diff --git a/.readthedocs.yml b/.readthedocs.yml index e1743e7..8fd7006 100644 --- a/.readthedocs.yml +++ b/.readthedocs.yml @@ -4,10 +4,13 @@ build: os: ubuntu-22.04 tools: python: "3.11" - jobs: - post_create_environment: - - python -m pip install poetry - post_install: - - VIRTUAL_ENV=$READTHEDOCS_VIRTUALENV_PATH poetry install --only main,docs + sphinx: configuration: docs/conf.py + +python: + install: + - method: pip + path: . + extra_requirements: + - doc diff --git a/Makefile b/Makefile index 0428116..39ded40 100644 --- a/Makefile +++ b/Makefile @@ -1,29 +1,38 @@ .PHONY: docs tests PYTHON_FILES = cassis tests +clean: + rm -Rf build dkpro_cassis.egg-info dist + # Dependencies +pin: + pip-compile -o requirements.txt pyproject.toml + pip-compile --extra dev -o requirements-dev.txt pyproject.toml + pip-compile --extra doc -o requirements-doc.txt pyproject.toml + dependencies: - poetry install + pip install pip-tools + pip-sync requirements.txt requirements-dev.txt # Tests unit-tests: - poetry run py.test --cov=cassis --cov-branch --cov-fail-under=90 tests + python -m pytest --cov=cassis --cov-branch --cov-fail-under=90 tests tests: unit-tests integ-tests coverage: - poetry run py.test --cov=cassis --cov-branch --cov-fail-under=90 --cov-report=xml:coverage.xml -m "not performance" tests + python -m pytest --cov=cassis --cov-branch --cov-fail-under=90 --cov-report=xml:coverage.xml -m "not performance" tests # Static analysis/linting format: - poetry run ruff format $(PYTHON_FILES) + ruff format $(PYTHON_FILES) lint: # stop the build if there are Python syntax errors or undefined names - poetry run ruff check --select=E9,F63,F7,F82 --output-format=full $(PYTHON_FILES) + ruff check --select=E9,F63,F7,F82 --output-format=full $(PYTHON_FILES) # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide # flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics - poetry run ruff check --exit-zero $(PYTHON_FILES) + ruff check --exit-zero $(PYTHON_FILES) # Docs docs: @@ -31,15 +40,4 @@ docs: # Building and publishing build: unit-tests lint - poetry build - -publish: build - poetry publish - -# CI - -ci-publish: - poetry publish --build --username "${PYPI_USERNAME}" --password "${PYPI_PASSWORD}" --no-interaction - -ci-bump-version: - poetry run bump2version patch + python -m build diff --git a/cassis/json.py b/cassis/json.py index b3ce2d2..6c39384 100644 --- a/cassis/json.py +++ b/cassis/json.py @@ -8,12 +8,35 @@ from toposort import toposort_flatten from cassis.cas import NAME_DEFAULT_SOFA, Cas, IdGenerator, Sofa, View -from cassis.typesystem import TYPE_NAME_ANNOTATION, TypeSystem, is_predefined, merge_typesystems, TYPE_NAME_SOFA, \ - FEATURE_BASE_NAME_SOFAARRAY, array_type_name_for_type, FEATURE_BASE_NAME_SOFASTRING, FEATURE_BASE_NAME_SOFAID, \ - FEATURE_BASE_NAME_SOFAMIME, FEATURE_BASE_NAME_SOFANUM, FEATURE_BASE_NAME_SOFAURI, TYPE_NAME_FS_ARRAY, \ - TYPE_NAME_BYTE_ARRAY, TYPE_NAME_FLOAT_ARRAY, TYPE_NAME_DOUBLE_ARRAY, TypeSystemMode, TYPE_NAME_DOCUMENT_ANNOTATION, \ - Type, Feature, TYPE_NAME_TOP, is_primitive_array, TYPE_NAME_FLOAT, TYPE_NAME_DOUBLE, \ - element_type_name_for_array_type, is_primitive, is_array +from cassis.typesystem import ( + TYPE_NAME_ANNOTATION, + TypeSystem, + is_predefined, + merge_typesystems, + TYPE_NAME_SOFA, + FEATURE_BASE_NAME_SOFAARRAY, + array_type_name_for_type, + FEATURE_BASE_NAME_SOFASTRING, + FEATURE_BASE_NAME_SOFAID, + FEATURE_BASE_NAME_SOFAMIME, + FEATURE_BASE_NAME_SOFANUM, + FEATURE_BASE_NAME_SOFAURI, + TYPE_NAME_FS_ARRAY, + TYPE_NAME_BYTE_ARRAY, + TYPE_NAME_FLOAT_ARRAY, + TYPE_NAME_DOUBLE_ARRAY, + TypeSystemMode, + TYPE_NAME_DOCUMENT_ANNOTATION, + Type, + Feature, + TYPE_NAME_TOP, + is_primitive_array, + TYPE_NAME_FLOAT, + TYPE_NAME_DOUBLE, + element_type_name_for_array_type, + is_primitive, + is_array, +) RESERVED_FIELD_PREFIX = "%" REF_FEATURE_PREFIX = "@" diff --git a/poetry.lock b/poetry.lock deleted file mode 100644 index 5225f3e..0000000 --- a/poetry.lock +++ /dev/null @@ -1,1119 +0,0 @@ -# This file is automatically @generated by Poetry 1.8.2 and should not be changed by hand. - -[[package]] -name = "alabaster" -version = "0.7.13" -description = "A configurable sidebar-enabled Sphinx theme" -optional = false -python-versions = ">=3.6" -files = [ - {file = "alabaster-0.7.13-py3-none-any.whl", hash = "sha256:1ee19aca801bbabb5ba3f5f258e4422dfa86f82f3e9cefb0859b283cdd7f62a3"}, - {file = "alabaster-0.7.13.tar.gz", hash = "sha256:a27a4a084d5e690e16e01e03ad2b2e552c61a65469419b907243193de1a84ae2"}, -] - -[[package]] -name = "attrs" -version = "21.4.0" -description = "Classes Without Boilerplate" -optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" -files = [ - {file = "attrs-21.4.0-py2.py3-none-any.whl", hash = "sha256:2d27e3784d7a565d36ab851fe94887c5eccd6a463168875832a1be79c82828b4"}, - {file = "attrs-21.4.0.tar.gz", hash = "sha256:626ba8234211db98e869df76230a137c4c40a12d72445c45d5f5b716f076e2fd"}, -] - -[package.extras] -dev = ["cloudpickle", "coverage[toml] (>=5.0.2)", "furo", "hypothesis", "mypy", "pre-commit", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "six", "sphinx", "sphinx-notfound-page", "zope.interface"] -docs = ["furo", "sphinx", "sphinx-notfound-page", "zope.interface"] -tests = ["cloudpickle", "coverage[toml] (>=5.0.2)", "hypothesis", "mypy", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "six", "zope.interface"] -tests-no-zope = ["cloudpickle", "coverage[toml] (>=5.0.2)", "hypothesis", "mypy", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "six"] - -[[package]] -name = "babel" -version = "2.15.0" -description = "Internationalization utilities" -optional = false -python-versions = ">=3.8" -files = [ - {file = "Babel-2.15.0-py3-none-any.whl", hash = "sha256:08706bdad8d0a3413266ab61bd6c34d0c28d6e1e7badf40a2cebe67644e2e1fb"}, - {file = "babel-2.15.0.tar.gz", hash = "sha256:8daf0e265d05768bc6c7a314cf1321e9a123afc328cc635c18622a2f30a04413"}, -] - -[package.dependencies] -pytz = {version = ">=2015.7", markers = "python_version < \"3.9\""} - -[package.extras] -dev = ["freezegun (>=1.0,<2.0)", "pytest (>=6.0)", "pytest-cov"] - -[[package]] -name = "certifi" -version = "2024.2.2" -description = "Python package for providing Mozilla's CA Bundle." -optional = false -python-versions = ">=3.6" -files = [ - {file = "certifi-2024.2.2-py3-none-any.whl", hash = "sha256:dc383c07b76109f368f6106eee2b593b04a011ea4d55f652c6ca24a754d1cdd1"}, - {file = "certifi-2024.2.2.tar.gz", hash = "sha256:0569859f95fc761b18b45ef421b1290a0f65f147e92a1e5eb3e635f9a5e4e66f"}, -] - -[[package]] -name = "charset-normalizer" -version = "3.3.2" -description = "The Real First Universal Charset Detector. 