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ci.yaml
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name: Tests
on:
push:
workflow_dispatch:
schedule:
- cron: '48 4 * * *'
jobs:
test-ubuntu:
runs-on: ubuntu-latest
strategy:
matrix:
python-version: ["3.9", "3.12"]
steps:
- name: Check out repository
uses: actions/checkout@v4
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- name: Cache pip
uses: actions/cache@v4
with:
path: ~/.cache/pip
key: ${{ runner.os }}-${{ matrix.python-version }}-${{ hashFiles('setup.py') }}
restore-keys: |
${{ runner.os }}-${{ matrix.python-version }}-
- name: Cache / restore SBML test suite
id: cache-sbml-test-suite
uses: actions/cache@v4
with:
path: sbml-test-suite
key: ${{ runner.os }}-sbml-test-suite
- name: Download SBML test suite
if: steps.cache-sbml-test-suite.outputs.cache-hit != 'true'
run: git clone --depth=1 https://github.com/sbmlteam/sbml-test-suite/
- name: Install local packages
run: |
python -m pip install --upgrade pip setuptools && python -m pip install .[test]
- name: Unit tests
env:
SBML_TEST_SUITE_ROOT: "${{ github.workspace }}/sbml-test-suite/"
run: pytest -vv
- name: Run pre-commit hooks
run: pre-commit run --all-files
test-macos:
runs-on: macos-latest
strategy:
matrix:
python-version: ["3.9", "3.12"]
steps:
- name: Check out repository
uses: actions/checkout@v4
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- name: Cache pip
uses: actions/cache@v4
with:
path: ~/.cache/pip
key: ${{ runner.os }}-${{ matrix.python-version }}-${{ hashFiles('setup.py') }}
restore-keys: |
${{ runner.os }}-${{ matrix.python-version }}-
- name: Cache / restore SBML test suite
id: cache-sbml-test-suite
uses: actions/cache@v4
with:
path: sbml-test-suite
key: ${{ runner.os }}-sbml-test-suite
- name: Download SBML test suite
if: steps.cache-sbml-test-suite.outputs.cache-hit != 'true'
run: git clone --depth=1 https://github.com/sbmlteam/sbml-test-suite/
- name: Install local packages
run: |
python -m pip install --upgrade pip setuptools && python -m pip install .[test]
- name: Unit tests
env:
SBML_TEST_SUITE_ROOT: "${{ github.workspace }}/sbml-test-suite/"
run: pytest -vv
test-windows:
runs-on: windows-latest
strategy:
matrix:
python-version: ["3.9", "3.12"]
steps:
- name: Check out repository
uses: actions/checkout@v4
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- name: Cache pip
uses: actions/cache@v4
with:
path: ~/.cache/pip
key: ${{ runner.os }}-${{ matrix.python-version }}-${{ hashFiles('setup.py') }}
restore-keys: |
${{ runner.os }}-${{ matrix.python-version }}-
- name: Cache / restore SBML test suite
id: cache-sbml-test-suite
uses: actions/cache@v4
with:
path: sbml-test-suite
key: ${{ runner.os }}-sbml-test-suite
- name: Download SBML test suite
if: steps.cache-sbml-test-suite.outputs.cache-hit != 'true'
run: git clone --depth=1 https://github.com/sbmlteam/sbml-test-suite/
- name: Install local packages
run: |
python -m pip install --upgrade pip setuptools && python -m pip install .[test]
- name: Unit tests
env:
SBML_TEST_SUITE_ROOT: "${{ github.workspace }}/sbml-test-suite/"
run: pytest -vv