From d8c4712b3780b22aab1281328b95108da2e1bd68 Mon Sep 17 00:00:00 2001
From: Daniel Weindl <daniel.weindl@helmholtz-muenchen.de>
Date: Sun, 27 Aug 2023 16:17:42 +0200
Subject: [PATCH] isort

---
 .pre-commit-config.yaml    | 6 ++++++
 sbmlmath/__init__.py       | 5 ++---
 sbmlmath/cfunction.py      | 8 ++++++--
 sbmlmath/mathml_parser.py  | 5 +++--
 sbmlmath/mathml_printer.py | 3 +--
 tests/test_parser.py       | 1 +
 tests/test_printer.py      | 2 +-
 7 files changed, 20 insertions(+), 10 deletions(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 6eb5a75..c30a89d 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -1,6 +1,12 @@
 # See https://pre-commit.com for more information
 # See https://pre-commit.com/hooks.html for more hooks
 repos:
+- repo: https://github.com/pycqa/isort
+  rev: 5.12.0
+  hooks:
+    - id: isort
+      name: isort (python)
+      args: ["--profile", "black", "--filter-files"]
 -   repo: https://github.com/pre-commit/pre-commit-hooks
     rev: v3.2.0
     hooks:
diff --git a/sbmlmath/__init__.py b/sbmlmath/__init__.py
index 88e6462..b3dbaa3 100644
--- a/sbmlmath/__init__.py
+++ b/sbmlmath/__init__.py
@@ -3,12 +3,11 @@
 import libsbml
 import sympy as sp
 
+from .cfunction import *
+from .csymbol import *
 from .mathml_parser import SBMLMathMLParser
 from .mathml_printer import SBMLMathMLPrinter
 from .species_symbol import SpeciesSymbol
-from .csymbol import *
-from .cfunction import *
-
 
 __all__ = [
     "SBMLMathMLParser",
diff --git a/sbmlmath/cfunction.py b/sbmlmath/cfunction.py
index b24fc23..57bc714 100644
--- a/sbmlmath/cfunction.py
+++ b/sbmlmath/cfunction.py
@@ -48,5 +48,9 @@ def __new__(
 
 
 # SBML-defined functions
-delay = CFunction("delay", definition_url="http://www.sbml.org/sbml/symbols/delay")
-rate_of = CFunction("rateOf", definition_url="http://www.sbml.org/sbml/symbols/rateOf")
+delay = CFunction(
+    "delay", definition_url="http://www.sbml.org/sbml/symbols/delay"
+)
+rate_of = CFunction(
+    "rateOf", definition_url="http://www.sbml.org/sbml/symbols/rateOf"
+)
diff --git a/sbmlmath/mathml_parser.py b/sbmlmath/mathml_parser.py
index 97e49f6..4958559 100644
--- a/sbmlmath/mathml_parser.py
+++ b/sbmlmath/mathml_parser.py
@@ -4,14 +4,15 @@
 from functools import reduce
 from io import BytesIO
 from typing import Union
+
 import sympy as sp
 from lxml import etree
 from pint import UnitRegistry
 from sympy.logic.boolalg import Boolean, BooleanFalse, BooleanTrue
 
-from .species_symbol import SpeciesSymbol
-from .csymbol import CSymbol
 from .cfunction import CFunction
+from .csymbol import CSymbol
+from .species_symbol import SpeciesSymbol
 
 __all__ = ["SBMLMathMLParser"]
 
diff --git a/sbmlmath/mathml_printer.py b/sbmlmath/mathml_printer.py
index ba43e61..6ab2fca 100644
--- a/sbmlmath/mathml_printer.py
+++ b/sbmlmath/mathml_printer.py
@@ -4,9 +4,8 @@
 import sympy as sp
 from sympy.printing.mathml import MathMLContentPrinter
 
-from .species_symbol import SpeciesSymbol
 from .csymbol import CSymbol
-
+from .species_symbol import SpeciesSymbol
 
 __all__ = ["SBMLMathMLPrinter"]
 
diff --git a/tests/test_parser.py b/tests/test_parser.py
index c67efaa..613682e 100644
--- a/tests/test_parser.py
+++ b/tests/test_parser.py
@@ -1,6 +1,7 @@
 import libsbml
 import pytest
 import sympy as sp
+
 from sbmlmath import *
 
 
diff --git a/tests/test_printer.py b/tests/test_printer.py
index 50caf56..26d6433 100644
--- a/tests/test_printer.py
+++ b/tests/test_printer.py
@@ -1,4 +1,4 @@
-from sbmlmath import SpeciesSymbol, SBMLMathMLPrinter
+from sbmlmath import SBMLMathMLPrinter, SpeciesSymbol
 
 
 def test_species_symbol_repr_type():