- Initial unstable release of the
dms-viz.github.ioAPI.
- N/A (This is the first release)
- N/A (This is the first release)
- N/A (This is the first release)
- Ligands can also be colored by the element identity of their atoms.
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- Users can provide a URL to automatically load a markdown description file.
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- Accommodate an option for specifying the negative end of the color scale for each condtion.
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- Accommodate an option for specifying the minimum and maximum range on filter slides.
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- Add LaTeX support to markdown rendering using katex.
- N/A
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- Fix the color scale of the protein to show only white when the domain of the data is [0, 0].
- Set the default value of
floortofalse.
- N/A
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- Add link to documentation website
- Change the plot sizing to be more consistent in
<iframes>
- N/A
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- Fix a bug that cuases the size of the plot to be stochasitc due to the timing of the sidebar collapsing when the window is sufficently small.
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- Add bond order to ball+stick structure for the ligands.
- Add the ability to show nucleotides.
- Be more selective when showing data chains or background chains to only show the protein.
- N/A
- N/A
- Added the ability to show non-carbon bonded hydrogens.
- Added the ability to color the protein by element color.
- Don't show hydrogens by default in the structure.
- Increased the default radiusScale for ball+stick on ligands to make them more visible
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- Changed the default example dataset to antibody escape data with antibodies in the structure.
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- Fixed a bug where the structure wouldn't recolor when the filters were used.
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- Added a button to select all sites in the protein and set selection as the default.
- Refactored how selection works in the chart object.
- Made the protein object emit an even on successful loading
- Stopped redundant protein loading when the dataset is changed but the protein is the same
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- Sites on the protein can now be selected or deselected by clicking on points in the focus plot.
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- Markdown can now be rendered from both a URL and a local JSON file.
- Refactored Main.js entrypoint to the application to be a bit simpler.
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- Fixed a bug in the Protein class that improperly labels and colors sites over discontinuous chains (i.e. if there are more than one measurement for the same 'protein_site'.)
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- Fixed a bug in the Protein class that improperly labeled reference sites on the structure when the data changed. Now the tooltip is updated when the data changes.
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- Accommodate an additional value in the filter columns that lets you specify a default value for the slider in the json dataset.
- N/A
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- Fix a bug where the filter values in the URL were getting overwritten by a default no matter what.
- N/A
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- Support for insertion codes
- The software version is dynamically displayed on the page
- Meta tags for SEO
- Add median as a summary statistic
- Chart options are open by default
- Select all sites is now a button
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- Added a button to change the color of the protein background
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- Complete overhaul of CSS and UI components.
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- Fixed the padding around the plots to be the same as the navbar.
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- Harmonize the padding, margins, and min/max widths of the sidebar and main content.
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- Make sure that submenus are correctly resized when the data changes.
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- Fixes a bug where the axis titles and tooltips weren't changing between datasets by removing dataset-defined values from the Chart constructor.
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- Allow users to set the min, max, and center of the color scales.
- Allow for color scales that aren't symmetric around 0.
- Clear the URI parameters when data is loaded from a local file.
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- Allow users to set the default summary metric and default value for floor
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- Menu options 'summary' and 'floor' set in the config file populate the menu when the dataset changes.
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- Add style to color hyperlinks in markdown.
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- Fix a bug where floor was determined by the config in the chart but not for the protein.
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- Fix a bug in NGL by bumping it to the most recent version.
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- Make a release for JOSS
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- Make it easier to select and de-select options with double-clicking.
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