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-python-versions = ">=3.8.0" -content-hash = "c4a5d01f8ac997ccf8f09ee5bf9035a9dbeb44889f83177650d5f0f4d2fdfcec" diff --git a/pyproject.toml b/pyproject.toml index c10d3f1..954a3cd 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,17 +1,18 @@ -[tool.poetry] +[build-system] +requires = ["setuptools", "setuptools-scm"] +build-backend = "setuptools.build_meta" + +[project] name = "dkpro-cassis" version = "0.10.0-dev" -readme = "README.rst" -homepage = "https://dkpro.github.io" -repository = "https://github.com/dkpro/dkpro-cassis" -documentation = "https://cassis.readthedocs.io" +dynamic = ["dependencies", "optional-dependencies"] +requires-python = ">=3.8" +authors = [ { name = "The DKPro cassis team" } ] +maintainers = [ { name = "Richard Eckart de Castilho" } ] description = "UIMA CAS processing library in Python" -authors = ["The DKPro cassis team"] -maintainers = [ "Richard Eckart de Castilho" ] -license = "Apache-2.0" -packages = [ - { include = "cassis" }, -] +readme = "README.rst" +license = {file = "LICENSE"} +keywords = [] classifiers = [ "Development Status :: 4 - Beta", "Intended Audience :: Developers", @@ -27,31 +28,15 @@ classifiers = [ "Topic :: Text Processing :: Linguistic" ] -[tool.poetry.dependencies] -python = ">=3.8.0" -lxml = "^4.9.1" -attrs = "^21.2,<24" -sortedcontainers = "==2.4.*" -toposort = "==1.7" -more-itertools = "^8.12,<9" -deprecation = "==2.1.*" -importlib_resources = "==5.4.*" - -[tool.poetry.dev-dependencies] -pytest = "^7.2" -tox = "==3.24.*" -lxml-asserts = "==0.1.*" -pytest-lazy-fixture = "==0.6.*" -pytest-cov = "^3.0" -codecov = "^2.1" -rstcheck = "==3.3.*" -docutils = "!=0.21" -ruff = "^0.4.3" +[tool.setuptools.dynamic] +dependencies = { file = ["requirements.in"] } +optional-dependencies.dev = { file = ["requirements-dev.in"] } +optional-dependencies.doc = { file = ["requirements-dev.in"] } -[tool.poetry.group.docs.dependencies] -sphinx = "^7.1.2" -sphinx-autodoc-typehints = "^1.25.3" -sphinx-rtd-theme = "^2.0.0" +[project.urls] +Homepage = "https://dkpro.github.io" +Documentation = "https://cassis.readthedocs.io" +Repository = "https://github.com/dkpro/dkpro-cassis" [tool.ruff] line-length = 120 @@ -59,7 +44,3 @@ target-version = "py38" [tool.ruff.lint.per-file-ignores] "**/{tests,docs,tools}/*" = [ "F403", "F405" ] - -[build-system] -requires = ["poetry_core>=1.0.0"] -build-backend = "poetry.core.masonry.api" diff --git a/requirements-dev.in b/requirements-dev.in new file mode 100644 index 0000000..f1c994b --- /dev/null +++ b/requirements-dev.in @@ -0,0 +1,10 @@ +pytest~=7.2 +tox~=3.24 +lxml-asserts~=0.1 +pytest-lazy-fixture~=0.6 +pytest-cov~=3.0 +codecov~=2.1 +rstcheck~=3.3 +docutils~=0.20,!