-v4.1\"\n\nresults = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-09-30\"),\n)\n\nauth = earthaccess.login(strategy=\"netrc\", persist=True)\nds = xr.open_mfdataset(earthaccess.open(results))\ngeojson_path = '/home/jovyan/gulf.json'\ngdf = gpd.read_file(geojson_path) #Return a GeoDataFrame object\n\n\nharmony_client = Client()\nsst_short_name=\"MUR-JPL-L4-GLOB-v4.1\"\n\nrequest = Request(\n collection=Collection(id=sst_short_name),\n shape=geojson_path,\n temporal={\n 'start': dt.datetime(2021, 8, 1, 1),\n 'stop': dt.datetime(2021, 8, 1, 2) \n },\n)\njob_id = harmony_client.submit(request)\nharmony_client.wait_for_processing(job_id, show_progress=True)\ndata = harmony_client.result_json(job_id)\nresults = harmony_client.result_urls(job_id, link_type=LinkType.s3)\nurls = list(results)\nurl = urls[0]\n", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\nGranules found: 18\nYou're now authenticated with NASA Earthdata Login\nUsing token with expiration date: 08/07/2023\nUsing .netrc file for EDL\n Opening 18 granules, approx size: 0.0 GB\nSUBMITTING | : 0%| | 0/18 [00:00\nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\n", + "history_begin_time" : 1686629621710, + "history_end_time" : 1686631556058, + "history_notes" : null, + "history_process" : "cgvhiy", + "host_id" : "100001", + "indicator" : "Stopped" +},{ + "history_id" : "j2rg3ef6rul", + "history_input" : null, + "history_output" : "Authentication Failed. Wrong Password.", + "history_begin_time" : 1686629571059, + "history_end_time" : 1686629571096, + "history_notes" : null, + "history_process" : "cgvhiy", + "host_id" : "100001", + "indicator" : "Failed" +},{ "history_id" : "RkG6Uff65QLK", "history_input" : "from search_data import *\n\nsst_short_name=\"MUR-JPL-L4-GLOB-v4.1\"\n\nresults = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-09-30\"),\n)\n\nauth = earthaccess.login(strategy=\"netrc\", persist=True)\nds = xr.open_mfdataset(earthaccess.open(results))\ngeojson_path = '/home/jovyan/gulf.json'\ngdf = gpd.read_file(geojson_path) #Return a GeoDataFrame object\n\n\nharmony_client = Client()\nsst_short_name=\"MUR-JPL-L4-GLOB-v4.1\"\n\nrequest = Request(\n collection=Collection(id=sst_short_name),\n shape=geojson_path,\n temporal={\n 'start': dt.datetime(2021, 8, 1, 1),\n 'stop': dt.datetime(2021, 8, 1, 2) \n },\n)\njob_id = harmony_client.submit(request)\nharmony_client.wait_for_processing(job_id, show_progress=True)\ndata = harmony_client.result_json(job_id)\nresults = harmony_client.result_urls(job_id, link_type=LinkType.s3)\nurls = list(results)\nurl = urls[0]\n", "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\nGranules found: 18\nYou're now authenticated with NASA Earthdata Login\nUsing token with expiration date: 08/07/2023\nUsing .netrc file for EDL\n Opening 18 granules, approx size: 0.0 GB\nSUBMITTING | : 0%| | 0/18 [00:00\nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\n", diff --git a/history/process_qmc7xi.json b/history/process_qmc7xi.json new file mode 100644 index 0000000..c92f9ff --- /dev/null +++ b/history/process_qmc7xi.json @@ -0,0 +1,51 @@ +[{ + "history_id" : "acdfrkt8tq5", + "history_input" : "# Write first python in Geoweaver\nx = 1\n", + "history_output" : "", + "history_begin_time" : 1686364630719, + "history_end_time" : 1686364631295, + "history_notes" : null, + "history_process" : "qmc7xi", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "su0t44uyhx4", + "history_input" : "# Write first python in Geoweaver\nx = 1\n", + "history_output" : "", + "history_begin_time" : 1686364629718, + "history_end_time" : 1686364630456, + "history_notes" : null, + "history_process" : "qmc7xi", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "f5h520hnczlqi99tod", + "history_input" : "# Write first python in Geoweaver\nx = 1\n", + "history_output" : "", + "history_begin_time" : 1686364247911, + "history_end_time" : 1686364248040, + "history_notes" : null, + "history_process" : "qmc7xi", + "host_id" : null, + "indicator" : "Done" +},{ + "history_id" : "xfgwx8dm9v7", + "history_input" : "# Write first python in Geoweaver\nx = 1", + "history_output" : "", + "history_begin_time" : 1686363726747, + "history_end_time" : 