- The index now also stores the window and k-mer size (#34):
- This means that old indices cannot be used with a newer raptor version.
- Old indices can be converted by pre-release todo.
- Passing a list of bins is no longer supported. Use a file containg paths to the files instead (#35).
- Raptor accepts a text file containing the path to a bin on each line (#16).
- Threshold option not working (#14).
- Reduced the number of open file handles (#10).