From 1b82164dace37da770ab264dddc10df41c00da9c Mon Sep 17 00:00:00 2001
From: Evelin <evelin.aasna@fu-berlin.de>
Date: Thu, 7 Nov 2024 15:30:56 +0100
Subject: [PATCH] Revert long matches

---
 include/utilities/consolidate/consolidate_matches.hpp | 2 +-
 src/consolidate/consolidate_matches.cpp               | 6 +++---
 2 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/include/utilities/consolidate/consolidate_matches.hpp b/include/utilities/consolidate/consolidate_matches.hpp
index 05e24f74..76041a3c 100644
--- a/include/utilities/consolidate/consolidate_matches.hpp
+++ b/include/utilities/consolidate/consolidate_matches.hpp
@@ -1,7 +1,7 @@
 #pragma once
 
 #include <filesystem>
-#include <unordered_map>
+#include <map>
 #include <ranges>
 
 #include <valik/shared.hpp>
diff --git a/src/consolidate/consolidate_matches.cpp b/src/consolidate/consolidate_matches.cpp
index cc6a5eca..9e825438 100644
--- a/src/consolidate/consolidate_matches.cpp
+++ b/src/consolidate/consolidate_matches.cpp
@@ -25,11 +25,11 @@ void consolidate_matches(search_arguments const & arguments)
 
     //seqan3::debug_stream << before_duplicate_removal << '\t' << matches.size() << '\n';
     // <query_ind, <refs>>
-    std::unordered_set<std::string> overabundant_queries{}; 
-    std::unordered_set<std::string> disabled_queries{};
+    std::set<std::string> overabundant_queries{}; 
+    std::set<std::string> disabled_queries{};
 
     // <query_ind, match_count>>
-    std::unordered_map<std::string, size_t> total_match_counter{};
+    std::map<std::string, size_t> total_match_counter{};
     
     decltype(matches) consolidated_matches{};