From cf1d4cfbea48df9c258eec4a5022d9d7f9bbfaed Mon Sep 17 00:00:00 2001 From: feiyang <2100011095@stu.pku.edu.cn> Date: Tue, 12 Nov 2024 10:25:38 +0000 Subject: [PATCH 01/20] bfgs --- source/module_relax/mytest/bfgs.cpp | 527 ++++++++++++++++++++++++++++ source/module_relax/mytest/bfgs.h | 49 +++ 2 files changed, 576 insertions(+) create mode 100644 source/module_relax/mytest/bfgs.cpp create mode 100644 source/module_relax/mytest/bfgs.h diff --git a/source/module_relax/mytest/bfgs.cpp b/source/module_relax/mytest/bfgs.cpp new file mode 100644 index 0000000000..2660ae8106 --- /dev/null +++ b/source/module_relax/mytest/bfgs.cpp @@ -0,0 +1,527 @@ +#include "bfgs.h" +#include "module_base/matrix3.h" +#include "module_hamilt_pw/hamilt_pwdft/global.h" + +void bfgs::initialize(int _size) // 初始化H0、H、pos0、force0、force +{ + alpha=70;//relax_scale_force + maxstep=100; //relax_nmax + size=_size; + sign =true; + H = std::vector>(3*size, std::vector(3*size, 0.0)); + for (int i = 0; i < 3*size; ++i) { + H[i][i] = alpha; + } + + pos = std::vector> (size, std::vector(3, 0.0)); + + + pos[0][0]=0; + pos[0][1]=0; + pos[0][2]=0; + pos[1][0]=1.6208698; + pos[1][1]=1.18863785; + pos[1][2]=1.45878282; + + + pos0 = std::vector(3*size, 0.0); + dpos = std::vector>(size, std::vector(3, 0.0)); + force0 = std::vector(3*size, 0.0); + force = std::vector>(size, std::vector(3, 0.0)); + steplength = std::vector(size, 0.0); +} + +bool bfgs::Step(std::vector> _force) // 正式开始每一步迭代 +{ + std::cout<<"enter Step"< move_ion_cart; + move_ion_cart.x = dpos[iat][0] / ModuleBase::BOHR_TO_A / GlobalC::ucell.lat0; + move_ion_cart.y = dpos[iat][1] / ModuleBase::BOHR_TO_A / GlobalC::ucell.lat0; + move_ion_cart.z = dpos[iat][2] / ModuleBase::BOHR_TO_A / GlobalC::ucell.lat0; + /*GlobalC::ucell.atoms[0].tau[iat].x+=move_ion_cart.x; + GlobalC::ucell.atoms[0].tau[iat].y+=move_ion_cart.y; + GlobalC::ucell.atoms[0].tau[iat].z+=move_ion_cart.z;*/ + + + + + /*move_ion_cart.x = dpos[iat][0] ; + move_ion_cart.y = dpos[iat][1] ; + move_ion_cart.z = dpos[iat][2] ;*/ + /*std::cout<<"move_ion_cart"< move_ion_dr = move_ion_cart * GlobalC::ucell.GT; + /*std::cout<<"move_ion_dr"<mbl[ia].x == 1) + { + move_ion[iat * 3] = move_ion_dr.x; + } + if(atom->mbl[ia].y == 1) + { + move_ion[iat * 3 + 1] = move_ion_dr.y ; + } + if(atom->mbl[ia].z == 1) + { + move_ion[iat * 3 + 2] = move_ion_dr.z ; + } + } + /*std::cout<<"move_ion"<0) + { + w=dpos[i][j]; + } + else + { + w=-dpos[i][j]; + } + if(w>a) + { + a=w; + } + } + } + std::cout< changedforce = ReshapeMToV(force); + std::vector changedpos = ReshapeMToV(pos); + + ///输出changedforce和changedpos + std::cout<<"PrintChangedforce"< omega(3*size); + std::vector work(3*size*3*size); + int lwork=3*size*3*size; + int info; + std::vector H_flat; + for(const auto& row : H) + { + H_flat.insert(H_flat.end(), row.begin(), row.end()); + } + int value=3*size; + int* ptr=&value; + dsyev_("V","U",ptr,H_flat.data(),ptr,omega.data(),work.data(),&lwork,&info); + + + //输出V,omega + + std::vector> V(3*size, std::vector(3*size, 0.0)); + for(int i = 0; i < 3*size; i++) + { + for(int j = 0; j < 3*size; j++) + { + V[j][i] = H_flat[3*size*i + j]; + } + } + + std::cout<<"PrintV"< a=DotInMAndV2(V, changedforce); + + + + std::cout<<"Printa"< tmpdpos = DotInMAndV1(V, a); + + + //输出tmpdpos + std::cout<<"PrintTmpdpos"< pos, std::vector force) +{ + if(sign) + { + sign=false; + return; + } + //pos0={0,0,0,1.6208698,1.18863785,1.45878282}; + std::vector dpos = VSubV(pos, pos0); + if(*max_element(dpos.begin(), dpos.end()) < 1e-7) + { + return; + } + //force0={3.94885101,-2.46796196,3.5609503,-3.82079544,2.33869184,-3.43330592}; + std::vector dforce = VSubV(force, force0); + double a = DotInVAndV(dpos, dforce); + std::vector dg = DotInMAndV1(H, dpos); + double b = DotInVAndV(dpos, dg); + H = MSubM(H, MPlus(OuterVAndV(dforce, dforce), a)); + H = MSubM(H, MPlus(OuterVAndV(dg, dg), b)); +} + +void bfgs::DetermineStep() +{ + auto maxsteplength = max_element(steplength.begin(), steplength.end()); + double a = *maxsteplength; + if(a >= maxstep) + { + double scale = maxstep / a; + for(int i = 0; i < size; i++) + { + for(int j=0;j<3;j++) + { + dpos[i][j]*=scale; + } + } + } +} + +// 矩阵方法 + +std::vector bfgs::ReshapeMToV(std::vector> matrix) // 将n*3矩阵变成3n的数组 +{ + int size = matrix.size(); + std::vector result; + result.reserve(3*size); + for (const auto& row : matrix) { + result.insert(result.end(), row.begin(), row.end()); + } + return result; +} + +std::vector> bfgs::MAddM(std::vector> a, std::vector> b) // 矩阵相加 +{ + std::vector> result = std::vector>(a.size(), std::vector(a[0].size(), 0.0)); + for(int i = 0; i < a.size(); i++) + { + for(int j = 0; j < a[0].size(); j++) + { + result[i][j] = a[i][j] + b[i][j]; + } + } + return result; +} + +std::vector bfgs::VSubV(std::vector a, std::vector b) // 向量相减 +{ + std::vector result = std::vector(a.size(), 0.0); + for(int i = 0; i < a.size(); i++) + { + result[i] = a[i] - b[i]; + } + return result; +} + +std::vector> bfgs::ReshapeVToM(std::vector matrix) // 将3n的数组变成n*3矩阵 +{ + std::vector> result = std::vector>(matrix.size() / 3, std::vector(3)); + for(int i = 0; i < result.size(); i++) + { + for(int j = 0; j < 3; j++) + { + result[i][j] = matrix[i*3 + j]; + } + } + return result; +} + +std::vector bfgs::DotInMAndV1(std::vector> matrix, std::vector vec) // 矩阵与向量相乘 +{ + std::vector result(matrix.size(), 0.0); + for(int i = 0; i < result.size(); i++) + { + for(int j = 0; j < vec.size(); j++) + { + result[i] += matrix[i][j] * vec[j]; + } + } + return result; +} +std::vector bfgs::DotInMAndV2(std::vector> matrix, std::vector vec) // 矩阵与向量相乘 +{ + std::vector result(matrix.size(), 0.0); + for(int i = 0; i < result.size(); i++) + { + for(int j = 0; j < vec.size(); j++) + { + result[i] += matrix[j][i] * vec[j]; + } + } + return result; +} + +double bfgs::DotInVAndV(std::vector vec1, std::vector vec2) // 向量与向量点乘 +{ + double result = 0.0; + for(int i = 0; i < vec1.size(); i++) + { + result += vec1[i] * vec2[i]; + } + return result; +} + +std::vector> bfgs::OuterVAndV(std::vector a, std::vector b) // 两个向量外积 +{ + std::vector> result = std::vector>(a.size(), std::vector(b.size(), 0.0)); + for(int i = 0; i < a.size(); i++) + { + for(int j = 0; j < b.size(); j++) + { + result[i][j] = a[i] * b[j]; + } + } + return result; +} + +std::vector> bfgs::MPlus(std::vector> a, double b) // 矩阵除以常数 +{ + std::vector> result = std::vector>(a.size(), std::vector(a[0].size(), 0.0)); + for(int i = 0; i < a.size(); i++) + { + for(int j = 0; j < a[0].size(); j++) + { + result[i][j] = a[i][j] / b; + } + } + return result; +} + +std::vector> bfgs::MSubM(std::vector> a, std::vector> b) // 两个矩阵相减 +{ + std::vector> result = std::vector>(a.size(), std::vector(a[0].size(), 0.0)); + for(int i = 0; i < a.size(); i++) + { + for(int j = 0; j < a[0].size(); j++) + { + result[i][j] = a[i][j] - b[i][j]; + } + } + return result; +} + +std::tuple, std::vector>> bfgs::GetEigenvalueAndEigenVector(std::vector> matrix) // 求特征值和特征向量 +{ + std::vector omega; + std::vector> V; + + return std::make_tuple(omega, V); +} diff --git a/source/module_relax/mytest/bfgs.h b/source/module_relax/mytest/bfgs.h new file mode 100644 index 0000000000..2396f89693 --- /dev/null +++ b/source/module_relax/mytest/bfgs.h @@ -0,0 +1,49 @@ +#ifndef BFGS_H +#define BFGS_H + +#include +#include // 确保包含 头文件 +#include +#include +#include"module_base/lapack_connector.h" + +class bfgs +{ +public: + // 公有成员变量 + double alpha; + int maxstep; + int size; + bool sign; + std::vector steplength; + std::vector> H; + std::vector force0; + std::vector> force; + std::vector pos0; + std::vector> pos; + std::vector> dpos; + + + // 成员函数声明 + void initialize(int _size); + bool Step(std::vector> _force); + void PrepareStep(); + void Update(std::vector pos, std::vector force); + void DetermineStep(); + + // 矩阵方法声明 + std::vector ReshapeMToV(std::vector> matrix); + std::vector> MAddM(std::vector> a, std::vector> b); + std::vector VSubV(std::vector a, std::vector b); + std::vector> ReshapeVToM(std::vector matrix); + std::vector DotInMAndV1(std::vector> matrix, std::vector vec); + std::vector DotInMAndV2(std::vector> matrix, std::vector vec); + double DotInVAndV(std::vector vec1, std::vector vec2); + std::vector> OuterVAndV(std::vector a, std::vector b); + std::vector> MPlus(std::vector> a, double b); + std::vector> MSubM(std::vector> a, std::vector> b); + + std::tuple, std::vector>> GetEigenvalueAndEigenVector(std::vector> matrix); +}; + +#endif // BFGS_H From 710c6ce51946c638a914b727196b111527805001 Mon Sep 17 00:00:00 2001 From: feiyang <2100011095@stu.pku.edu.cn> Date: Tue, 12 Nov 2024 10:43:26 +0000 Subject: [PATCH 02/20] bfgs1 --- source/module_relax/relax_driver.cpp | 14 +++++++++++++- source/module_relax/relax_driver.h | 4 +++- 2 files changed, 16 insertions(+), 2 deletions(-) diff --git a/source/module_relax/relax_driver.cpp b/source/module_relax/relax_driver.cpp index 9806ea975c..82253a6745 100644 --- a/source/module_relax/relax_driver.cpp +++ b/source/module_relax/relax_driver.cpp @@ -25,6 +25,7 @@ void Relax_Driver::relax_driver(ModuleESolver::ESolver* p_esolver) rl.init_relax(GlobalC::ucell.nat); } } + mybfgs.initialize(GlobalC::ucell.nat); this->istep = 1; int force_step = 1; // pengfei Li 2018-05-14 @@ -77,7 +78,7 @@ void Relax_Driver::relax_driver(ModuleESolver::ESolver* p_esolver) if (PARAM.inp.calculation == "relax" || PARAM.inp.calculation == "cell-relax") { - if (PARAM.inp.relax_new) + /*if (PARAM.inp.relax_new) { stop = rl.relax_step(force, stress, this->etot); } @@ -90,7 +91,18 @@ void Relax_Driver::relax_driver(ModuleESolver::ESolver* p_esolver) stress, force_step, stress_step); // pengfei Li 2018-05-14 + }*/ + std::vector> _force(force.nr,std::vector(force.nc,0)); + for(int i = 0; i < force.nr; i++) + { + /* code */ + for(int j=0;j Date: Fri, 15 Nov 2024 05:54:20 +0000 Subject: [PATCH 03/20] Update bfgs method --- SiH2-3et-relax/H.ccECP.upf | 1995 ++++++++++++ SiH2-3et-relax/INPUT | 25 + SiH2-3et-relax/KPT | 4 + SiH2-3et-relax/README.txt | 5 + SiH2-3et-relax/STRU | 30 + SiH2-3et-relax/Si.ccECP.upf | 2720 +++++++++++++++++ SiH2-3et-relax/SiH2-pos-fin.cif | 28 + SiH2-3et-relax/SiH2-pos-ini.cif | 29 + SiH2-3et-relax/abacus.err | 0 SiH2-3et-relax/abacus.out | 144 + SiH2-3et-relax/log | 302 ++ SiH2-3et-relax/relax.out | 7 + SiH2-3et-relax/relax.py | 71 + source/module_relax/CMakeLists.txt | 4 +- source/module_relax/mytest/bfgs.cpp | 397 +-- source/module_relax/mytest/bfgs.h | 6 +- source/module_relax/relax_driver.cpp | 6 +- .../relax_new/test/CMakeLists.txt | 11 +- .../module_relax/relax_new/test/bfgs_test.cpp | 70 + .../relax_old/test/CMakeLists.txt | 1 + tests/integrate/109_PW_CR/INPUT | 18 +- tests/integrate/109_PW_CR/KPT | 2 +- tests/integrate/109_PW_CR/STRU | 4 +- tests/integrate/109_PW_CR/log | 349 +++ tests/integrate/109_PW_CR/log1 | 182 ++ 25 files changed, 6119 insertions(+), 291 deletions(-) create mode 100644 SiH2-3et-relax/H.ccECP.upf create mode 100644 SiH2-3et-relax/INPUT create mode 100644 SiH2-3et-relax/KPT create mode 100644 SiH2-3et-relax/README.txt create mode 100644 SiH2-3et-relax/STRU create mode 100644 SiH2-3et-relax/Si.ccECP.upf create mode 100644 SiH2-3et-relax/SiH2-pos-fin.cif create mode 100644 SiH2-3et-relax/SiH2-pos-ini.cif create mode 100644 SiH2-3et-relax/abacus.err create mode 100644 SiH2-3et-relax/abacus.out create mode 100644 SiH2-3et-relax/log create mode 100644 SiH2-3et-relax/relax.out create mode 100644 SiH2-3et-relax/relax.py create mode 100644 source/module_relax/relax_new/test/bfgs_test.cpp create mode 100644 tests/integrate/109_PW_CR/log create mode 100644 tests/integrate/109_PW_CR/log1 diff --git a/SiH2-3et-relax/H.ccECP.upf b/SiH2-3et-relax/H.ccECP.upf new file mode 100644 index 0000000000..db2e441c8a --- /dev/null +++ b/SiH2-3et-relax/H.ccECP.upf @@ -0,0 +1,1995 @@ + + +############################################################ +# Opium Parameter File # +############################################################ +#----------------------------------------------------------- +#Command line : opium H H.log ae ps nl tc2 ke upf rpt + +#Opium version : 4.1 +#Compile Host : andes-login5.olcf.ornl.gov +#Compile OS : Linux 4.18.0-348.12.2.el8_5.x86_64 x86_64 +#Compile Date : Thu Jun 30 15:38:05 EDT 2022 +#----------------------------------------------------------- +#Execution Host : andes-login6.olcf.ornl.gov +#Execution Date : Thu Jun 30 16:20:54 2022 + +#----------------------------------------------------------- +############################################################ +[Atom] +H +3 +100 0.90 - +200 0.00 - +210 0.10 - + +[Pseudo] +3 1.0 1.0 1.0 +g + +[Gaussinfo] +1 2 +1 3 +2 1.000000000000000 0.00000000000000 +1 21.24359508259891 1.00000000000000 +3 21.24359508259891 21.24359508259891 +2 21.77696655044365 -10.85192405303825 + +[XC] +pbe + +[KBDesign] +s + +[Relativity] +nrl + +[Configs] +3 + +100 1.00 - +200 0.00 - +210 0.00 - + +100 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1.9998707416756774e-10 + 1.4609389254245402e-10 1.0628872853397577e-10 7.7009528088872000e-11 5.5562317117658189e-11 + 3.9918184672060758e-11 2.8555576112531019e-11 2.0338317055594087e-11 1.4421687582616761e-11 + 1.0180456783372275e-11 7.1541583781431851e-12 5.0045671896939624e-12 3.4847038242604998e-12 + 2.4150791700792631e-12 1.6658585198158649e-12 1.1435675739264962e-12 7.8123091518951002e-13 + 5.3109197097425851e-13 3.5926494009036304e-13 2.4182541129193156e-13 1.6196696149256291e-13 + 1.0794356048125600e-13 7.1588264495010355e-14 4.7252340945555612e-14 3.1049499680029856e-14 + 2.0320356986904506e-14 1.3255009193026994e-14 8.6284958894157819e-15 0.0000000000000000e+00 + diff --git a/SiH2-3et-relax/INPUT b/SiH2-3et-relax/INPUT new file mode 100644 index 0000000000..b623a245bd --- /dev/null +++ b/SiH2-3et-relax/INPUT @@ -0,0 +1,25 @@ +INPUT_PARAMETERS +# Created by Atomic Simulation Enviroment +suffix abacus +calculation relax +relax_nmax 50 +nspin 2 +nupdown 2 +symmetry 0 +dft_functional PBE +basis_type pw +ecutwfc 100 +scf_thr 1e-07 +scf_nmax 50 +gamma_only True +smearing_method gauss +smearing_sigma 0.01 +mixing_type broyden +mixing_beta 0.2 +mixing_beta_mag 0.8 +mixing_gg0 1.5 +mixing_gg0_mag 0 +ks_solver dav +cal_force 1 +ntype 2 +orbital_dir . diff --git a/SiH2-3et-relax/KPT b/SiH2-3et-relax/KPT new file mode 100644 index 0000000000..c289c0158a --- /dev/null +++ b/SiH2-3et-relax/KPT @@ -0,0 +1,4 @@ +K_POINTS +0 +Gamma +1 1 1 0 0 0 diff --git a/SiH2-3et-relax/README.txt b/SiH2-3et-relax/README.txt new file mode 100644 index 0000000000..8a3b7aa9e5 --- /dev/null +++ b/SiH2-3et-relax/README.txt @@ -0,0 +1,5 @@ +conda create -n ase-abacus python=3.10 +conda activate ase-abacus +git clone https://gitlab.com/1041176461/ase-abacus.git +cd ase-abacus +pip install . diff --git a/SiH2-3et-relax/STRU b/SiH2-3et-relax/STRU new file mode 100644 index 0000000000..8e4bda9d86 --- /dev/null +++ b/SiH2-3et-relax/STRU @@ -0,0 +1,30 @@ +ATOMIC_SPECIES +Si 28.085 Si.ccECP.upf +H 1.008 H.ccECP.upf + +NUMERICAL_ORBITAL +Si_gga_7au_100Ry_2s2p1d.orb +H_gga_6au_100Ry_2s1p.orb + +LATTICE_CONSTANT +1.8897261258369282 + +LATTICE_VECTORS +21.167088000 0.0000000000 0.0000000000 +0.0000000000 21.167088000 0.0000000000 +0.0000000000 0.0000000000 21.167088000 + +ATOMIC_POSITIONS +Direct + +Si +0.0000000000 +1 +0.5000000000 0.4999990000 0.5047030000 1 1 1 v 0.0 0.0 0.0 mag 0.0 + +H +0.0000000000 +2 +0.5000000000 0.5610460000 0.4685160000 1 1 1 v 0.0 0.0 0.0 mag 0.0 +0.5000000000 0.4389560000 0.4685160000 1 1 1 v 0.0 0.0 0.0 mag 0.0 + diff --git a/SiH2-3et-relax/Si.ccECP.upf b/SiH2-3et-relax/Si.ccECP.upf new file mode 100644 index 0000000000..a98483bada --- /dev/null +++ b/SiH2-3et-relax/Si.ccECP.upf @@ -0,0 +1,2720 @@ + + +############################################################ +# Opium Parameter File # +############################################################ +#----------------------------------------------------------- +#Command line : opium Si Si.log ae ps nl tc2 ke upf rpt + +#Opium version : 4.1 +#Compile Host : andes-login5.olcf.ornl.gov +#Compile OS : Linux 4.18.0-348.12.2.el8_5.x86_64 x86_64 +#Compile Date : Thu Jun 30 15:38:05 EDT 2022 +#----------------------------------------------------------- +#Execution Host : andes-login5.olcf.ornl.gov +#Execution Date : Thu Jun 30 16:16:16 2022 + +#----------------------------------------------------------- +############################################################ +[Atom] +Si +6 +100 2.00 - +200 2.00 - +210 6.00 - +300 2.00 - +310 1.00 - +320 1.00 - + +[KBDesign] +p + +[Pseudo] +3 2.384 2.680 1.887 +g + +[xc] +pbe + +[Gaussinfo] +4 3 +2 2 3 +2 9.447023 14.832760 +2 2.553812 26.349664 +2 3.660001 7.621400 +2 1.903653 10.331583 +1 5.168316 4.000000 +3 8.861690 20.673264 +2 3.933474 -14.818174 + +[Configs] +8 + +300 2.00 - +310 2.00 - +320 0.00 - + +300 2.00 - +310 1.00 - +320 1.00 - + +300 1.00 - +310 3.00 - +320 0.00 - + +300 1.00 - +310 2.00 - +320 1.00 - + +300 2.00 - +310 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3.1421999878203651e-21 1.6506387017508087e-21 0.0000000000000000e+00 + diff --git a/SiH2-3et-relax/SiH2-pos-fin.cif b/SiH2-3et-relax/SiH2-pos-fin.cif new file mode 100644 index 0000000000..dd5a88f83c --- /dev/null +++ b/SiH2-3et-relax/SiH2-pos-fin.cif @@ -0,0 +1,28 @@ +data_image0 +_chemical_formula_structural SiH2 +_chemical_formula_sum "Si1 H2" +_cell_length_a 21.16708843 +_cell_length_b 21.16708843 +_cell_length_c 21.16708843 +_cell_angle_alpha 90.0 +_cell_angle_beta 90.0 +_cell_angle_gamma 90.0 + +_space_group_name_H-M_alt "P 1" +_space_group_IT_number 1 + +loop_ + _space_group_symop_operation_xyz + 'x, y, z' + +loop_ + _atom_site_type_symbol + _atom_site_label + _atom_site_symmetry_multiplicity + _atom_site_fract_x + _atom_site_fract_y + _atom_site_fract_z + _atom_site_occupancy + Si Si1 1.0 0.49999992 0.49999894409649426 0.5047026224112832 1.0000 + H H1 1.0 0.5000000400000001 0.5610455426063221 0.46851619853432114 1.0000 + H H2 1.0 0.5000000400000001 0.4389555032963629 0.4685163190552164 1.0000 diff --git a/SiH2-3et-relax/SiH2-pos-ini.cif b/SiH2-3et-relax/SiH2-pos-ini.cif new file mode 100644 index 0000000000..aac6b5632c --- /dev/null +++ b/SiH2-3et-relax/SiH2-pos-ini.cif @@ -0,0 +1,29 @@ +# Generated by ABACUS ModuleIO::CifParser +data_? +_symmetry_space_group_name_H-M 'P 1' +_cell_length_a 21.16708843 +_cell_length_b 21.16708843 +_cell_length_c 21.16708843 +_cell_angle_alpha 90.00000000 +_cell_angle_beta 90.00000000 +_cell_angle_gamma 90.00000000 +_symmetry_Int_Tables_number 1 +_chemical_formula_structural SiH +_chemical_formula_sum SiH2 +_cell_volume 9483.82152169 +_cell_formula_units_Z 1 +loop_ + _symmetry_equiv_pos_site_id + _symmetry_equiv_pos_as_xyz + 1 'x, y, z' +loop_ + _atom_site_type_symbol + _atom_site_label + _atom_site_symmetry_multiplicity + _atom_site_fract_x + _atom_site_fract_y + _atom_site_fract_z + _atom_site_occupancy + Si Si0 1 0.49999992 0.49999980 0.50526114 1.0 + H H1 1 0.50000004 0.56098905 0.46823705 1.0 + H H2 1 0.50000004 0.43901114 0.46823695 1.0 diff --git a/SiH2-3et-relax/abacus.err b/SiH2-3et-relax/abacus.err new file mode 100644 index 0000000000..e69de29bb2 diff --git a/SiH2-3et-relax/abacus.out b/SiH2-3et-relax/abacus.out new file mode 100644 index 0000000000..fcd8a87cb9 --- /dev/null +++ b/SiH2-3et-relax/abacus.out @@ -0,0 +1,144 @@ + + ABACUS v3.8.1 + + Atomic-orbital Based Ab-initio Computation at UStc + + Website: http://abacus.ustc.edu.cn/ + Documentation: https://abacus.deepmodeling.com/ + Repository: https://github.com/abacusmodeling/abacus-develop + https://github.com/deepmodeling/abacus-develop + Commit: 146a50931 (Mon Oct 21 16:41:35 2024 +0800) + + Thu Oct 24 12:09:59 2024 + MAKE THE DIR : OUT.abacus/ + RUNNING WITH DEVICE : CPU / Intel(R) Xeon(R) Platinum + UNIFORM GRID DIM : 256 * 256 * 256 + UNIFORM GRID DIM(BIG) : 256 * 256 * 256 + DONE(0.28622 SEC) : SETUP UNITCELL + DONE(0.286508 SEC) : INIT K-POINTS + --------------------------------------------------------- + Self-consistent calculations for electrons + --------------------------------------------------------- + SPIN KPOINTS PROCESSORS + 2 2 16 + --------------------------------------------------------- + Use plane wave basis + --------------------------------------------------------- + ELEMENT NATOM XC + Si 1 + H 2 + --------------------------------------------------------- + Initial plane wave basis and FFT box + --------------------------------------------------------- + DONE(0.373599 SEC) : INIT PLANEWAVE + DONE(0.725854 SEC) : LOCAL POTENTIAL + DONE(0.825578 SEC) : NON-LOCAL POTENTIAL + MEMORY FOR PSI (MB) : 30.921 + DONE(0.914662 SEC) : INIT BASIS + ------------------------------------------- + SELF-CONSISTENT : + ------------------------------------------- + START CHARGE : atomic + DONE(3.68617 SEC) : INIT SCF + * * * * * * + << Start SCF iteration. + ITER TMAG AMAG ETOT/eV EDIFF/eV DRHO TIME/s + DS1 2.00e+00 2.03e+00 -1.34430231e+02 0.00000000e+00 3.9191e-01 14.62 + DS2 2.00e+00 2.02e+00 -1.34775372e+02 -3.45141827e-01 9.7737e-02 10.50 + DS3 2.00e+00 2.02e+00 -1.35111314e+02 -3.35941751e-01 6.5112e-03 15.38 + DS4 2.00e+00 2.02e+00 -1.35170475e+02 -5.91607382e-02 1.5503e-03 26.84 + DS5 2.00e+00 2.02e+00 -1.35186232e+02 -1.57568707e-02 1.7038e-04 20.76 + DS6 2.00e+00 2.02e+00 -1.35188302e+02 -2.07018353e-03 1.5779e-05 26.53 + DS7 2.00e+00 2.02e+00 -1.35188101e+02 2.01251562e-04 5.6585e-06 13.65 + DS8 2.00e+00 2.02e+00 -1.35188148e+02 -4.72056440e-05 2.2478e-07 14.42 + DS9 