1686363727401, + "history_notes" : null, + "history_process" : "qmc7xi", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "y8vpu7ag2f3", + "history_input" : "# Write first python in Geoweaver\nx = 1", + "history_output" : "", + "history_begin_time" : 1686363724744, + "history_end_time" : 1686363725573, + "history_notes" : null, + "history_process" : "qmc7xi", + "host_id" : "100001", + "indicator" : "Done" +},] diff --git a/history/process_wttkvt.json b/history/process_wttkvt.json index 1dfd786..308cac8 100644 --- a/history/process_wttkvt.json +++ b/history/process_wttkvt.json @@ -1,4 +1,64 @@ [{ + "history_id" : "yvx83lhph1j", + "history_input" : "\n\n\n# Suppress warnings\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\n", + "history_begin_time" : 1686633178181, + "history_end_time" : 1686633186380, + "history_notes" : null, + "history_process" : "wttkvt", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "s5e7087vr1q", + "history_input" : "\n\n\n# Suppress warnings\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\n", + "history_begin_time" : 1686632672962, + "history_end_time" : 1686632681141, + "history_notes" : null, + "history_process" : "wttkvt", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "41l2aiz7t60", + "history_input" : "\n\n\n# Suppress warnings\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\n", + "history_begin_time" : 1686632544722, + "history_end_time" : 1686632577864, + "history_notes" : null, + "history_process" : "wttkvt", + "host_id" : "100001", + "indicator" : "Stopped" +},{ + "history_id" : "s7tk2j8ds8o", + "history_input" : "\n\n\n# Suppress warnings\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\n", + "history_begin_time" : 1686631604443, + "history_end_time" : 1686631842446, + "history_notes" : null, + "history_process" : "wttkvt", + "host_id" : "100001", + "indicator" : "Stopped" +},{ + "history_id" : "6n080fci3ip", + "history_input" : "\n\n\n# Suppress warnings\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\n", + "history_begin_time" : 1686629601104, + "history_end_time" : 1686631556054, + "history_notes" : null, + "history_process" : "wttkvt", + "host_id" : "100001", + "indicator" : "Stopped" +},{ + "history_id" : "qjzve8oimqm", + "history_input" : null, + "history_output" : "Authentication Failed. Wrong Password.", + "history_begin_time" : 1686629569918, + "history_end_time" : 1686629570051, + "history_notes" : null, + "history_process" : "wttkvt", + "host_id" : "100001", + "indicator" : "Failed" +},{ "history_id" : "up3kzptbd6u", "history_input" : "\n\n\n# Suppress warnings\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs", "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\n", diff --git a/history/process_yvo1ds.json b/history/process_yvo1ds.json index ca30e13..dd0ccd7 100644 --- a/history/process_yvo1ds.json +++ b/history/process_yvo1ds.json @@ -1,4 +1,64 @@ [{ + "history_id" : "h4fh5a8ni2n", + "history_input" : "from earth_data_utils import *\n\nssh_short_name = \"SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205\"\n\nresults = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-09-30\"),\n)", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\n", + "history_begin_time" : 1686633188207, + "history_end_time" : 1686633197371, + "history_notes" : null, + "history_process" : "yvo1ds", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "zqhu0tomq42", + "history_input" : "from earth_data_utils import *\n\nssh_short_name = \"SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205\"\n\nresults = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-09-30\"),\n)", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\n", + "history_begin_time" : 1686632682995, + "history_end_time" : 1686632692171, + "history_notes" : null, + "history_process" : "yvo1ds", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "kfzm1gsm2q3", + "history_input" : "from earth_data_utils import *\n\nssh_short_name = \"SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205\"\n\nresults = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-09-30\"),\n)", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\n", + "history_begin_time" : 