main.yml

name: Tests

on: [push, pull_request]

jobs:
  Linting:
    runs-on: ubuntu-latest

    steps:
      - uses: actions/checkout@v3
      - name: Set up Python
        uses: actions/setup-python@v3
        with:
          python-version: "3.8"
      - name: Linting
        run: |
          pip install pre-commit
          pre-commit run --all-files

  Linux:
    needs: Linting
    runs-on: ubuntu-latest
    strategy:
      max-parallel: 4
      matrix:
        python-version: ["3.8", "3.9", "3.10"]

    steps:
    - uses: actions/checkout@v3
    - name: Set up Python ${{ matrix.python-version }}
      uses: actions/setup-python@v3
      with:
        python-version: ${{ matrix.python-version }}
    - name: Install dependencies
      run: |
        pip install -r requirements-dev.txt
        pip install sympy # needed for notebook 9, but not required for pysindy
    - name: Build the docs
      # Not exactly how RTD does it, but close.
      run: |
        sudo apt-get install pandoc
        cd docs
        python -m sphinx -T -E -W -b html -d _build/doctrees . _build/html
        cd ..
    - name: Test with pytest
      run: |
        pytest test --cov=pysindy --cov-report=xml
    - name: Upload coverage to Codecov
      uses: codecov/codecov-action@v3
      with:
        token: ${{ secrets.CODECOV_TOKEN }}
        file: ./coverage.xml
    - name: Execute feature notebook with papermill
      run: |
        pip install papermill
        cd examples
        papermill --report-mode 1_feature_overview.ipynb out.json
    - uses: actions/cache@v3
      with:
        path: ~/.cache/pip
        key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements-dev.txt') }}
        restore-keys: |
          ${{ runner.os }}-pip-