2.00e+00 2.02e+00 -1.35188152e+02 -4.09432453e-06 7.8883e-08 12.36 + DS10 2.00e+00 2.02e+00 -1.35188153e+02 -1.47620397e-06 4.3864e-09 9.45 + >> Leave SCF iteration. + * * * * * * +TIME STATISTICS +----------------------------------------------------------------------------- + CLASS_NAME NAME TIME/s CALLS AVG/s PER/% +----------------------------------------------------------------------------- + total 170.93 15 11.40 100.00 + Driver reading 0.02 1 0.02 0.01 + Input_Conv Convert 0.00 1 0.00 0.00 + Driver driver_line 170.91 1 170.91 99.99 + UnitCell check_tau 0.00 1 0.00 0.00 + PW_Basis_Sup setuptransform 0.06 1 0.06 0.03 + PW_Basis_Sup distributeg 0.05 1 0.05 0.03 + mymath heapsort 0.10 3 0.03 0.06 + PW_Basis_K setuptransform 0.04 1 0.04 0.03 + PW_Basis_K distributeg 0.04 1 0.04 0.02 + PW_Basis setup_struc_factor 0.06 1 0.06 0.03 + ppcell_vnl init 0.01 1 0.01 0.01 + ppcell_vl init_vloc 0.21 1 0.21 0.12 + ppcell_vnl init_vnl 0.10 1 0.10 0.06 + WF_atomic init_at_1 0.09 1 0.09 0.05 + wavefunc wfcinit 0.00 1 0.00 0.00 + Ions opt_ions 169.89 1 169.89 99.39 + ESolver_KS_PW runner 169.22 1 169.22 99.00 + ESolver_KS_PW before_scf 2.77 1 2.77 1.62 + H_Ewald_pw compute_ewald 0.02 1 0.02 0.01 + Charge set_rho_core 0.00 1 0.00 0.00 + Charge atomic_rho 1.18 2 0.59 0.69 + PW_Basis_Sup recip2real 9.56 122 0.08 5.59 + PW_Basis_Sup gathers_scatterp 4.46 122 0.04 2.61 + Potential init_pot 2.27 1 2.27 1.33 + Potential update_from_charge 23.35 11 2.12 13.66 + Potential cal_fixed_v 0.09 1 0.09 0.05 + PotLocal cal_fixed_v 0.09 1 0.09 0.05 + Potential cal_v_eff 23.18 11 2.11 13.56 + H_Hartree_pw v_hartree 2.15 11 0.20 1.26 + PW_Basis_Sup real2recip 11.37 154 0.07 6.65 + PW_Basis_Sup gatherp_scatters 5.94 154 0.04 3.48 + PotXC cal_v_eff 20.80 11 1.89 12.17 + XC_Functional v_xc 20.70 11 1.88 12.11 + Potential interpolate_vrs 0.08 11 0.01 0.05 + Charge_Mixing init_mixing 0.00 1 0.00 0.00 + ESolver_KS_PW hamilt2density 136.57 10 13.66 79.90 + HSolverPW solve 136.42 10 13.64 79.81 + Nonlocal getvnl 0.47 20 0.02 0.28 + pp_cell_vnl getvnl 0.47 20 0.02 0.28 + Structure_Factor get_sk 0.07 28 0.00 0.04 + WF_atomic atomic_wfc 0.08 2 0.04 0.05 + Diago_DavSubspace diag_once 122.67 20 6.13 71.76 + Diago_DavSubspace first 24.52 20 1.23 14.34 + DavSubspace hpsi_func 110.08 186 0.59 64.40 + Operator hPsi 109.69 186 0.59 64.17 + Operator EkineticPW 0.87 186 0.00 0.51 + Operator VeffPW 106.68 186 0.57 62.41 + PW_Basis_K recip2real 61.85 1675 0.04 36.19 + PW_Basis_K gathers_scatterp 21.52 1675 0.01 12.59 + PW_Basis_K real2recip 45.62 1375 0.03 26.69 + PW_Basis_K gatherp_scatters 12.75 1375 0.01 7.46 + Operator NonlocalPW 2.14 186 0.01 1.25 + Nonlocal add_nonlocal_pp 1.19 186 0.01 0.70 + Diago_DavSubspace cal_elem 3.69 186 0.02 2.16 + Diago_DavSubspace diag_zhegvx 0.13 186 0.00 0.08 + Diago_DavSubspace cal_grad 93.08 166 0.56 54.46 + Diago_DavSubspace check_update 0.00 166 0.00 0.00 + Diago_DavSubspace last 1.52 34 0.04 0.89 + Diago_DavSubspace refresh 0.48 14 0.03 0.28 + ElecStatePW psiToRho 12.04 10 1.20 7.04 + Charge_Mixing get_drho 2.91 10 0.29 1.70 + Charge_Mixing inner_product_recip_rho 0.09 10 0.01 0.05 + Charge mix_rho 3.61 9 0.40 2.11 + Charge Broyden_mixing 0.58 9 0.06 0.34 + Charge_Mixing inner_product_recip_hartree 0.48 72 0.01 0.28 + ESolver_KS_PW after_scf 1.94 1 1.94 1.14 + ModuleIO write_rhog 1.06 1 1.06 0.62 + Forces cal_force_loc 0.12 1 0.12 0.07 + Forces cal_force_ew 0.05 1 0.05 0.03 + Forces cal_force_nl 0.12 1 0.12 0.07 + FS_Nonlocal_tools cal_becp 0.06 2 0.03 0.04 + FS_Nonlocal_tools cal_dbecp_f 0.06 6 0.01 0.03 + Forces cal_force_cc 0.00 1 0.00 0.00 + Forces cal_force_scc 0.38 1 0.38 0.22 + ModuleIO write_istate_info 0.00 1 0.00 0.00 +----------------------------------------------------------------------------- + + + START Time : Thu Oct 24 12:09:59 2024 + FINISH Time : Thu Oct 24 12:12:50 2024 + TOTAL Time : 171 + SEE INFORMATION IN : OUT.abacus/ diff --git a/SiH2-3et-relax/log b/SiH2-3et-relax/log new file mode 100644 index 0000000000..6913ff84e3 --- /dev/null +++ b/SiH2-3et-relax/log @@ -0,0 +1,302 @@ + + ABACUS v3.8.2 + + Atomic-orbital Based Ab-initio Computation at UStc + + Website: http://abacus.ustc.edu.cn/ + Documentation: https://abacus.deepmodeling.com/ + Repository: https://github.com/abacusmodeling/abacus-develop + https://github.com/deepmodeling/abacus-develop + Commit: unknown + + Thu Nov 14 10:21:09 2024 + MAKE THE DIR : OUT.abacus/ + RUNNING WITH DEVICE : CPU / 13th Gen Intel(R) Core(TM) i7-13700KF + UNIFORM GRID DIM : 256 * 256 * 256 + UNIFORM GRID DIM(BIG) : 256 * 256 * 256 + DONE(2.28839 SEC) : SETUP UNITCELL + DONE(2.62179 SEC) : INIT K-POINTS + --------------------------------------------------------- + Ion relaxation calculations + --------------------------------------------------------- + SPIN KPOINTS PROCESSORS THREADS + 2 2 8 8 + --------------------------------------------------------- + Use plane wave basis + --------------------------------------------------------- + ELEMENT NATOM XC + Si 1 + H 2 + --------------------------------------------------------- + Initial plane wave basis and FFT box + --------------------------------------------------------- + DONE(3.50903 SEC) : INIT PLANEWAVE + DONE(4.89165 SEC) : LOCAL POTENTIAL + DONE(6.02286 SEC) : NON-LOCAL POTENTIAL + MEMORY FOR PSI (MB) : 61.8411 + DONE(6.33916 SEC) : INIT BASIS + ------------------------------------------- + STEP OF RELAXATION : 1 + ------------------------------------------- + START CHARGE : atomic + DONE(27.8766 SEC) : INIT SCF + * * * * * * + << Start SCF iteration. + ITER TMAG AMAG ETOT/eV EDIFF/eV DRHO TIME/s + DA1 2.00e+00 2.03e+00 -1.36488047e+02 0.00000000e+00 3.9185e-01 76.67 + DA2 2.00e+00 2.03e+00 -1.35639323e+02 8.48724853e-01 2.9515e-01 51.87 + DA3 2.00e+00 2.03e+00 -1.35175018e+02 4.64304219e-01 1.2141e-01 54.57 + DA4 2.00e+00 2.03e+00 -1.35231536e+02 -5.65178630e-02 2.5339e-02 78.37 + DA5 2.00e+00 2.02e+00 -1.35222711e+02 8.82512136e-03 1.0236e-02 96.69 + DA6 2.00e+00 2.02e+00 -1.35217865e+02 4.84660755e-03 3.1181e-03 94.22 + DA7 2.00e+00 2.02e+00 -1.35217872e+02 -7.33928889e-06 5.5952e-04 120.35 + DA8 2.00e+00 2.02e+00 -1.35201171e+02 1.67013151e-02 3.9924e-04 90.35 + DA9 2.00e+00 2.02e+00 -1.35194998e+02 6.17261755e-03 4.3632e-05 84.00 + DA10 2.00e+00 2.02e+00 -1.35193314e+02 1.68393041e-03 2.5192e-05 155.27 + DA11 2.00e+00 2.02e+00 -1.35189848e+02 3.46604543e-03 8.9616e-06 102.29 + DA12 2.00e+00 2.02e+00 -1.35189045e+02 8.02713411e-04 1.7975e-06 180.97 + DA13 2.00e+00 2.02e+00 -1.35188238e+02 8.07283414e-04 8.9097e-07 183.71 + DA14 2.00e+00 2.02e+00 -1.35188208e+02 3.00653633e-05 3.6123e-07 224.56 + DA15 2.00e+00 2.02e+00 -1.35188171e+02 3.68581656e-05 1.0798e-07 248.12 + DA16 2.00e+00 2.02e+00 -1.35188152e+02 1.86521458e-05 7.5997e-08 187.18 + >> Leave SCF iteration. + * * * * * * +-8.05175e-06 0.00101372 -0.00623495 +3.5651e-06 -0.00141872 0.00342649 +4.48665e-06 0.000404995 0.00280847 +enter Step +70 0 0 0 0 0 0 0 0 +0 70 0 0 0 0 0 0 0 +0 0 70 0 0 0 0 0 0 +0 0 0 70 0 0 0 0 0 +0 0 0 0 70 0 0 0 0 +0 0 0 0 0 70 0 0 0 +0 0 0 0 0 0 70 0 0 +0 0 0 0 0 0 0 70 0 +0 0 0 0 0 0 0 0 70 +70 70 70 70 70 70 70 70 70 +-1.15025e-07 1.44817e-05 -8.90708e-05 +5.093e-08 -2.02674e-05 4.89498e-05 +6.4095e-08 5.78564e-06 4.0121e-05 +8.90708e-05 + ------------------------------------------- + STEP OF RELAXATION : 2 + ------------------------------------------- + DONE(2096.43 SEC) : INIT SCF + * * * * * * + << Start SCF iteration. + ITER TMAG AMAG ETOT/eV EDIFF/eV DRHO TIME/s + DA1 2.00e+00 2.02e+00 -1.35188153e+02 0.00000000e+00 5.6291e-09 404.41 + >> Leave SCF iteration. + * * * * * * +4.346e-05 -0.00564167 0.037308 +-2.19474e-05 0.00350779 -0.0186002 +-2.15126e-05 0.00213388 -0.0187077 +enter Step +PrintPos +57.1818 57.1817 57.7196 57.1818 64.1632 53.5812 57.1818 50.2006 53.5812 +PrintPos0 +57.1818 57.1817 57.7197 57.1818 64.1632 53.5812 57.1818 50.2006 53.5812 +70.0004 -0.0478214 0.316501 -0.000186247 0.0292943 -0.157617 -0.000182005 0.0185271 -0.158884 +-0.0478214 76.2092 -41.0803 0.0241709 -3.82764 20.4677 0.0236505 -2.38151 20.6127 +0.316501 -41.0803 341.579 -0.159745 25.6818 -135.454 -0.156756 15.3985 -136.124 +-0.000186247 0.0241709 -0.159745 70.0001 -0.0151891 0.079707 9.22939e-05 -0.00898178 0.0800378 +0.0292943 -3.82764 25.6818 -0.0151891 71.7577 -12.553 -0.0141053 2.06991 -13.1288 +-0.157617 20.4677 -135.454 0.079707 -12.553 137.462 0.0779103 -7.91471 67.9921 +-0.000182005 0.0236505 -0.156756 9.22939e-05 -0.0141053 0.0779103 70.0001 -0.00954528 0.0788458 +0.0185271 -2.38151 15.3985 -0.00898178 2.06991 -7.91471 -0.00954528 70.3116 -7.48382 +-0.158884 20.6127 -136.124 0.0800378 -13.1288 67.9921 0.0788458 -7.48382 138.132 +68.5683 70 70 70 70 70 70 70 486.884 +8.92294e-08 -1.15913e-05 7.6773e-05 +-4.51902e-08 7.00377e-06 -3.81939e-05 +-4.40392e-08 4.58748e-06 -3.85791e-05 +7.6773e-05 + ------------------------------------------- + STEP OF RELAXATION : 3 + ------------------------------------------- + DONE(2541.1 SEC) : INIT SCF + * * * * * * + << Start SCF iteration. + ITER TMAG AMAG ETOT/eV EDIFF/eV DRHO TIME/s + DA1 2.00e+00 2.02e+00 -1.35188153e+02 0.00000000e+00 3.1198e-08 270.52 + >> Leave SCF iteration. + * * * * * * +-7.55964e-05 0.00828095 -0.0458129 +3.46492e-05 -0.00463487 0.0232526 +4.09472e-05 -0.00364608 0.0225603 +enter Step +PrintPos +57.1818 57.1817 57.7196 57.1818 64.1632 53.5812 57.1818 50.2006 53.5812 +PrintPos0 +57.1818 57.1817 57.7196 57.1818 64.1632 53.5812 57.1818 50.2006 53.5812 +70.0014 -0.160795 0.955062 -0.000655262 0.0933054 -0.480977 -0.000726434 0.0674893 -0.474086 +-0.160795 88.7012 -110.999 0.0762203 -10.866 55.9107 0.0845744 -7.83519 55.088 +0.955062 -110.999 728.176 -0.452355 64.8039 -331.686 -0.502708 46.1947 -326.49 +-0.000655262 0.0762203 -0.452355 70.0003 -0.0445892 0.227967 0.00034479 -0.0316311 0.224388 +0.0933054 -10.866 64.8039 -0.0445892 75.7078 -32.3996 -0.0487162 5.15827 -32.4044 +-0.480977 55.9107 -331.686 0.227967 -32.3996 237.053 0.25301 -23.5111 164.634 +-0.000726434 0.0845744 -0.502708 0.00034479 -0.0487162 0.25301 70.0004 -0.0358582 0.249698 +0.0674893 -7.83519 46.1947 -0.0316311 5.15827 -23.5111 -0.0358582 72.6769 -22.6836 +-0.474086 55.088 -326.49 0.224388 -32.4044 164.634 0.249698 -22.6836 231.857 +68.5689 69.9771 70 70 70 70 70 70 1085.63 +-1.91712e-07 1.49606e-05 -4.10153e-05 +7.40346e-08 -5.85004e-06 2.30705e-05 +1.17677e-07 -9.11058e-06 1.79448e-05 +4.10153e-05 + ------------------------------------------- + STEP OF RELAXATION : 4 + ------------------------------------------- + DONE(2853.63 SEC) : INIT SCF + * * * * * * + << Start SCF iteration. + ITER TMAG AMAG ETOT/eV EDIFF/eV DRHO TIME/s + DA1 2.00e+00 2.02e+00 -1.35188167e+02 0.00000000e+00 1.0081e-07 215.90 + DA2 2.00e+00 2.02e+00 -1.35188153e+02 1.40177011e-05 6.6664e-08 166.44 + >> Leave SCF iteration. + * * * * * * +8.1769e-05 -0.00808511 0.0353854 +-4.52046e-05 0.00330727 -0.0177616 +-3.65644e-05 0.00477784 -0.0176237 +enter Step +PrintPos +57.1818 57.1817 57.7196 57.1818 64.1632 53.5812 57.1818 50.2006 53.5812 +PrintPos0 +57.1818 57.1817 57.7196 57.1818 64.1632 53.5812 57.1818 50.2006 53.5812 +70.0041 -0.431782 2.18127 -0.00212244 0.209315 -1.09747 -0.00196515 0.222468 -1.0838 +-0.431782 115.743 -232.216 0.22403 -22.2925 116.824 0.207752 -23.4501 115.393 +2.18127 -232.216 1258.03 -1.13151 114.253 -597.578 -1.04976 117.963 -590.452 +-0.00212244 0.22403 -1.13151 70.0011 -0.109219 0.569697 0.00102435 -0.114811 0.561815 +0.209315 -22.2925 114.253 -0.109219 80.3039 -57.2004 -0.100096 11.9886 -57.0526 +-1.09747 116.824 -597.578 0.569697 -57.2004 370.473 0.52777 -59.6232 297.105 +-0.00196515 0.207752 -1.04976 0.00102435 -0.100096 0.52777 70.0009 -0.107656 0.521988 +0.222468 -23.4501 117.963 -0.114811 11.9886 -59.6232 -0.107656 81.4615 -58.3399 +-1.0838 115.393 -590.452 0.561815 -57.0526 297.105 0.521988 -58.3399 363.347 +68.569 69.9902 70 70 70 70 70 70.622 1920.18 +2.67183e-07 -1.96448e-05 1.53941e-05 +-1.79128e-07 -6.74984e-08 -7.11369e-06 +-8.80554e-08 1.97123e-05 -8.28041e-06 +1.97123e-05 + ------------------------------------------- + STEP OF RELAXATION : 5 + ------------------------------------------- + DONE(3276.17 SEC) : INIT SCF + * * * * * * + << Start SCF iteration. + ITER TMAG AMAG ETOT/eV EDIFF/eV DRHO TIME/s + DA1 2.00e+00 2.02e+00 -1.35188154e+02 0.00000000e+00 3.3042e-07 207.81 + DA2 2.00e+00 2.02e+00 -1.35188152e+02 1.83347409e-06 2.1780e-07 162.27 + DA3 2.00e+00 2.02e+00 -1.35188154e+02 -1.38831167e-06 7.6354e-09 232.57 + >> Leave SCF iteration. + * * * * * * +-4.19663e-05 0.0016335 -0.00512881 +1.20812e-05 -0.00112867 0.00305417 +2.9885e-05 -0.000504829 0.00207464 +enter Step +PrintPos +57.1818 57.1817 57.7196 57.1818 64.1632 53.5812 57.1818 50.2006 53.5812 +PrintPos0 +57.1818 57.1817 57.7196 57.1818 64.1632 53.5812 57.1818 50.2006 53.5812 +70.0103 -0.790066 3.54958 -0.00441812 0.402564 -1.83262 -0.00585047 0.387502 -1.71696 +-0.790066 131.313 -284.743 0.333973 -32.3361 146.986 0.456093 -28.9768 137.756 +3.54958 -284.743 1422.88 -1.52052 151.064 -696.154 -2.02905 133.678 -656.726 +-0.00441812 0.333973 -1.52052 70.0018 -0.17584 0.787341 0.0025703 -0.158133 0.733183 +0.402564 -32.3361 151.064 -0.17584 86.0878 -77.4107 -0.226723 16.2483 -73.6537 +-1.83262 146.986 -696.154 0.787341 -77.4107 428.086 1.04527 -69.5757 338.068 +-0.00585047 0.456093 -2.02905 0.0025703 -0.226723 1.04527 70.0033 -0.229369 0.983777 +0.387502 -28.9768 133.678 -0.158133 16.2483 -69.5757 -0.229369 82.7285 -64.1027 +-1.71696 137.756 -656.726 0.733183 -73.6537 338.068 0.983777 -64.1027 388.657 +67.4914 69.9519 70 70 70 70 70 72.3168 2190.01 +-4.05658e-07 7.80182e-06 -7.06677e-07 +8.84578e-08 -8.1604e-06 6.34466e-06 +3.172e-07 3.58581e-07 -5.63799e-06 +8.1604e-06 +TIME STATISTICS +------------------------------------------------------------------------------- + CLASS_NAME NAME TIME/s CALLS AVG/s PER/% +------------------------------------------------------------------------------- + total 3895.73 23 169.38 100.00 + Driver reading 0.01 1 0.01 0.00 + Input_Conv Convert 0.00 1 0.00 0.00 + Driver driver_line 3895.72 1 3895.72 100.00 + UnitCell check_tau 0.00 1 0.00 0.00 + PW_Basis_Sup setuptransform 0.64 1 0.64 0.02 + PW_Basis_Sup distributeg 0.64 1 0.64 0.02 + mymath heapsort 0.32 3 0.11 0.01 + PW_Basis_K setuptransform 0.68 1 0.68 0.02 + PW_Basis_K distributeg 0.63 1 0.63 0.02 + PW_Basis setup_struc_factor 2.19 5 0.44 0.06 + ppcell_vnl init 0.05 1 0.05 0.00 + ppcell_vl init_vloc 0.57 1 0.57 0.01 + ppcell_vnl init_vnl 1.13 1 1.13 0.03 + WF_atomic init_at_1 0.32 1 0.32 0.01 + wavefunc wfcinit 0.00 1 0.00 0.00 + Ions opt_ions 3889.31 1 3889.31 99.84 + ESolver_KS_PW runner 3862.70 5 772.54 99.15 + ESolver_KS_PW before_scf 111.05 5 22.21 2.85 + H_Ewald_pw compute_ewald 2.20 5 0.44 0.06 + Charge set_rho_core 0.07 5 0.01 0.00 + Charge atomic_rho 56.93 10 5.69 1.46 + PW_Basis_Sup recip2real 169.19 313 0.54 4.34 + PW_Basis_Sup gathers_scatterp 56.69 313 0.18 1.46 + Potential init_pot 75.70 5 15.14 1.94 + Potential update_from_charge 394.32 28 14.08 10.12 + Potential cal_fixed_v 3.91 5 0.78 0.10 + PotLocal cal_fixed_v 3.85 5 0.77 0.10 + Potential cal_v_eff 390.24 28 13.94 10.02 + H_Hartree_pw v_hartree 46.12 28 1.65 1.18 + PW_Basis_Sup real2recip 179.08 408 0.44 4.60 + PW_Basis_Sup gatherp_scatters 59.99 408 0.15 1.54 + PotXC cal_v_eff 342.39 28 12.23 8.79 + XC_Functional v_xc 341.57 28 12.20 8.77 + Potential interpolate_vrs 0.17 28 0.01 0.00 + Charge_Mixing init_mixing 0.02 5 0.00 0.00 + ESolver_KS_PW hamilt2density_single 3210.74 27 118.92 82.42 + HSolverPW solve 3202.62 27 118.62 82.21 + Nonlocal getvnl 10.23 54 0.19 0.26 + pp_cell_vnl getvnl 10.23 54 0.19 0.26 + Structure_Factor get_sk 2.81 70 0.04 0.07 + WF_atomic atomic_wfc 1.02 2 0.51 0.03 + DiagoDavid diag_once 3016.49 54 55.86 77.43 + DiagoDavid first 315.67 54 5.85 8.10 + David spsi_func 5.20 14000 0.00 0.13 + DiagoDavid SchmidtOrth 207.52 7000 0.03 5.33 + David hpsi_func 2630.33 1127 2.33 67.52 + Operator hPsi 2630.32 1127 2.33 67.52 + Operator EkineticPW 18.58 1127 0.02 0.48 + Operator VeffPW 2584.70 1127 2.29 66.35 + PW_Basis_K recip2real 1183.36 7810 0.15 30.38 + PW_Basis_K gathers_scatterp 338.16 7810 0.04 8.68 + PW_Basis_K real2recip 1434.52 7000 0.20 36.82 + PW_Basis_K gatherp_scatters 698.34 7000 0.10 17.93 + Operator NonlocalPW 27.03 1127 0.02 0.69 + Nonlocal add_nonlocal_pp 11.71 1127 0.01 0.30 + DiagoDavid cal_elem 41.08 1127 0.04 1.05 + DiagoDavid diag_zhegvx 0.37 1127 0.00 0.01 + DiagoDavid cal_grad 2621.03 1073 2.44 67.28 + DiagoDavid check_update 0.01 1073 0.00 0.00 + DiagoDavid last 40.22 175 0.23 1.03 + ElecStatePW psiToRho 165.67 27 6.14 4.25 + Charge_Mixing get_drho 60.73 27 2.25 1.56 + Charge_Mixing inner_product_recip_rho 12.41 27 0.46 0.32 + Charge mix_rho 84.84 18 4.71 2.18 + Charge Broyden_mixing 43.29 18 2.40 1.11 + Charge_Mixing inner_product_recip_hartree 42.89 170 0.25 1.10 + DiagoDavid refresh 26.35 121 0.22 0.68 + ESolver_KS_PW after_scf 62.52 5 12.50 1.60 + ModuleIO write_rhog 28.65 5 5.73 0.74 + Forces cal_force_loc 5.41 5 1.08 0.14 + Forces cal_force_ew 4.65 5 0.93 0.12 + Forces cal_force_nl 5.73 5 1.15 0.15 + FS_Nonlocal_tools cal_becp 2.58 10 0.26 0.07 + FS_Nonlocal_tools cal_dbecp_f 2.82 30 0.09 0.07 + Forces cal_force_cc 0.00 5 0.00 0.00 + Forces cal_force_scc 10.77 5 2.15 0.28 + Charge_Extra extrapolate_charge 26.78 4 6.69 0.69 + ModuleIO write_istate_info 0.00 1 0.00 0.00 +------------------------------------------------------------------------------- + + + START Time : Thu Nov 14 10:21:09 2024 + FINISH Time : Thu Nov 14 11:26:05 2024 + TOTAL Time : 3896 + SEE INFORMATION IN : OUT.abacus/ diff --git a/SiH2-3et-relax/relax.out b/SiH2-3et-relax/relax.out new file mode 100644 index 0000000000..7a105d810a --- /dev/null +++ b/SiH2-3et-relax/relax.out @@ -0,0 +1,7 @@ + Step Time Energy fmax +BFGS: 0 12:01:24 -135.186543 0.192194 +BFGS: 1 12:04:16 -135.187369 0.131104 +BFGS: 2 12:07:10 -135.188012 0.025128 +BFGS: 3 12:09:58 -135.188032 0.023977 +BFGS: 4 12:12:50 -135.188153 0.001422 +Final structure is saved in SiH2-pos-fin.cif diff --git a/SiH2-3et-relax/relax.py b/SiH2-3et-relax/relax.py new file mode 100644 index 0000000000..ce37d857cc --- /dev/null +++ b/SiH2-3et-relax/relax.py @@ -0,0 +1,71 @@ +from ase.calculators.abacus import Abacus +from ase.calculators.abacus import AbacusProfile +from ase.io import read, write + +def abacus_init(fname, profile, **kwargs): + '''instantiate a instance of Abacus calculator (and bind) with + specific structures and ABACUS parameters + + Parameters + ---------- + fname : str + The filename of the structure, can be any format that ASE supports. + For a complete list of supported formats, see: + https://wiki.fysik.dtu.dk/ase/ase/io/io.html#module-ase.io + profile : AbacusProfile + The command to run ABACUS + **kwargs : dict + The ABACUS parameters, e.g. pp, basis, etc. + + Returns + ------- + a : Atoms + The Atoms object with the attached ABACUS calculator + ''' + a = read(fname) + pp = kwargs.pop('pp', {}) + # if there is no data in pp, pops an warning + if not pp: + print('WARNING: No pseudopotential data is provided') + a.calc = Abacus(pp=pp, profile=profile, **kwargs) + return a + +def relax(a, method='BFGS', fmax=0.05, max_steps=100, **kwargs): + '''relax the structure using the given method''' + if method == 'BFGS': + from ase.optimize import BFGS + dyn = BFGS(a, trajectory=None, **kwargs) + dyn.run(fmax=fmax, steps=max_steps) + else: + raise NotImplementedError(f'{method} is not supported by ASE') + return a + +if __name__ == '__main__': + pp={'Si': 'Si.ccECP.upf', 'H': 'H.ccECP.upf'} + env = AbacusProfile('mpirun -np 16 /usr/local/bin/abacus') + recipe = {'suffix': 'abacus', + 'pseudo_dir': '.', + 'orbital_dir': '.', + 'nspin': 2, + 'nupdown': 2, + 'symmetry': 0, + 'dft_functional': 'PBE', + 'ecutwfc': 100, + 'scf_thr': 1e-8, + 'scf_nmax': 50, + 'basis_type': 'pw', + 'gamma_only': True, + 'smearing_method': 'fixed', + 'mixing_type': 'broyden', + 'mixing_beta': 0.4, + 'mixing_beta_mag': 0.4, + 'mixing_gg0': 0, + 'mixing_gg0_mag': 0, + 'ks_solver': 'dav_subspace', + 'out_chg': -1} + ini = 'SiH2-pos-ini.cif' + fin = 'SiH2-pos-fin.cif' + a = abacus_init(ini, profile=env, pp=pp, **recipe) + a = relax(a, fmax=0.01, max_steps=100) + write(fin, a) + print(f'Final structure is saved in {fin}') \ No newline at end of file diff --git a/source/module_relax/CMakeLists.txt b/source/module_relax/CMakeLists.txt index 5fecc6e6ed..50552d5f89 100644 --- a/source/module_relax/CMakeLists.txt +++ b/source/module_relax/CMakeLists.txt @@ -17,6 +17,7 @@ add_library( relax_old/lattice_change_basic.cpp relax_old/lattice_change_cg.cpp relax_old/lattice_change_methods.cpp + mytest/bfgs.cpp ) if(ENABLE_COVERAGE) @@ -27,5 +28,6 @@ if(BUILD_TESTING) if(ENABLE_MPI) add_subdirectory(relax_new/test) add_subdirectory(relax_old/test) - endif() + endif() + endif() diff --git a/source/module_relax/mytest/bfgs.cpp b/source/module_relax/mytest/bfgs.cpp index 2660ae8106..1198293a79 100644 --- a/source/module_relax/mytest/bfgs.cpp +++ b/source/module_relax/mytest/bfgs.cpp @@ -1,8 +1,9 @@ #include "bfgs.h" -#include "module_base/matrix3.h" #include "module_hamilt_pw/hamilt_pwdft/global.h" +#include "module_base/matrix3.h" -void bfgs::initialize(int _size) // 初始化H0、H、pos0、force0、force + +void bfgs::initialize(int _size) // initialize H0、H、pos0、force0、force { alpha=70;//relax_scale_force maxstep=100; //relax_nmax @@ -13,256 +14,67 @@ void bfgs::initialize(int _size) // 初始化H0、H、pos0、force0、force