1686632554346, + "history_end_time" : 1686632577866, + "history_notes" : null, + "history_process" : "yvo1ds", + "host_id" : "100001", + "indicator" : "Stopped" +},{ + "history_id" : "eyco001wisz", + "history_input" : "from earth_data_utils import *\n\nssh_short_name = \"SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205\"\n\nresults = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-09-30\"),\n)", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\n", + "history_begin_time" : 1686631614056, + "history_end_time" : 1686631842448, + "history_notes" : null, + "history_process" : "yvo1ds", + "host_id" : "100001", + "indicator" : "Stopped" +},{ + "history_id" : "ijf85fbchyu", + "history_input" : "from earth_data_utils import *\n\nssh_short_name = \"SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205\"\n\nresults = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-09-30\"),\n)", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\n", + "history_begin_time" : 1686629611056, + "history_end_time" : 1686631556056, + "history_notes" : null, + "history_process" : "yvo1ds", + "host_id" : "100001", + "indicator" : "Stopped" +},{ + "history_id" : "htpbdvjc8no", + "history_input" : null, + "history_output" : "Authentication Failed. Wrong Password.", + "history_begin_time" : 1686629570919, + "history_end_time" : 1686629570977, + "history_notes" : null, + "history_process" : "yvo1ds", + "host_id" : "100001", + "indicator" : "Failed" +},{ "history_id" : "33tkamqsogz", "history_input" : "from earth_data_utils import *\n\nssh_short_name = \"SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205\"\n\nresults = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-09-30\"),\n)", "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\n", diff --git a/history/u6EibxNEZg5Or4d4gZ.json b/history/u6EibxNEZg5Or4d4gZ.json new file mode 100644 index 0000000..55ed752 --- /dev/null +++ b/history/u6EibxNEZg5Or4d4gZ.json @@ -0,0 +1,41 @@ +[{ + "history_id" : "6n080fci3ip", + "history_input" : "\n\n\n# Suppress warnings\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\n", + "history_begin_time" : 1686629601104, + "history_end_time" : 1686631556054, + "history_notes" : null, + "history_process" : "wttkvt", + "host_id" : "100001", + "indicator" : "Stopped" +},{ + "history_id" : "ijf85fbchyu", + "history_input" : "from earth_data_utils import *\n\nssh_short_name = \"SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205\"\n\nresults = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-09-30\"),\n)", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\n", + "history_begin_time" : 1686629611056, + "history_end_time" : 1686631556056, + "history_notes" : null, + "history_process" : "yvo1ds", + "host_id" : "100001", + "indicator" : "Stopped" +},{ + "history_id" : "4vcjckvbwqe", + "history_input" : "from search_data import *\n\nsst_short_name=\"MUR-JPL-L4-GLOB-v4.1\"\n\nresults = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-09-30\"),\n)\n\nauth = earthaccess.login(strategy=\"netrc\", persist=True)\nds = xr.open_mfdataset(earthaccess.open(results))\ngeojson_path = '/home/jovyan/gulf.json'\ngdf = gpd.read_file(geojson_path) #Return a GeoDataFrame object\n\n\nharmony_client = Client()\nsst_short_name=\"MUR-JPL-L4-GLOB-v4.1\"\n\nrequest = Request(\n collection=Collection(id=sst_short_name),\n shape=geojson_path,\n temporal={\n 'start': dt.datetime(2021, 8, 1, 1),\n 'stop': dt.datetime(2021, 8, 1, 2) \n },\n)\njob_id = harmony_client.submit(request)\nharmony_client.wait_for_processing(job_id, show_progress=True)\ndata = harmony_client.result_json(job_id)\nresults = harmony_client.result_urls(job_id, link_type=LinkType.s3)\nurls = list(results)\nurl = urls[0]\n", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\nGranules found: 18\nYou're now authenticated with NASA Earthdata Login\nUsing token with expiration date: 08/07/2023\nUsing .netrc file for EDL\n Opening 18 granules, approx size: 0.0 GB\nSUBMITTING | : 0%| | 0/18 [00:00\nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\n", + "history_begin_time" : 1686629621710, + "history_end_time" : 1686631556058, + "history_notes" : null, + "history_process" : "cgvhiy", + "host_id" : "100001", + "indicator" : "Stopped" +},{ + "history_id" : "q5lfxjata7f", + "history_input" : "import matplotlib.pyplot as plt\nfrom earth_access_authenticate import *\n\ntry:\n creds = harmony_client.aws_credentials()\n s3_fs = s3fs.S3FileSystem(\n key=creds['aws_access_key_id'],\n secret=creds['aws_secret_access_key'],\n token=creds['aws_session_token'],\n client_kwargs={'region_name':'us-west-2'},\n )\n f = s3_fs.open(url, mode='rb')\n ds = xr.open_dataset(f)\n ds.analysed_sst.plot()\n plt.savefig('plot.png')\nexcept Exception as e:\n print('please check the write permissions to directory', e)", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\nGranules found: 18\nYou're now authenticated with NASA Earthdata Login\nUsing token with expiration date: 08/07/2023\nUsing .netrc file for EDL\n Opening 18 granules, approx size: 0.0 GB\nSUBMITTING | : 0%| | 0/18 [00:00\nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\n", + "history_begin_time" : 1686630059047, + "history_end_time" : 1686631556059, + "history_notes" : null, + "history_process" : "1b4ko0", + "host_id" : "100001", + "indicator" : "Stopped" +}] diff --git a/history/xsUiKqCumWr86iaEFQ.json b/history/xsUiKqCumWr86iaEFQ.json new file mode 100644 index 0000000..e5020d6 --- /dev/null +++ b/history/xsUiKqCumWr86iaEFQ.json @@ -0,0 +1,41 @@ +[{ + "history_id" : "yvx83lhph1j", + "history_input" : "\n\n\n# Suppress warnings\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\n", + "history_begin_time" : 1686633178181, + "history_end_time" : 1686633186380, + "history_notes" : null, + "history_process" : "wttkvt", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "h4fh5a8ni2n", + "history_input" : "from earth_data_utils import *\n\nssh_short_name = \"SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205\"\n\nresults = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-09-30\"),\n)", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\n", + "history_begin_time" : 1686633188207, + "history_end_time" : 1686633197371, + "history_notes" : null, + "history_process" : "yvo1ds", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "0o6dx0px27x", + "history_input" : "from search_data import *\n\nsst_short_name=\"MUR-JPL-L4-GLOB-v4.1\"\n\nresults = earthaccess.search_data(\n short_name=ssh_short_name,\n cloud_hosted=True,\n temporal=(\"2021-07-01\", \"2021-09-30\"),\n)\n\nauth = earthaccess.login(strategy=\"netrc\", persist=True)\nds = xr.open_mfdataset(earthaccess.open(results))\ngeojson_path = '/home/jovyan/gulf.json'\ngdf = gpd.read_file(geojson_path) #Return a GeoDataFrame object\n\n\nharmony_client = Client()\nsst_short_name=\"MUR-JPL-L4-GLOB-v4.1\"\n\nrequest = Request(\n collection=Collection(id=sst_short_name),\n shape=geojson_path,\n temporal={\n 'start': dt.datetime(2021, 8, 1, 1),\n 'stop': dt.datetime(2021, 8, 1, 2) \n },\n)\njob_id = harmony_client.submit(request)\nharmony_client.wait_for_processing(job_id, show_progress=False)\ndata = harmony_client.result_json(job_id)\nresults = harmony_client.result_urls(job_id, link_type=LinkType.s3)\nurls = list(results)\nurl = urls[0]\n", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\nGranules found: 18\nYou're now authenticated with NASA Earthdata Login\nUsing token with expiration date: 08/07/2023\nUsing .netrc file for EDL\n Opening 18 granules, approx size: 0.0 GB\nSUBMITTING | : 0%| | 0/18 [00:00\nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\n", + "history_begin_time" : 1686633198385, + "history_end_time" : 1686633271714, + "history_notes" : null, + "history_process" : "cgvhiy", + "host_id" : "100001", + "indicator" : "Done" +},{ + "history_id" : "6dlcc5ae923", + "history_input" : "# Suppress warnings\nimport os\nimport warnings\nwarnings.simplefilter('ignore')\nwarnings.filterwarnings('ignore')\n\n# Direct access\nimport earthaccess \nfrom pprint import pprint\nimport xarray as xr\n\n# Harmony\nimport geopandas as gpd\nimport geoviews as gv\ngv.extension('bokeh', 'matplotlib')\nfrom harmony import BBox, Client, Collection, Request, LinkType\nimport datetime as dt\nimport s3fs\nimport matplotlib.pyplot as plt\nfrom earth_access_authenticate import *\n\ncreds = harmony_client.aws_credentials()\ns3_fs = s3fs.S3FileSystem(\n key=creds['aws_access_key_id'],\n secret=creds['aws_secret_access_key'],\n token=creds['aws_session_token'],\n client_kwargs={'region_name':'us-west-2'},\n)\nf = s3_fs.open(url, mode='rb')\nds = xr.open_dataset(f)\nds.analysed_sst.plot()\nhome_dir = os.path.expanduser('~')\nplt.savefig(os.path.join(home_dir, 'plot2.png'))", + "history_output" : "/srv/conda/envs/notebook/lib/python3.9/site-packages/geoviews/operation/__init__.py:14: HoloviewsDeprecationWarning: 'ResamplingOperation' is deprecated and will be removed in version 1.17, use 'ResampleOperation2D' instead.\n from holoviews.operation.datashader import (\nGranules found: 18\nGranules found: 18\nYou're now authenticated with NASA Earthdata Login\nUsing token with expiration date: 08/07/2023\nUsing .netrc file for EDL\n Opening 18 granules, approx size: 0.0 GB\nSUBMITTING | : 0%| | 0/18 [00:00\nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 249, in __del__\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/xarray/backends/file_manager.py\", line 233, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\nException ignored in: \nTraceback (most recent call last):\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5netcdf/core.py\", line 1209, in close\n File \"/srv/conda/envs/notebook/lib/python3.9/site-packages/h5py/_hl/files.py\", line 585, in close\nTypeError: bad operand type for unary ~: 'NoneType'\n", + "history_begin_time" : 1686633273381, + "history_end_time" : 1686633337538, + "history_notes" : null, + "history_process" : "1b4ko0", + "host_id" : "100001", + "indicator" : "Done" +}] diff --git a/workflow.json b/workflow.json index 73b5ef7..8ee55e8 100644 --- a/workflow.json +++ b/workflow.json @@ -4,6 +4,6 @@ "description" : "", "owner" : "111111", "confidential" : "FALSE", - "edges" : "[{\"source\":{\"title\":\"earth_data_utils\",\"id\":\"wttkvt-GJjq8\",\"x\":524.66552734375,\"y\":562,\"color\":\"white\"},\"target\":{\"title\":\"search_data\",\"id\":\"yvo1ds-96vns\",\"x\":751,\"y\":559,\"color\":\"white\"}},{\"source\":{\"title\":\"search_data\",\"id\":\"yvo1ds-96vns\",\"x\":751,\"y\":559,\"color\":\"white\"},\"target\":{\"title\":\"earth_access_authenticate\",\"id\":\"cgvhiy-BgnXM\",\"x\":997,\"y\":558,\"color\":\"white\"}},{\"source\":{\"title\":\"earth_access_authenticate\",\"id\":\"cgvhiy-BgnXM\",\"x\":997,\"y\":558,\"color\":\"white\"},\"target\":{\"title\":\"s3_file_storage\",\"id\":\"1b4ko0-4k9iL\",\"x\":1004,\"y\":694,\"color\":\"white\"}}]", - "nodes" : "[{\"title\":\"earth_data_utils\",\"id\":\"wttkvt-GJjq8\",\"x\":524.66552734375,\"y\":562,\"color\":\"white\"},{\"title\":\"search_data\",\"id\":\"yvo1ds-96vns\",\"x\":751,\"y\":559,\"color\":\"white\"},{\"title\":\"earth_access_authenticate\",\"id\":\"cgvhiy-BgnXM\",\"x\":997,\"y\":558,\"color\":\"white\"},{\"title\":\"s3_file_storage\",\"id\":\"1b4ko0-4k9iL\",\"x\":1004,\"y\":694,\"color\":\"white\"}]" + "edges" : "[{\"source\":{\"title\":\"earth_data_utils\",\"id\":\"wttkvt-GJjq8\",\"x\":524.66552734375,\"y\":562,\"color\":\"green\"},\"target\":{\"title\":\"search_data\",\"id\":\"yvo1ds-96vns\",\"x\":751,\"y\":559,\"color\":\"green\"}},{\"source\":{\"title\":\"search_data\",\"id\":\"yvo1ds-96vns\",\"x\":751,\"y\":559,\"color\":\"green\"},\"target\":{\"title\":\"earth_access_authenticate\",\"id\":\"cgvhiy-BgnXM\",\"x\":983.4237060546875,\"y\":558,\"color\":\"darkseagreen\",\"skip\":false}},{\"source\":{\"title\":\"earth_access_authenticate\",\"id\":\"cgvhiy-BgnXM\",\"x\":983.4237060546875,\"y\":558,\"color\":\"darkseagreen\",\"skip\":false},\"target\":{\"title\":\"s3_file_storage\",\"id\":\"1b4ko0-4k9iL\",\"x\":984.9932250976562,\"y\":687.6644897460938,\"color\":\"green\"}}]", + "nodes" : "[{\"title\":\"earth_data_utils\",\"id\":\"wttkvt-GJjq8\",\"x\":524.66552734375,\"y\":562,\"color\":\"green\"},{\"title\":\"search_data\",\"id\":\"yvo1ds-96vns\",\"x\":751,\"y\":559,\"color\":\"green\"},{\"title\":\"earth_access_authenticate\",\"id\":\"cgvhiy-BgnXM\",\"x\":983.4237060546875,\"y\":558,\"color\":\"darkseagreen\",\"skip\":false},{\"title\":\"s3_file_storage\",\"id\":\"1b4ko0-4k9iL\",\"x\":984.9932250976562,\"y\":687.6644897460938,\"color\":\"green\"}]" }