=0.21 +ruff~=0.4.3 +pip-tools~=7.4.1 diff --git a/requirements-dev.txt b/requirements-dev.txt new file mode 100644 index 0000000..0cffd99 --- /dev/null +++ b/requirements-dev.txt @@ -0,0 +1,116 @@ +# +# This file is autogenerated by pip-compile with Python 3.9 +# by the following command: +# +# pip-compile --extra=dev --output-file=requirements-dev.txt pyproject.toml +# +attrs==23.2.0 + # via dkpro-cassis (pyproject.toml) +build==1.2.1 + # via pip-tools +certifi==2024.2.2 + # via requests +charset-normalizer==3.3.2 + # via requests +click==8.1.7 + # via pip-tools +codecov==2.1.13 + # via dkpro-cassis (pyproject.toml) +coverage[toml]==7.5.1 + # via + # codecov + # pytest-cov +deprecation==2.1.0 + # via dkpro-cassis (pyproject.toml) +distlib==0.3.8 + # via virtualenv +docutils==0.21.2 + # via + # dkpro-cassis (pyproject.toml) + # rstcheck +exceptiongroup==1.2.1 + # via pytest +filelock==3.14.0 + # via + # tox + # virtualenv +idna==3.7 + # via requests +importlib-metadata==7.1.0 + # via build +importlib-resources==5.13.0 + # via dkpro-cassis (pyproject.toml) +iniconfig==2.0.0 + # via pytest +lxml==4.9.4 + # via + # dkpro-cassis (pyproject.toml) + # lxml-asserts +lxml-asserts==0.1.2 + # via dkpro-cassis (pyproject.toml) +more-itertools==8.14.0 + # via dkpro-cassis (pyproject.toml) +packaging==24.0 + # via + # build + # deprecation + # pytest + # tox +pip-tools==7.4.1 + # via dkpro-cassis (pyproject.toml) +platformdirs==4.2.1 + # via virtualenv +pluggy==1.5.0 + # via + # pytest + # tox +py==1.11.0 + # via tox +pyproject-hooks==1.1.0 + # via + # build + # pip-tools +pytest==7.4.4 + # via + # dkpro-cassis (pyproject.toml) + # pytest-cov + # pytest-lazy-fixture +pytest-cov==3.0.0 + # via dkpro-cassis (pyproject.toml) +pytest-lazy-fixture==0.6.3 + # via dkpro-cassis (pyproject.toml) +requests==2.31.0 + # via codecov +rstcheck==3.5.0 + # via dkpro-cassis (pyproject.toml) +ruff==0.4.3 + # via dkpro-cassis (pyproject.toml) +six==1.16.0 + # via tox +sortedcontainers==2.4.0 + # via dkpro-cassis (pyproject.toml) +tomli==2.0.1 + # via + # build + # coverage + # pip-tools + # pytest + # tox +toposort==1.10 + # via dkpro-cassis (pyproject.toml) +tox==3.28.0 + # via dkpro-cassis (pyproject.toml) +urllib3==2.2.1 + # via requests +virtualenv==20.26.1 + # via tox +wheel==0.43.0 + # via pip-tools +zipp==3.18.1 + # via + # importlib-metadata + # importlib-resources + +# The following packages are considered to be unsafe in a requirements file: +# pip +# setuptools diff --git a/requirements-doc.in b/requirements-doc.in new file mode 100644 index 0000000..2cd888c --- /dev/null +++ b/requirements-doc.in @@ -0,0 +1,3 @@ +sphinx +sphinx-autodoc-typehints +sphinx-rtd-theme diff --git a/requirements-doc.txt b/requirements-doc.txt new file mode 100644 index 0000000..0305f09 --- /dev/null +++ b/requirements-doc.txt @@ -0,0 +1,116 @@ +# +# This file is autogenerated by pip-compile with Python 3.9 +# by the following command: +# +# pip-compile --extra=doc --output-file=requirements-doc.txt pyproject.toml +# +attrs==23.2.0 + # via dkpro-cassis (pyproject.toml) +build==1.2.1 + # via pip-tools +certifi==2024.2.2 + # via requests +charset-normalizer==3.3.2 + # via requests +click==8.1.7 + # via pip-tools +codecov==2.1.13 + # via dkpro-cassis (pyproject.toml) +coverage[toml]==7.5.1 + # via + # codecov + # pytest-cov +deprecation==2.1.0 + # via dkpro-cassis (pyproject.toml) +distlib==0.3.8 + # via virtualenv +docutils==0.21.2 + # via + # dkpro-cassis (pyproject.toml) + # rstcheck +exceptiongroup==1.2.1 + # via pytest +filelock==3.14.0 + # via + # tox + # virtualenv +idna==3.7 + # via requests +importlib-metadata==7.1.0 + # via build +importlib-resources==5.13.0 + # via dkpro-cassis (pyproject.toml) +iniconfig==2.0.0 + # via pytest +lxml==4.9.4 + # via + # dkpro-cassis (pyproject.toml) + # lxml-asserts +lxml-asserts==0.1.2 + # via dkpro-cassis (pyproject.toml) +more-itertools==8.14.0 + # via dkpro-cassis (pyproject.toml) +packaging==24.0 + # via + # build + # deprecation + # pytest + # tox +pip-tools==7.4.1 + # via dkpro-cassis (pyproject.toml) +platformdirs==4.2.1 + # via virtualenv +pluggy==1.5.0 + # via + # pytest + # tox +py==1.11.0 + # via tox +pyproject-hooks==1.1.0 + # via + # build + # pip-tools +pytest==7.4.4 + # via + # dkpro-cassis (pyproject.toml) + # pytest-cov + # pytest-lazy-fixture +pytest-cov==3.0.0 + # via dkpro-cassis (pyproject.toml) +pytest-lazy-fixture==0.6.3 + # via dkpro-cassis (pyproject.toml) +requests==2.31.0 + # via codecov +rstcheck==3.5.0 + # via dkpro-cassis (pyproject.toml) +ruff==0.4.3 + # via dkpro-cassis (pyproject.toml) +six==1.16.0 + # via tox +sortedcontainers==2.4.0 + # via dkpro-cassis (pyproject.toml) +tomli==2.0.1 + # via + # build + # coverage + # pip-tools + # pytest + # tox +toposort==1.10 + # via dkpro-cassis (pyproject.toml) +tox==3.28.0 + # via dkpro-cassis (pyproject.toml) +urllib3==2.2.1 + # via requests +virtualenv==20.26.1 + # via tox +wheel==0.43.0 + # via pip-tools +zipp==3.18.1 + # via + # importlib-metadata + # importlib-resources + +# The following packages are considered to be unsafe in a requirements file: +# pip +# setuptools diff --git a/requirements.in b/requirements.in new file mode 100644 index 0000000..6c9f508 --- /dev/null +++ b/requirements.in @@ -0,0 +1,7 @@ +lxml~=4.9.1 +attrs>=21.2,<24 +sortedcontainers~=2.4 +toposort~=1.7 +more-itertools~=8.12 +deprecation~=2.1 +importlib_resources~=5.4 diff --git a/requirements.txt b/requirements.txt new file mode 100644 index 0000000..833980a --- /dev/null +++ b/requirements.txt @@ -0,0 +1,24 @@ +# +# This file is autogenerated by pip-compile with Python 3.9 +# by the following command: +# +# pip-compile --output-file=requirements.txt pyproject.toml +# +attrs==23.2.0 + # via dkpro-cassis (pyproject.toml) +deprecation==2.1.0 + # via dkpro-cassis (pyproject.toml) +importlib-resources==5.13.0 + # via dkpro-cassis (pyproject.toml) +lxml==4.9.4 + # via dkpro-cassis (pyproject.toml) +more-itertools==8.14.0 + # via dkpro-cassis (pyproject.toml) +packaging==24.0 + # via deprecation +sortedcontainers==2.4.0 + # via dkpro-cassis (pyproject.toml) +toposort==1.10 + # via dkpro-cassis (pyproject.toml) +zipp==3.18.1 + # via importlib-resources