H[i][i] = alpha; } - pos = std::vector> (size, std::vector(3, 0.0)); - - - pos[0][0]=0; - pos[0][1]=0; - pos[0][2]=0; - pos[1][0]=1.6208698; - pos[1][1]=1.18863785; - pos[1][2]=1.45878282; - - + pos = std::vector> (size, std::vector(3, 0.0)); pos0 = std::vector(3*size, 0.0); dpos = std::vector>(size, std::vector(3, 0.0)); force0 = std::vector(3*size, 0.0); force = std::vector>(size, std::vector(3, 0.0)); steplength = std::vector(size, 0.0); + GetPos(); + } -bool bfgs::Step(std::vector> _force) // 正式开始每一步迭代 +bool bfgs::Step(std::vector> _force,UnitCell& ucell) { std::cout<<"enter Step"< move_ion_cart; - move_ion_cart.x = dpos[iat][0] / ModuleBase::BOHR_TO_A / GlobalC::ucell.lat0; - move_ion_cart.y = dpos[iat][1] / ModuleBase::BOHR_TO_A / GlobalC::ucell.lat0; - move_ion_cart.z = dpos[iat][2] / ModuleBase::BOHR_TO_A / GlobalC::ucell.lat0; - /*GlobalC::ucell.atoms[0].tau[iat].x+=move_ion_cart.x; - GlobalC::ucell.atoms[0].tau[iat].y+=move_ion_cart.y; - GlobalC::ucell.atoms[0].tau[iat].z+=move_ion_cart.z;*/ - - - - - /*move_ion_cart.x = dpos[iat][0] ; - move_ion_cart.y = dpos[iat][1] ; - move_ion_cart.z = dpos[iat][2] ;*/ - /*std::cout<<"move_ion_cart"< move_ion_dr = move_ion_cart * GlobalC::ucell.GT; - /*std::cout<<"move_ion_dr"<mbl[ia].x == 1) - { - move_ion[iat * 3] = move_ion_dr.x; - } - if(atom->mbl[ia].y == 1) - { - move_ion[iat * 3 + 1] = move_ion_dr.y ; - } - if(atom->mbl[ia].z == 1) - { - move_ion[iat * 3 + 2] = move_ion_dr.z ; - } - } - /*std::cout<<"move_ion"<0) - { - w=dpos[i][j]; - } - else - { - w=-dpos[i][j]; - } - if(w>a) - { - a=w; - } + pos[k+j][0]=GlobalC::ucell.atoms[i].tau[j].x*ModuleBase::BOHR_TO_A*GlobalC::ucell.lat0; + pos[k+j][1]=GlobalC::ucell.atoms[i].tau[j].y*ModuleBase::BOHR_TO_A*GlobalC::ucell.lat0; + pos[k+j][2]=GlobalC::ucell.atoms[i].tau[j].z*ModuleBase::BOHR_TO_A*GlobalC::ucell.lat0; } + k+=GlobalC::ucell.atoms[i].na; } - std::cout< changedforce = ReshapeMToV(force); std::vector changedpos = ReshapeMToV(pos); - - ///输出changedforce和changedpos - std::cout<<"PrintChangedforce"< omega(3*size); std::vector work(3*size*3*size); int lwork=3*size*3*size; @@ -275,10 +87,6 @@ void bfgs::PrepareStep() int value=3*size; int* ptr=&value; dsyev_("V","U",ptr,H_flat.data(),ptr,omega.data(),work.data(),&lwork,&info); - - - //输出V,omega - std::vector> V(3*size, std::vector(3*size, 0.0)); for(int i = 0; i < 3*size; i++) { @@ -288,60 +96,20 @@ void bfgs::PrepareStep() } } - std::cout<<"PrintV"< a=DotInMAndV2(V, changedforce); - - - - std::cout<<"Printa"< tmpdpos = DotInMAndV1(V, a); - //输出tmpdpos - std::cout<<"PrintTmpdpos"< pos, std::vector force) sign=false; return; } - //pos0={0,0,0,1.6208698,1.18863785,1.45878282}; + /*std::cout<<"PrintPos"< dpos = VSubV(pos, pos0); if(*max_element(dpos.begin(), dpos.end()) < 1e-7) { return; } - //force0={3.94885101,-2.46796196,3.5609503,-3.82079544,2.33869184,-3.43330592}; std::vector dforce = VSubV(force, force0); double a = DotInVAndV(dpos, dforce); std::vector dg = DotInMAndV1(H, dpos); @@ -395,9 +173,78 @@ void bfgs::DetermineStep() } } -// 矩阵方法 +void bfgs::UpdatePos() +{ + double move_ion[3*size]; + ModuleBase::zeros(move_ion, size*3); + + for(int iat=0; iat move_ion_cart; + move_ion_cart.x = dpos[iat][0] / ModuleBase::BOHR_TO_A / GlobalC::ucell.lat0; + move_ion_cart.y = dpos[iat][1] / ModuleBase::BOHR_TO_A / GlobalC::ucell.lat0; + move_ion_cart.z = dpos[iat][2] / ModuleBase::BOHR_TO_A / GlobalC::ucell.lat0; + + //convert to Direct coordinate + //note here the old GT is used + + //convert pos + ModuleBase::Vector3 move_ion_dr = move_ion_cart * GlobalC::ucell.GT; + + + int it = GlobalC::ucell.iat2it[iat]; + int ia = GlobalC::ucell.iat2ia[iat]; + Atom* atom = &GlobalC::ucell.atoms[it]; + + if(atom->mbl[ia].x == 1) + { + move_ion[iat * 3] = move_ion_dr.x; + } + if(atom->mbl[ia].y == 1) + { + move_ion[iat * 3 + 1] = move_ion_dr.y ; + } + if(atom->mbl[ia].z == 1) + { + move_ion[iat * 3 + 2] = move_ion_dr.z ; + } + } + GlobalC::ucell.update_pos_taud(move_ion); + pos = MAddM(pos, dpos); +} + +bool bfgs::IsRestrain() +{ + double a=0; + for(int i=0;i0) + { + w=dpos[i][j]; + } + else + { + w=-dpos[i][j]; + } + if(w>a) + { + a=w; + } + } + } + std::cout< bfgs::ReshapeMToV(std::vector> matrix) // 将n*3矩阵变成3n的数组 +std::vector bfgs::ReshapeMToV(std::vector> matrix) { int size = matrix.size(); std::vector result; @@ -408,7 +255,7 @@ std::vector bfgs::ReshapeMToV(std::vector> matrix) / return result; } -std::vector> bfgs::MAddM(std::vector> a, std::vector> b) // 矩阵相加 +std::vector> bfgs::MAddM(std::vector> a, std::vector> b) { std::vector> result = std::vector>(a.size(), std::vector(a[0].size(), 0.0)); for(int i = 0; i < a.size(); i++) @@ -421,7 +268,7 @@ std::vector> bfgs::MAddM(std::vector> a, return result; } -std::vector bfgs::VSubV(std::vector a, std::vector b) // 向量相减 +std::vector bfgs::VSubV(std::vector a, std::vector b) { std::vector result = std::vector(a.size(), 0.0); for(int i = 0; i < a.size(); i++) @@ -431,7 +278,7 @@ std::vector bfgs::VSubV(std::vector a, std::vector b) // return result; } -std::vector> bfgs::ReshapeVToM(std::vector matrix) // 将3n的数组变成n*3矩阵 +std::vector> bfgs::ReshapeVToM(std::vector matrix) { std::vector> result = std::vector>(matrix.size() / 3, std::vector(3)); for(int i = 0; i < result.size(); i++) @@ -444,7 +291,7 @@ std::vector> bfgs::ReshapeVToM(std::vector matrix) / return result; } -std::vector bfgs::DotInMAndV1(std::vector> matrix, std::vector vec) // 矩阵与向量相乘 +std::vector bfgs::DotInMAndV1(std::vector> matrix, std::vector vec) { std::vector result(matrix.size(), 0.0); for(int i = 0; i < result.size(); i++) @@ -456,7 +303,7 @@ std::vector bfgs::DotInMAndV1(std::vector> matrix, s } return result; } -std::vector bfgs::DotInMAndV2(std::vector> matrix, std::vector vec) // 矩阵与向量相乘 +std::vector bfgs::DotInMAndV2(std::vector> matrix, std::vector vec) { std::vector result(matrix.size(), 0.0); for(int i = 0; i < result.size(); i++) @@ -469,7 +316,7 @@ std::vector bfgs::DotInMAndV2(std::vector> matrix, s return result; } -double bfgs::DotInVAndV(std::vector vec1, std::vector vec2) // 向量与向量点乘 +double bfgs::DotInVAndV(std::vector vec1, std::vector vec2) { double result = 0.0; for(int i = 0; i < vec1.size(); i++) @@ -479,7 +326,7 @@ double bfgs::DotInVAndV(std::vector vec1, std::vector vec2) // return result; } -std::vector> bfgs::OuterVAndV(std::vector a, std::vector b) // 两个向量外积 +std::vector> bfgs::OuterVAndV(std::vector a, std::vector b) { std::vector> result = std::vector>(a.size(), std::vector(b.size(), 0.0)); for(int i = 0; i < a.size(); i++) @@ -492,7 +339,7 @@ std::vector> bfgs::OuterVAndV(std::vector a, std::ve return result; } -std::vector> bfgs::MPlus(std::vector> a, double b) // 矩阵除以常数 +std::vector> bfgs::MPlus(std::vector> a, double b) { std::vector> result = std::vector>(a.size(), std::vector(a[0].size(), 0.0)); for(int i = 0; i < a.size(); i++) @@ -505,7 +352,7 @@ std::vector> bfgs::MPlus(std::vector> a, return result; } -std::vector> bfgs::MSubM(std::vector> a, std::vector> b) // 两个矩阵相减 +std::vector> bfgs::MSubM(std::vector> a, std::vector> b) { std::vector> result = std::vector>(a.size(), std::vector(a[0].size(), 0.0)); for(int i = 0; i < a.size(); i++) @@ -518,7 +365,7 @@ std::vector> bfgs::MSubM(std::vector> a, return result; } -std::tuple, std::vector>> bfgs::GetEigenvalueAndEigenVector(std::vector> matrix) // 求特征值和特征向量 +std::tuple, std::vector>> bfgs::GetEigenvalueAndEigenVector(std::vector> matrix) { std::vector omega; std::vector> V; diff --git a/source/module_relax/mytest/bfgs.h b/source/module_relax/mytest/bfgs.h index 2396f89693..bfe669ac99 100644 --- a/source/module_relax/mytest/bfgs.h +++ b/source/module_relax/mytest/bfgs.h @@ -6,6 +6,7 @@ #include #include #include"module_base/lapack_connector.h" +#include "module_cell/unitcell.h" class bfgs { @@ -26,10 +27,13 @@ class bfgs // 成员函数声明 void initialize(int _size); - bool Step(std::vector> _force); + bool Step(std::vector> _force,UnitCell& ucell); + void GetPos(); void PrepareStep(); void Update(std::vector pos, std::vector force); void DetermineStep(); + void UpdatePos(); + bool IsRestrain(); // 矩阵方法声明 std::vector ReshapeMToV(std::vector> matrix); diff --git a/source/module_relax/relax_driver.cpp b/source/module_relax/relax_driver.cpp index 82253a6745..7293314ea9 100644 --- a/source/module_relax/relax_driver.cpp +++ b/source/module_relax/relax_driver.cpp @@ -95,13 +95,15 @@ void Relax_Driver::relax_driver(ModuleESolver::ESolver* p_esolver) std::vector> _force(force.nr,std::vector(force.nc,0)); for(int i = 0; i < force.nr; i++) { - /* code */ + for(int j=0;j +#include "../../mytest/bfgs.h" +#include "module_hamilt_pw/hamilt_pwdft/global.h" +#include "module_base/matrix3.h" +#include "module_base/vector3.h" + +TEST(BFGSTest, InitializeTest) { + bfgs optimizer; + int size = 5; + optimizer.initialize(size); + + EXPECT_EQ(optimizer.size, size); + EXPECT_EQ(optimizer.alpha, 70); + EXPECT_EQ(optimizer.maxstep, 100); + for (int i = 0; i < 3 * size; ++i) { + EXPECT_DOUBLE_EQ(optimizer.H[i][i], 70.0); + } +} + + + + +// test PrepareStep +TEST(BFGSTest, PrepareStepTest) { + bfgs optimizer; + int size = 3; + optimizer.initialize(size); + + std::vector> test_pos(size, std::vector(3, 0.0)); + std::vector> test_force(size, std::vector(3, 0.5)); + + optimizer.pos = test_pos; + optimizer.force = test_force; + optimizer.PrepareStep(); + for (const auto& row : optimizer.dpos) { + for (const auto& elem : row) { + EXPECT_NE(elem, 0.0); + } + } +} + +// test IsRestrain +TEST(BFGSTest, IsRestrainTest) { + bfgs optimizer; + int size = 3; + optimizer.initialize(size); + + optimizer.dpos = {{1e-8, 1e-8, 1e-8}, {1e-8, 1e-8, 1e-8}, {1e-8, 1e-8, 1e-8}}; + EXPECT_TRUE(optimizer.IsRestrain()); + + optimizer.dpos = {{0.001, 0.001, 0.001}, {0.001, 0.001, 0.001}, {0.001, 0.001, 0.001}}; + EXPECT_FALSE(optimizer.IsRestrain()); +} + +// test ReshapeMToV +TEST(BFGSTest, ReshapeMToVTest) { + bfgs optimizer; + std::vector> matrix = {{1.0, 2.0, 3.0}, {4.0, 5.0, 6.0}}; + std::vector expected = {1.0, 2.0, 3.0, 4.0, 5.0, 6.0}; + EXPECT_EQ(optimizer.ReshapeMToV(matrix), expected); + } +// test DotInVAndV +TEST(BFGSTest, DotInVAndVTest) +{ + bfgs optimizer; + std::vector vec1 = {1.0, 2.0, 3.0}; + std::vector vec2 = {4.0, 5.0, 6.0}; + double result = optimizer.DotInVAndV(vec1, vec2); + EXPECT_DOUBLE_EQ(result, 32.0); +} diff --git a/source/module_relax/relax_old/test/CMakeLists.txt b/source/module_relax/relax_old/test/CMakeLists.txt index e237b2032b..67517eba26 100644 --- a/source/module_relax/relax_old/test/CMakeLists.txt +++ b/source/module_relax/relax_old/test/CMakeLists.txt @@ -1,6 +1,7 @@ remove_definitions(-D__MPI) remove_definitions(-D__LCAO) + AddTest( TARGET lattice_change_methods_test LIBS parameter ${math_libs} base device diff --git a/tests/integrate/109_PW_CR/INPUT b/tests/integrate/109_PW_CR/INPUT index 7f6434a0f1..920cea7374 100644 --- a/tests/integrate/109_PW_CR/INPUT +++ b/tests/integrate/109_PW_CR/INPUT @@ -1,26 +1,28 @@ INPUT_PARAMETERS #Parameters (General) suffix autotest -pseudo_dir ../../PP_ORB +pseudo_dir ../../PP_ORB nbands 8 -calculation cell-relax +calculation relax #Parameters (Accuracy) -ecutwfc 20 +ecutwfc 50 scf_nmax 20 kpar 2 -nspin 2 +nspin 1 basis_type pw -relax_nmax 2 -relax_new 0 +relax_nmax 5 +relax_new 0 cal_stress 1 stress_thr 1e-6 cal_force 1 force_thr_ev 1.0e-3 +smearing_method sigma +smearing_sigma 0.01 #ks_solver scalapack_gvx mixing_type broyden -mixing_beta 0.7 -mixing_gg0 1.5 +mixing_beta 0.4 +mixing_gg0 1.0 diff --git a/tests/integrate/109_PW_CR/KPT b/tests/integrate/109_PW_CR/KPT index f5f7f4ec34..b6ec727c04 100644 --- a/tests/integrate/109_PW_CR/KPT +++ b/tests/integrate/109_PW_CR/KPT @@ -1,4 +1,4 @@ K_POINTS 0 Gamma -2 2 2 0 0 0 +3 1 2 3 1 2 diff --git a/tests/integrate/109_PW_CR/STRU b/tests/integrate/109_PW_CR/STRU index f80d715ab9..e130013b0c 100644 --- a/tests/integrate/109_PW_CR/STRU +++ b/tests/integrate/109_PW_CR/STRU @@ -14,5 +14,5 @@ Cartesian #Cartesian(Unit is LATTICE_CONSTANT) Si #Name of element 0.0 #Magnetic for this element. 