Skip to content

Bump certifi from 2022.12.7 to 2023.7.22 #51

Bump certifi from 2022.12.7 to 2023.7.22

Bump certifi from 2022.12.7 to 2023.7.22 #51

Workflow file for this run

name: Planemo
on: [push, pull_request]
env:
GALAXY_BRANCH: release_22.05
jobs:
planemo_test:
name: Planemo test
runs-on: ubuntu-latest
strategy:
matrix:
chunk: [1, 2, 3]
steps:
- uses: actions/checkout@v1
- uses: "dpryan79/github-actions/@master"
- name: planemo
run: |
source activate foo
conda update -c conda-forge -c bioconda samtools
./.planemo.sh ${{ matrix.chunk }} ${{ env.GALAXY_BRANCH }}
- uses: actions/upload-artifact@v3
with:
name: 'Tool test output ${{ matrix.chunk }}'
path: upload
planemo_combine_outputs:
name: Combine chunked test results
needs: planemo_test
runs-on: ubuntu-latest
strategy:
matrix:
python-version: ['3.7']
steps:
- uses: actions/download-artifact@v3
with:
path: artifacts
- uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- name: Cache .cache/pip
uses: actions/cache@v3
id: cache-pip
with:
path: ~/.cache/pip
key: pip_cache_py_${{ matrix.python-version }}_gxy_${{ env.GALAXY_BRANCH }}
- name: Combine outputs
uses: galaxyproject/planemo-ci-action@v1
id: combine
with:
mode: combine
html-report: true
- uses: actions/upload-artifact@v3
with:
name: 'All tool test results'
path: upload
- name: Check outputs
uses: galaxyproject/planemo-ci-action@v1
id: check
with:
mode: check