You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
FYI while trying to install HiCEplorer version 3.7.3 (from release archive) using the described method in README, ie: python setup.py install
I have the following error message.
/opt/gensoft/exe/HiCExplorer/3.7.3/venv/lib/python3.10/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'hicexplorer.trained_models' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'hicexplorer.trained_models' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'hicexplorer.trained_models' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
You can read more about "package discovery" on setuptools documentation page:
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'hicexplorer.trained_models' to be distributed and are
already explicitly excluding 'hicexplorer.trained_models' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
You can read more about "package data files" on setuptools documentation page:
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
NB python -p pip install . is successfull.
regards
Eric
The text was updated successfully, but these errors were encountered:
Hello
FYI while trying to install HiCEplorer version 3.7.3 (from release archive) using the described method in README, ie:
python setup.py install
I have the following error message.
NB
python -p pip install .
is successfull.regards
Eric
The text was updated successfully, but these errors were encountered: