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Ben-Salmon committed Aug 25, 2024
1 parent f0d3ab0 commit 50cf6b6
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Showing 2 changed files with 21 additions and 25 deletions.
20 changes: 0 additions & 20 deletions 02_Noise2Void/solution.ipynb
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]
},
"outputs": [],
"source": [
"# Create a configuration using the helper function\n",
"training_config = create_n2v_configuration(\n",
" experiment_name=\"dl4mia_n2v_sem\",\n",
" data_type=\"tiff\",\n",
" axes=\"YX\",\n",
" patch_size=[64, 64],\n",
" batch_size=128,\n",
" num_epochs=10,\n",
" roi_size=3,\n",
" masked_pixel_percentage=0.05,\n",
" logger=\"tensorboard\"\n",
")"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# Create a configuration using the helper function\n",
"training_config = create_n2v_configuration(\n",
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26 changes: 21 additions & 5 deletions 03_COSDD/solution.ipynb
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Expand Up @@ -747,7 +747,7 @@
"metadata": {},
"source": [
"### 2.1. Load test data\n",
"The images that we want to denoise are loaded here. These are the same that we used for training, but we'll only load 10 to speed up inference."
"The images that we want to denoise are loaded here. These are the same that we used for training, but we'll only load 5 to speed up inference."
]
},
{
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{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"metadata": {
"tags": [
"task"
]
},
"outputs": [],
"source": [
"model_name = ... ### Insert a string here\n",
Expand All @@ -849,7 +853,11 @@
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"metadata": {
"tags": [
"solution"
]
},
"outputs": [],
"source": [
"model_name = \"mito-confocal\" ### Insert a string here\n",
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{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"metadata": {
"tags": [
"task"
]
},
"outputs": [],
"source": [
"use_direct_denoiser = False\n",
Expand All @@ -1004,7 +1016,11 @@
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"metadata": {
"tags": [
"solution"
]
},
"outputs": [],
"source": [
"use_direct_denoiser = False\n",
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