2 #Number of atoms -0.00 0.00 0.00 0 0 0 #x,y,z, move_x, move_y, move_z -0.25 0.25 0.25 0 0 0 +0.00 0.00 0.00 1 1 1 #x,y,z, move_x, move_y, move_z +0.30 0.22 0.27 1 1 1 diff --git a/tests/integrate/109_PW_CR/log b/tests/integrate/109_PW_CR/log new file mode 100644 index 0000000000..7b320b43d0 --- /dev/null +++ b/tests/integrate/109_PW_CR/log @@ -0,0 +1,349 @@ + + ABACUS v3.8.2 + + Atomic-orbital Based Ab-initio Computation at UStc + + Website: http://abacus.ustc.edu.cn/ + Documentation: https://abacus.deepmodeling.com/ + Repository: https://github.com/abacusmodeling/abacus-develop + https://github.com/deepmodeling/abacus-develop + Commit: unknown + + Thu Nov 14 10:18:10 2024 + MAKE THE DIR : OUT.autotest/ + RUNNING WITH DEVICE : CPU / 13th Gen Intel(R) Core(TM) i7-13700KF + UNIFORM GRID DIM : 36 * 36 * 36 + UNIFORM GRID DIM(BIG) : 36 * 36 * 36 + DONE(0.0240671 SEC) : SETUP UNITCELL + DONE(0.138078 SEC) : SYMMETRY + DONE(0.457622 SEC) : INIT K-POINTS + --------------------------------------------------------- + Ion relaxation calculations + --------------------------------------------------------- + SPIN KPOINTS PROCESSORS THREADS + 1 4 4 4 + --------------------------------------------------------- + Use plane wave basis + --------------------------------------------------------- + ELEMENT NATOM XC + Si 2 + --------------------------------------------------------- + Initial plane wave basis and FFT box + --------------------------------------------------------- + DONE(0.461745 SEC) : INIT PLANEWAVE + DONE(0.468552 SEC) : LOCAL POTENTIAL + DONE(0.513438 SEC) : NON-LOCAL POTENTIAL + MEMORY FOR PSI (MB) : 0.198975 + DONE(0.513528 SEC) : INIT BASIS + ------------------------------------------- + STEP OF ION RELAXATION : 1 + ------------------------------------------- + START CHARGE : atomic + DONE(0.63044 SEC) : INIT SCF + * * * * * * + << Start SCF iteration. + ITER ETOT/eV EDIFF/eV DRHO TIME/s + CG1 -2.09433649e+02 0.00000000e+00 8.5284e-02 0.35 + CG2 -2.09613565e+02 -1.79916640e-01 3.4626e-02 0.23 + CG3 -2.09643627e+02 -3.00618814e-02 2.5022e-03 0.21 + CG4 -2.09648876e+02 -5.24887761e-03 2.7937e-04 0.23 + CG5 -2.09649850e+02 -9.73805072e-04 5.8142e-05 0.23 + CG6 -2.09649922e+02 -7.26283203e-05 2.0148e-06 0.20 + CG7 -2.09649931e+02 -8.74541703e-06 2.6068e-07 0.25 + CG8 -2.09649932e+02 -8.00758341e-07 1.6288e-08 0.22 + CG9 -2.09649932e+02 -6.03854739e-08 2.2132e-09 0.24 + CG10 -2.09649932e+02 -5.20460589e-09 1.3470e-10 0.20 + >> Leave SCF iteration. + * * * * * * +---------------------------------------------------------------- + TOTAL-STRESS (KBAR) +---------------------------------------------------------------- + 197.2449398464 -170.0982929156 361.4645962196 + -170.0982929156 36.5558312680 -192.4603517924 + 361.4645962196 -192.4603517924 221.2821077326 +---------------------------------------------------------------- + TOTAL-PRESSURE: 151.694293 KBAR + +3.881673 -2.401667 3.497016 +-3.881673 2.401667 -3.497016 +enter Step +70.000000 0.000000 0.000000 0.000000 0.000000 0.000000 +0.000000 70.000000 0.000000 0.000000 0.000000 0.000000 +0.000000 0.000000 70.000000 0.000000 0.000000 0.000000 +0.000000 0.000000 0.000000 70.000000 0.000000 0.000000 +0.000000 0.000000 0.000000 0.000000 70.000000 0.000000 +0.000000 0.000000 0.000000 0.000000 0.000000 70.000000 +70.000000 70.000000 70.000000 70.000000 70.000000 70.000000 +0.055452 -0.034310 0.049957 +-0.055452 0.034310 -0.049957 +0.055452 + ------------------------------------------- + STEP OF ION RELAXATION : 2 + ------------------------------------------- + DONE(3.273238 SEC) : INIT SCF + * * * * * * + << Start SCF iteration. + ITER ETOT/eV EDIFF/eV DRHO TIME/s + CG1 -2.10297965e+02 0.00000000e+00 2.0054e-02 0.33 + CG2 -2.10317411e+02 -1.94460713e-02 1.8435e-03 0.19 + CG3 -2.10318532e+02 -1.12027319e-03 4.1098e-04 0.20 + CG4 -2.10319494e+02 -9.62247677e-04 2.8479e-05 0.21 + CG5 -2.10319586e+02 -9.21207433e-05 2.7825e-06 0.23 + CG6 -2.10319592e+02 -5.47931137e-06 2.4066e-07 0.21 + CG7 -2.10319593e+02 -9.89652066e-07 4.3308e-08 0.22 + CG8 -2.10319593e+02 -1.68264976e-07 3.9040e-09 0.23 + CG9 -2.10319593e+02 5.72215175e-10 7.9284e-10 0.20 + >> Leave SCF iteration. + * * * * * * +---------------------------------------------------------------- + TOTAL-STRESS (KBAR) +---------------------------------------------------------------- + 172.1352256193 -56.7799549879 225.0631356841 + -56.7799549879 58.7820529378 -81.2579126694 + 225.0631356841 -81.2579126694 150.3408180881 +---------------------------------------------------------------- + TOTAL-PRESSURE: 127.086032 KBAR + +1.782091 -0.738145 1.481329 +-1.782091 0.738145 -1.481329 +enter Step +PrintPos +0.055452 -0.034310 0.049957 1.565417 1.222947 1.408825 +PrintPos0 +0.000000 0.000000 0.000000 1.620869 1.188637 1.458782 +62.088993 3.499304 -6.651691 7.911007 -3.499304 6.651691 +3.499304 68.940496 2.775898 -3.499304 1.059504 -2.775898 +-6.651691 2.775898 64.463837 6.651691 -2.775898 5.536163 +7.911007 -3.499304 6.651691 62.088993 3.499304 -6.651691 +-3.499304 1.059504 -2.775898 3.499304 68.940496 2.775898 +6.651691 -2.775898 5.536163 -6.651691 2.775898 64.463837 +40.161962 70.000000 70.000000 70.000000 70.000000 70.824688 +0.044516 -0.018536 0.037036 +-0.044516 0.018536 -0.037036 +0.044516 + ------------------------------------------- + STEP OF ION RELAXATION : 3 + ------------------------------------------- + DONE(5.563705 SEC) : INIT SCF + * * * * * * + << Start SCF iteration. + ITER ETOT/eV EDIFF/eV DRHO TIME/s + CG1 -2.10498385e+02 0.00000000e+00 4.9091e-03 0.35 + CG2 -2.10495145e+02 3.24003761e-03 1.2079e-03 0.19 + CG3 -2.10497627e+02 -2.48236077e-03 7.9036e-05 0.23 + CG4 -2.10497784e+02 -1.56527885e-04 8.7928e-06 0.21 + CG5 -2.10497808e+02 -2.46105727e-05 5.3092e-06 0.24 + CG6 -2.10497819e+02 -1.06809507e-05 5.4730e-08 0.20 + CG7 -2.10497820e+02 -5.24139118e-07 2.4261e-08 0.27 + CG8 -2.10497820e+02 -5.49986128e-08 1.9766e-09 0.22 + CG9 -2.10497820e+02 -7.43275513e-09 1.2896e-10 0.23 + >> Leave SCF iteration. + * * * * * * +---------------------------------------------------------------- + TOTAL-STRESS (KBAR) +---------------------------------------------------------------- + 143.1950221470 1.4357315754 158.9050591571 + 1.4357315754 108.2439651185 -4.5214324511 + 158.9050591571 -4.5214324511 143.2683153907 +---------------------------------------------------------------- + TOTAL-PRESSURE: 131.569101 KBAR + +0.722191 -0.642841 -0.625282 +-0.722191 0.642841 0.625282 +enter Step +PrintPos +0.099968 -0.052845 0.086993 1.520901 1.241483 1.371789 +PrintPos0 +0.055452 -0.034310 0.049957 1.565417 1.222947 1.408825 +55.730801 7.567042 -6.821234 14.269199 -7.567042 6.821234 +7.567042 67.126811 5.697096 -7.567042 2.873189 -5.697096 +-6.821234 5.697096 74.490259 6.821234 -5.697096 -4.490259 +14.269199 -7.567042 6.821234 55.730801 7.567042 -6.821234 +-7.567042 2.873189 -5.697096 7.567042 67.126811 5.697096 +6.821234 -5.697096 -4.490259 -6.821234 5.697096 74.490259 +28.001364 70.000000 70.000000 70.000000 70.769450 85.924928 +0.022241 -0.014939 -0.002037 +-0.022241 0.014939 0.002037 +0.022241 + ------------------------------------------- + STEP OF ION RELAXATION : 4 + ------------------------------------------- + DONE(7.980961 SEC) : INIT SCF + * * * * * * + << Start SCF iteration. + ITER ETOT/eV EDIFF/eV DRHO TIME/s + CG1 -2.10540966e+02 0.00000000e+00 2.4805e-03 0.34 + CG2 -2.10540782e+02 1.83911470e-04 6.8920e-04 0.19 + CG3 -2.10541865e+02 -1.08265326e-03 2.6603e-05 0.22 + CG4 -2.10541939e+02 -7.40361727e-05 1.3588e-06 0.24 + CG5 -2.10541944e+02 -5.47013299e-06 1.7385e-07 0.21 + CG6 -2.10541945e+02 -5.53306938e-07 3.6918e-08 0.23 + CG7 -2.10541945e+02 -1.01380404e-07 1.8052e-09 0.22 + CG8 -2.10541945e+02 -8.16006004e-09 6.8073e-11 0.23 + >> Leave SCF iteration. + * * * * * * +---------------------------------------------------------------- + TOTAL-STRESS (KBAR) +---------------------------------------------------------------- + 140.3012564840 5.2421485202 133.4592374260 + 5.2421485202 125.4764222607 19.0982867632 + 133.4592374260 19.0982867632 138.6720950027 +---------------------------------------------------------------- + TOTAL-PRESSURE: 134.816591 KBAR + +0.153656 -0.594534 -0.990953 +-0.153656 0.594534 0.990953 +enter Step +PrintPos +0.122209 -0.067784 0.084957 1.498660 1.256422 1.373826 +PrintPos0 +0.099968 -0.052845 0.086993 1.520901 1.241483 1.371789 +58.850342 15.129206 9.904238 11.149658 -15.129206 -9.904238 +15.129206 59.493552 -2.585101 -15.129206 10.506448 2.585101 +9.904238 -2.585101 72.345495 -9.904238 2.585101 -2.345495 +11.149658 -15.129206 -9.904238 58.850342 15.129206 9.904238 +-15.129206 10.506448 2.585101 15.129206 59.493552 -2.585101 +-9.904238 2.585101 -2.345495 9.904238 -2.585101 72.345495 +12.839387 69.497979 70.000000 70.000000 70.000000 89.041412 +0.041764 -0.041506 -0.027442 +-0.041764 0.041506 0.027442 +0.041764 + ------------------------------------------- + STEP OF ION RELAXATION : 5 + ------------------------------------------- + DONE(10.119294 SEC) : INIT SCF + * * * * * * + << Start SCF iteration. + ITER ETOT/eV EDIFF/eV DRHO TIME/s + CG1 -2.10531790e+02 0.00000000e+00 5.6554e-04 0.38 + CG2 -2.10532276e+02 -4.86153175e-04 2.0544e-04 0.19 + CG3 -2.10532623e+02 -3.47284148e-04 6.8772e-06 0.26 + CG4 -2.10532644e+02 -2.08474803e-05 5.3711e-07 0.25 + CG5 -2.10532646e+02 -2.28647195e-06 5.0570e-08 0.24 + CG6 -2.10532646e+02 -1.54124644e-07 1.4373e-09 0.27 + CG7 -2.10532646e+02 -6.94546832e-09 2.5955e-10 0.24 + >> Leave SCF iteration. + * * * * * * +---------------------------------------------------------------- + TOTAL-STRESS (KBAR) +---------------------------------------------------------------- + 143.5868937347 -15.6099725214 101.0035898084 + -15.6099725214 127.3398961592 54.5118072426 + 101.0035898084 54.5118072426 148.4758108161 +---------------------------------------------------------------- + TOTAL-PRESSURE: 139.800867 KBAR + +-1.164840 0.741963 -0.124408 +1.164840 -0.741963 0.124408 +enter Step +PrintPos +0.163973 -0.109290 0.057514 1.456896 1.297928 1.401268 +PrintPos0 +0.122209 -0.067784 0.084957 1.498660 1.256422 1.373826 +65.021045 9.548721 7.223423 4.978955 -9.548721 -7.223423 +9.548721 62.953222 -3.395443 -9.548721 7.046778 3.395443 +7.223423 -3.395443 66.917075 -7.223423 3.395443 3.082925 +4.978955 -9.548721 -7.223423 65.021045 9.548721 7.223423 +-9.548721 7.046778 3.395443 9.548721 62.953222 -3.395443 +-7.223423 3.395443 3.082925 7.223423 -3.395443 66.917075 +31.826059 67.421565 70.000000 70.000000 70.000000 80.535060 +-0.029392 0.024569 0.007462 +0.029392 -0.024569 -0.007462 +0.029392 +TIME STATISTICS +----------------------------------------------------------------------------- + CLASS_NAME NAME TIME/s CALLS AVG/s PER/% +----------------------------------------------------------------------------- + total 12.12 25 0.48 100.00 + Driver reading 0.01 1 0.01 0.05 + Input_Conv Convert 0.00 1 0.00 0.00 + Driver driver_line 12.11 1 12.11 99.95 + UnitCell check_tau 0.00 1 0.00 0.00 + PW_Basis_Sup setuptransform 0.00 1 0.00 0.04 + PW_Basis_Sup distributeg 0.00 1 0.00 0.02 + mymath heapsort 0.00 207 0.00 0.01 + Symmetry analy_sys 0.11 1 0.11 0.94 + PW_Basis_K setuptransform 0.00 1 0.00 0.03 + PW_Basis_K distributeg 0.00 1 0.00 0.02 + PW_Basis setup_struc_factor 0.01 5 0.00 0.09 + ppcell_vnl init 0.00 1 0.00 0.01 + ppcell_vl init_vloc 0.00 1 0.00 0.02 + ppcell_vnl init_vnl 0.04 1 0.04 0.37 + WF_atomic init_at_1 0.00 1 0.00 0.00 + wavefunc wfcinit 0.00 1 0.00 0.00 + Ions opt_ions 11.61 1 11.61 95.76 + ESolver_KS_PW runner 10.95 5 2.19 90.32 + ESolver_KS_PW before_scf 0.53 5 0.11 4.41 + H_Ewald_pw compute_ewald 0.02 5 0.00 0.19 + Charge set_rho_core 0.00 5 0.00 0.01 + Charge atomic_rho 0.16 10 0.02 1.36 + PW_Basis_Sup recip2real 1.12 360 0.00 9.22 + PW_Basis_Sup gathers_scatterp 0.19 360 0.00 1.54 + Potential init_pot 0.32 5 0.06 2.63 + Potential update_from_charge 2.88 48 0.06 23.73 + Potential cal_fixed_v 0.02 5 0.00 0.16 + PotLocal cal_fixed_v 0.02 5 0.00 0.16 + Potential cal_v_eff 2.85 48 0.06 23.55 + H_Hartree_pw v_hartree 0.44 48 0.01 3.64 + PW_Basis_Sup real2recip 1.06 469 0.00 8.78 + PW_Basis_Sup gatherp_scatters 0.12 469 0.00 0.97 + PotXC cal_v_eff 2.40 48 0.05 19.80 + XC_Functional v_xc 2.39 48 0.05 19.74 + Potential interpolate_vrs 0.00 48 0.00 0.01 + Symmetry rhog_symmetry 0.44 52 0.01 3.60 + Symmetry group fft grids 0.12 52 0.00 0.95 + Charge_Mixing init_mixing 0.00 5 0.00 0.00 + ESolver_KS_PW hamilt2density_single 6.97 47 0.15 57.49 + HSolverPW solve 6.16 47 0.13 50.79 + Nonlocal getvnl 0.11 94 0.00 0.89 + pp_cell_vnl getvnl 0.11 94 0.00 0.88 + Structure_Factor get_sk 0.02 114 0.00 0.15 + DiagoIterAssist diagH_subspace 1.00 90 0.01 8.23 + Operator hPsi 4.31 2520 0.00 35.53 + Operator EkineticPW 0.05 2520 0.00 0.43 + Operator VeffPW 4.14 2520 0.00 34.13 + PW_Basis_K recip2real 2.82 3902 0.00 23.26 + PW_Basis_K gathers_scatterp 1.36 3902 0.00 11.20 + PW_Basis_K real2recip 1.38 3150 0.00 11.38 + PW_Basis_K gatherp_scatters 0.28 3150 0.00 2.27 + Operator NonlocalPW 0.10 2520 0.00 0.84 + Nonlocal add_nonlocal_pp 0.05 2520 0.00 0.42 + DiagoIterAssist diagH_LAPACK 0.00 90 0.00 0.03 + DiagoCG diag_once 3.89 94 0.04 32.08 + DiagoCG_New spsi_func 0.02 4860 0.00 0.14 + DiagoCG_New hpsi_func 3.34 2430 0.00 27.54 + ElecStatePW psiToRho 1.14 47 0.02 9.43 + Charge rho_mpi 0.14 47 0.00 1.16 + Charge reduce_diff_pools 0.14 47 0.00 1.16 + Charge_Mixing get_drho 0.27 47 0.01 2.25 + Charge_Mixing inner_product_recip_rho 0.03 47 0.00 0.23 + Charge mix_rho 0.35 38 0.01 2.88 + Charge Broyden_mixing 0.15 38 0.00 1.24 + Charge_Mixing inner_product_recip_hartree 0.15 256 0.00 1.21 + ESolver_KS_PW after_scf 0.15 5 0.03 1.20 + ModuleIO write_rhog 0.04 5 0.01 0.30 + Forces cal_force_loc 0.02 5 0.00 0.20 + Forces cal_force_ew 0.02 5 0.00 0.13 + Forces cal_force_nl 0.03 5 0.01 0.29 + FS_Nonlocal_tools cal_becp 0.02 20 0.00 0.19 + FS_Nonlocal_tools cal_dbecp_f 0.02 30 0.00 0.19 + Forces cal_force_cc 0.00 5 0.00 0.00 + Forces cal_force_scc 0.05 5 0.01 0.42 + Stress_PW cal_stress 0.53 5 0.11 4.38 + Stress_Func stress_kin 0.03 5 0.01 0.23 + Stress_Func stress_har 0.02 5 0.00 0.20 + Stress_Func stress_ewa 0.02 5 0.00 0.16 + Stress_Func stress_gga 0.15 5 0.03 1.25 + Stress_Func stress_loc 0.09 5 0.02 0.72 + Stress_Func stress_cc 0.00 5 0.00 0.00 + Stress_Func stress_nl 0.22 5 0.04 1.81 + FS_Nonlocal_tools cal_dbecp_s 0.20 60 0.00 1.65 + Charge_Extra extrapolate_charge 0.08 4 0.02 0.65 + ModuleIO write_istate_info 0.00 1 0.00 0.00 +----------------------------------------------------------------------------- + + + START Time : Thu Nov 14 10:18:10 2024 + FINISH Time : Thu Nov 14 10:18:22 2024 + TOTAL Time : 12 + SEE INFORMATION IN : OUT.autotest/ diff --git a/tests/integrate/109_PW_CR/log1 b/tests/integrate/109_PW_CR/log1 new file mode 100644 index 0000000000..2ccfbe3cff --- /dev/null +++ b/tests/integrate/109_PW_CR/log1 @@ -0,0 +1,182 @@ + + ABACUS v3.6.2 + + Atomic-orbital Based Ab-initio Computation at UStc + + Website: http://abacus.ustc.edu.cn/ + Documentation: https://abacus.deepmodeling.com/ + Repository: https://github.com/abacusmodeling/abacus-develop + https://github.com/deepmodeling/abacus-develop + Commit: c36e517 (Mon Apr 29 14:14:01 2024 +0800) + + Tue Nov 12 07:17:12 2024 + MAKE THE DIR : OUT.autotest/ + RUNNING WITH DEVICE : CPU / 13th Gen Intel(R) Core(TM) i7-13700KF + UNIFORM GRID DIM : 36 * 36 * 36 + UNIFORM GRID DIM(BIG) : 36 * 36 * 36 + DONE(0.0120656 SEC) : SETUP UNITCELL + DONE(0.0384921 SEC) : SYMMETRY + DONE(0.0885534 SEC) : INIT K-POINTS + --------------------------------------------------------- + Ion relaxation calculations + --------------------------------------------------------- + SPIN KPOINTS PROCESSORS + 1 4 4 + --------------------------------------------------------- + Use plane wave basis + --------------------------------------------------------- + ELEMENT NATOM XC + Si 2 + --------------------------------------------------------- + Initial plane wave basis and FFT box + --------------------------------------------------------- + DONE(0.0892388 SEC) : INIT PLANEWAVE + MEMORY FOR PSI (MB) : 0.354614 + DONE(0.0903114 SEC) : LOCAL POTENTIAL + DONE(0.105716 SEC) : NON-LOCAL POTENTIAL + DONE(0.105748 SEC) : INIT BASIS + ------------------------------------------- + STEP OF ION RELAXATION : 1 + ------------------------------------------- + START CHARGE : atomic + DONE(0.119946 SEC) : INIT SCF + ITER ETOT(eV) EDIFF(eV) DRHO TIME(s) + CG1 -2.093732e+02 0.000000e+00 8.512e-02 1.481e-01 + CG2 -2.096318e+02 -2.586107e-01 3.313e-02 4.362e-02 + CG3 -2.096662e+02 -3.435615e-02 1.945e-03 5.755e-02 + CG4 -2.096718e+02 -5.607343e-03 2.836e-04 8.356e-02 + CG5 -2.096727e+02 -8.547360e-04 1.001e-04 6.490e-02 + CG6 -2.096728e+02 -1.406125e-04 1.620e-06 6.234e-02 + CG7 -2.096728e+02 -1.332671e-05 4.041e-07 6.528e-02 + CG8 -2.096728e+02 -9.344133e-07 2.013e-08 4.775e-02 + CG9 -2.096728e+02 -4.854229e-08 1.352e-08 8.534e-02 + CG10 -2.096728e+02 -2.322511e-08 4.497e-11 6.897e-02 +---------------------------------------------------------------- +TOTAL-STRESS (KBAR) +---------------------------------------------------------------- + 198.1530139862 -170.4921647597 362.2736748129 + -170.4921647597 37.4842351327 -193.0394966284 + 362.2736748129 -193.0394966284 222.6293681039 +---------------------------------------------------------------- + TOTAL-PRESSURE: 152.755539 KBAR + + ETOT DIFF (eV) : 0.000000 + LARGEST GRAD (eV/A) : 3.885894 +printforce +3.885892 -2.403275 3.497367 +-3.885892 2.403275 -3.497367 + ------------------------------------------- + STEP OF ION RELAXATION : 2 + ------------------------------------------- + DONE(0.898857 SEC) : INIT SCF + ITER ETOT(eV) EDIFF(eV) DRHO TIME(s) + CG1 -2.104913e+02 0.000000e+00 3.062e-02 1.650e-01 + CG2 -2.104707e+02 2.059763e-02 9.537e-03 4.978e-02 + CG3 -2.104850e+02 -1.433216e-02 2.816e-04 4.361e-02 + CG4 -2.104866e+02 -1.616468e-03 1.163e-04 8.815e-02 + CG5 -2.104867e+02 -4.406865e-05 2.778e-05 6.156e-02 + CG6 -2.104867e+02 -6.426147e-05 3.684e-07 7.769e-02 + CG7 -2.104867e+02 -6.296494e-06 1.001e-07 7.831e-02 + CG8 -2.104867e+02 -7.487122e-08 7.685e-08 7.950e-02 + CG9 -2.104867e+02 -1.033182e-07 1.891e-09 5.092e-02 + CG10 -2.104867e+02 -8.642827e-09 3.951e-10 7.587e-02 +---------------------------------------------------------------- +TOTAL-STRESS (KBAR) +---------------------------------------------------------------- + 150.6993324585 36.9462517379 132.1880569893 + 36.9462517379 125.9866214734 31.0547868019 + 132.1880569893 31.0547868019 145.2455275471 +---------------------------------------------------------------- + TOTAL-PRESSURE: 140.643827 KBAR + +printforce +-0.182979 -0.219077 -1.962179 +0.182979 0.219077 1.962179 +TIME STATISTICS +------------------------------------------------------------------------------------- + CLASS_NAME NAME TIME(Sec) CALLS AVG(Sec) PER(%) +------------------------------------------------------------------------------------- + total 1.69 19 0.09 100.00 +Driver reading 0.01 1 0.01 0.34 +Input Init 0.00 1 0.00 0.26 +Input_Conv Convert 0.00 1 0.00 0.01 +Driver driver_line 1.68 1 1.68 99.66 +UnitCell check_tau 0.00 1 0.00 0.00 +PW_Basis_Sup setuptransform 0.00 1 0.00 0.15 +PW_Basis_Sup distributeg 0.00 1 0.00 0.01 +mymath heapsort 0.00 197 0.00 0.02 +Symmetry analy_sys 0.00 1 0.00 0.00 +PW_Basis_K setuptransform 0.00 1 0.00 0.03 +PW_Basis_K distributeg 0.00 1 0.00 0.01 +PW_Basis setup_struc_factor 0.00 2 0.00 0.01 +ppcell_vnl init 0.00 1 0.00 0.01 +ppcell_vl init_vloc 0.00 1 0.00 0.04 +ppcell_vnl init_vnl 0.02 1 0.02 0.91 +WF_atomic init_at_1 0.00 1 0.00 0.00 +wavefunc wfcinit 0.00 1 0.00 0.00 +Ions opt_ions 1.58 1 1.58 93.72 +ESolver_KS_PW run 1.56 2 0.78 92.73 +H_Ewald_pw compute_ewald 0.00 2 0.00 0.13 +Charge set_rho_core 0.00 2 0.00 0.00 +Charge atomic_rho 0.00 4 0.00 0.26 +PW_Basis_Sup recip2real 0.03 163 0.00 1.86 +PW_Basis_Sup gathers_scatterp 0.01 163 0.00 0.60 +Potential init_pot 0.01 2 0.01 0.69 +Potential update_from_charge 0.10 22 0.00 5.84 +Potential cal_fixed_v 0.00 2 0.00 0.02 +PotLocal cal_fixed_v 0.00 2 0.00 0.01 +Potential cal_v_eff 0.10 22 0.00 5.82 +H_Hartree_pw v_hartree 0.01 22 0.00 0.55 +PW_Basis_Sup real2recip 0.04 209 0.00 2.27 +PW_Basis_Sup gatherp_scatters 0.02 209 0.00 1.03 +PotXC cal_v_eff 0.09 22 0.00 5.24 +XC_Functional v_xc 0.09 22 0.00 5.23 +Potential interpolate_vrs 0.00 22 0.00 0.01 +Symmetry rhog_symmetry 0.04 23 0.00 2.56 +Symmetry group fft grids 0.02 23 0.00 1.43 +Charge_Mixing init_mixing 0.00 2 0.00 0.00 +ESolver_KS_PW hamilt2density 1.40 21 0.07 82.75 +HSolverPW solve 1.34 21 0.06 79.42 +Nonlocal getvnl 0.01 84 0.00 0.37 +pp_cell_vnl getvnl 0.01 100 0.00 0.41 +Structure_Factor get_sk 0.00 164 0.00 0.05 +DiagoIterAssist diagH_subspace 0.25 76 0.00 15.01 +Operator hPsi 1.05 3843 0.00 62.29 +Operator EkineticPW 0.00 3843 0.00 0.18 +Operator VeffPW 0.98 3843 0.00 58.29 +PW_Basis_K recip2real 0.53 6007 0.00 31.29 +PW_Basis_K gathers_scatterp 0.12 6007 0.00 7.36 +PW_Basis_K real2recip 0.53 4831 0.00 31.49 +PW_Basis_K gatherp_scatters 0.21 4831 0.00 12.19 +Operator NonlocalPW 0.06 3843 0.00 3.71 +Nonlocal add_nonlocal_pp 0.02 3843 0.00 1.20 +DiagoIterAssist diagH_LAPACK 0.00 76 0.00 0.26 +DiagoCG diag_once 0.95 84 0.01 56.42 +DiagoCG_New spsi_func 0.01 7534 0.00 0.37 +DiagoCG_New hpsi_func 0.82 3767 0.00 48.55 +ElecStatePW psiToRho 0.11 21 0.01 6.42 +Charge_Mixing get_drho 0.01 21 0.00 0.46 +Charge_Mixing inner_product_recip_rho 0.00 21 0.00 0.01 +Charge mix_rho 0.01 18 0.00 0.32 +Charge Broyden_mixing 0.00 18 0.00 0.09 +Charge_Mixing inner_product_recip_hartree 0.00 144 0.00 0.07 +Forces cal_force_loc 0.00 2 0.00 0.04 +Forces cal_force_ew 0.00 2 0.00 0.02 +Forces cal_force_nl 0.00 2 0.00 0.09 +Forces cal_force_cc 0.00 2 0.00 0.00 +Forces cal_force_scc 0.00 2 0.00 0.14 +Stress_PW cal_stress 0.01 2 0.01 0.67 +Stress_Func stress_kin 0.00 2 0.00 0.01 +Stress_Func stress_har 0.00 2 0.00 0.02 +Stress_Func stress_ewa 0.00 2 0.00 0.02 +Stress_Func stress_gga 0.00 2 0.00 0.22 +Stress_Func stress_loc 0.00 2 0.00 0.13 +Stress_Func stress_cc 0.00 2 0.00 0.00 +Stress_Func stress_nl 0.00 2 0.00 0.27 +ModuleIO write_istate_info 0.00 1 0.00 0.01 +------------------------------------------------------------------------------------- + + START Time : Tue Nov 12 07:17:12 2024 + FINISH Time : Tue Nov 12 07:17:14 2024 + TOTAL Time : 2 + SEE INFORMATION IN : OUT.autotest/ From 1899f5338684f13c412b930c126b4fc8a74ba4fb Mon Sep 17 00:00:00 2001 From: feiyang <2100011095@stu.pku.edu.cn> Date: Fri, 15 Nov 2024 07:13:50 +0000 Subject: [PATCH 04/20] bfgs_trad --- source/Makefile.Objects | 2 ++ source/module_io/read_input_item_relax.cpp | 2 +- source/module_relax/relax_driver.cpp | 42 +++++++++++++--------- 3 files changed, 29 insertions(+), 17 deletions(-) diff --git a/source/Makefile.Objects b/source/Makefile.Objects index 430e7b05c9..638f1151fb 100644 --- a/source/Makefile.Objects +++ b/source/Makefile.Objects @@ -436,6 +436,8 @@ OBJS_RELAXATION=bfgs_basic.o\ relax_old.o\ relax.o\ line_search.o\ + bfgs.o\ + OBJS_SURCHEM=surchem.o\ H_correction_pw.o\ diff --git a/source/module_io/read_input_item_relax.cpp b/source/module_io/read_input_item_relax.cpp index c9545576c2..51fc5a1e41 100644 --- a/source/module_io/read_input_item_relax.cpp +++ b/source/module_io/read_input_item_relax.cpp @@ -12,7 +12,7 @@ void ReadInput::item_relax() item.annotation = "cg; bfgs; sd; cg; cg_bfgs;"; read_sync_string(input.relax_method); item.check_value = [](const Input_Item& item, const Parameter& para) { - const std::vector relax_methods = {"cg", "bfgs", "sd", "cg_bfgs"}; + const std::vector relax_methods = {"cg", "bfgs", "sd", "cg_bfgs","bfgs_trad"}; if (!find_str(relax_methods, para.input.relax_method)) { const std::string warningstr = nofound_str(relax_methods, "relax_method"); diff --git a/source/module_relax/relax_driver.cpp b/source/module_relax/relax_driver.cpp index 7293314ea9..75d2401b75 100644 --- a/source/module_relax/relax_driver.cpp +++ b/source/module_relax/relax_driver.cpp @@ -14,9 +14,13 @@ void Relax_Driver::relax_driver(ModuleESolver::ESolver* p_esolver) ModuleBase::TITLE("Ions", "opt_ions"); ModuleBase::timer::tick("Ions", "opt_ions"); - if (PARAM.inp.calculation == "relax" || PARAM.inp.calculation == "cell-relax") + if (PARAM.inp.calculation == "relax" || PARAM.inp.calculation == "cell-relax" ) { - if (!PARAM.inp.relax_new) + if(PARAM.inp.relax_method == "relax_trad") + { + mybfgs.initialize(GlobalC::ucell.nat); + } + else if (!PARAM.inp.relax_new) { rl_old.init_relax(GlobalC::ucell.nat); } @@ -25,7 +29,7 @@ void Relax_Driver::relax_driver(ModuleESolver::ESolver* p_esolver) rl.init_relax(GlobalC::ucell.nat); } } - mybfgs.initialize(GlobalC::ucell.nat); + this->istep = 1; int force_step = 1; // pengfei Li 2018-05-14 @@ -78,10 +82,27 @@ void Relax_Driver::relax_driver(ModuleESolver::ESolver* p_esolver) if (PARAM.inp.calculation == "relax" || PARAM.inp.calculation == "cell-relax") { - /*if (PARAM.inp.relax_new) + if(PARAM.inp.relax_method == "bfgs_trad") + { + std::vector> _force(force.nr,std::vector(force.nc,0)); + for(int i = 0; i < force.nr; i++) + { + + for(int j=0;jetot); } + else { stop = rl_old.relax_step(istep, @@ -91,19 +112,8 @@ void Relax_Driver::relax_driver(ModuleESolver::ESolver* p_esolver) stress, force_step, stress_step); // pengfei Li 2018-05-14 - }*/ - std::vector> _force(force.nr,std::vector(force.nc,0)); - for(int i = 0; i < force.nr; i++) - { - - for(int j=0;j Date: Fri, 15 Nov 2024 07:46:29 +0000 Subject: [PATCH 05/20] new bfgs method --- SiH2-3et-relax/INPUT | 1 + SiH2-3et-relax/log | 292 ++---------------- source/Makefile.Objects | 1 + source/module_relax/CMakeLists.txt | 2 +- .../{mytest => bfgs_traditional}/bfgs.cpp | 0 .../{mytest => bfgs_traditional}/bfgs.h | 0 source/module_relax/relax_driver.h | 2 +- .../relax_new/test/CMakeLists.txt | 4 +- .../module_relax/relax_new/test/bfgs_test.cpp | 2 +- 9 files changed, 31 insertions(+), 273 deletions(-) rename source/module_relax/{mytest => bfgs_traditional}/bfgs.cpp (100%) rename source/module_relax/{mytest => bfgs_traditional}/bfgs.h (100%) diff --git a/SiH2-3et-relax/INPUT b/SiH2-3et-relax/INPUT index b623a245bd..1a58b879cb 100644 --- a/SiH2-3et-relax/INPUT +++ b/SiH2-3et-relax/INPUT @@ -2,6 +2,7 @@ INPUT_PARAMETERS # Created by Atomic Simulation Enviroment suffix abacus calculation relax +relax_method bfgs_trad relax_nmax 50 nspin 2 nupdown 2 diff --git a/SiH2-3et-relax/log b/SiH2-3et-relax/log index 6913ff84e3..dcbaeabdfa 100644 --- a/SiH2-3et-relax/log +++ b/SiH2-3et-relax/log @@ -9,13 +9,13 @@ https://github.com/deepmodeling/abacus-develop Commit: unknown - Thu Nov 14 10:21:09 2024 + Fri Nov 15 07:24:01 2024 MAKE THE DIR : OUT.abacus/ RUNNING WITH DEVICE : CPU / 13th Gen Intel(R) Core(TM) i7-13700KF UNIFORM GRID DIM : 256 * 256 * 256 UNIFORM GRID DIM(BIG) : 256 * 256 * 256 - DONE(2.28839 SEC) : SETUP UNITCELL - DONE(2.62179 SEC) : INIT K-POINTS + DONE(2.0302 SEC) : SETUP UNITCELL + DONE(2.10551 SEC) : INIT K-POINTS --------------------------------------------------------- Ion relaxation calculations --------------------------------------------------------- @@ -30,273 +30,29 @@ --------------------------------------------------------- Initial plane wave basis and FFT box --------------------------------------------------------- - DONE(3.50903 SEC) : INIT PLANEWAVE - DONE(4.89165 SEC) : LOCAL POTENTIAL - DONE(6.02286 SEC) : NON-LOCAL POTENTIAL + DONE(2.98353 SEC) : INIT PLANEWAVE + DONE(4.27888 SEC) : LOCAL POTENTIAL + DONE(4.41184 SEC) : NON-LOCAL POTENTIAL MEMORY FOR PSI (MB) : 61.8411 - DONE(6.33916 SEC) : INIT BASIS + DONE(4.60712 SEC) : INIT BASIS ------------------------------------------- - STEP OF RELAXATION : 1 + STEP OF ION RELAXATION : 1 ------------------------------------------- START CHARGE : atomic - DONE(27.8766 SEC) : INIT SCF - * * * * * * - << Start SCF iteration. + DONE(18.8758 SEC) : INIT SCF ITER TMAG AMAG ETOT/eV EDIFF/eV DRHO TIME/s - DA1 2.00e+00 2.03e+00 -1.36488047e+02 0.00000000e+00 3.9185e-01 76.67 - DA2 2.00e+00 2.03e+00 -1.35639323e+02 8.48724853e-01 2.9515e-01 51.87 - DA3 2.00e+00 2.03e+00 -1.35175018e+02 4.64304219e-01 1.2141e-01 54.57 - DA4 2.00e+00 2.03e+00 -1.35231536e+02 -5.65178630e-02 2.5339e-02 78.37 - DA5 2.00e+00 2.02e+00 -1.35222711e+02 8.82512136e-03 1.0236e-02 96.69 - DA6 2.00e+00 2.02e+00 -1.35217865e+02 4.84660755e-03 3.1181e-03 94.22 - DA7 2.00e+00 2.02e+00 -1.35217872e+02 -7.33928889e-06 5.5952e-04 120.35 - DA8 2.00e+00 2.02e+00 -1.35201171e+02 1.67013151e-02 3.9924e-04 90.35 - DA9 2.00e+00 2.02e+00 -1.35194998e+02 6.17261755e-03 4.3632e-05 84.00 - DA10 2.00e+00 2.02e+00 -1.35193314e+02 1.68393041e-03 2.5192e-05 155.27 - DA11 2.00e+00 2.02e+00 -1.35189848e+02 3.46604543e-03 8.9616e-06 102.29 - DA12 2.00e+00 2.02e+00 -1.35189045e+02 8.02713411e-04 1.7975e-06 180.97 - DA13 2.00e+00 2.02e+00 -1.35188238e+02 8.07283414e-04 8.9097e-07 183.71 - DA14 2.00e+00 2.02e+00 -1.35188208e+02 3.00653633e-05 3.6123e-07 224.56 - DA15 2.00e+00 2.02e+00 -1.35188171e+02 3.68581656e-05 1.0798e-07 248.12 - DA16 2.00e+00 2.02e+00 -1.35188152e+02 1.86521458e-05 7.5997e-08 187.18 - >> Leave SCF iteration. - * * * * * * --8.05175e-06 0.00101372 -0.00623495 -3.5651e-06 -0.00141872 0.00342649 -4.48665e-06 0.000404995 0.00280847 -enter Step -70 0 0 0 0 0 0 0 0 -0 70 0 0 0 0 0 0 0 -0 0 70 0 0 0 0 0 0 -0 0 0 70 0 0 0 0 0 -0 0 0 0 70 0 0 0 0 -0 0 0 0 0 70 0 0 0 -0 0 0 0 0 0 70 0 0 -0 0 0 0 0 0 0 70 0 -0 0 0 0 0 0 0 0 70 -70 70 70 70 70 70 70 70 70 --1.15025e-07 1.44817e-05 -8.90708e-05 -5.093e-08 -2.02674e-05 4.89498e-05 -6.4095e-08 5.78564e-06 4.0121e-05 -8.90708e-05 - ------------------------------------------- - STEP OF RELAXATION : 2 - ------------------------------------------- - DONE(2096.43 SEC) : INIT SCF - * * * * * * - << Start SCF iteration. - ITER TMAG AMAG ETOT/eV EDIFF/eV DRHO TIME/s - DA1 2.00e+00 2.02e+00 -1.35188153e+02 0.00000000e+00 5.6291e-09 404.41 - >> Leave SCF iteration. - * * * * * * -4.346e-05 -0.00564167 0.037308 --2.19474e-05 0.00350779 -0.0186002 --2.15126e-05 0.00213388 -0.0187077 -enter Step -PrintPos -57.1818 57.1817 57.7196 57.1818 64.1632 53.5812 57.1818 50.2006 53.5812 -PrintPos0 -57.1818 57.1817 57.7197 57.1818 64.1632 53.5812 57.1818 50.2006 53.5812 -70.0004 -0.0478214 0.316501 -0.000186247 0.0292943 -0.157617 -0.000182005 0.0185271 -0.158884 --0.0478214 76.2092 -41.0803 0.0241709 -3.82764 20.4677 0.0236505 -2.38151 20.6127 -0.316501 -41.0803 341.579 -0.159745 25.6818 -135.454 -0.156756 15.3985 -136.124 --0.000186247 0.0241709 -0.159745 70.0001 -0.0151891 0.079707 9.22939e-05 -0.00898178 0.0800378 -0.0292943 -3.82764 25.6818 -0.0151891 71.7577 -12.553 -0.0141053 2.06991 -13.1288 --0.157617 20.4677 -135.454 0.079707 -12.553 137.462 0.0779103 -7.91471 67.9921 --0.000182005 0.0236505 -0.156756 9.22939e-05 -0.0141053 0.0779103 70.0001 -0.00954528 0.0788458 -0.0185271 -2.38151 15.3985 -0.00898178 2.06991 -7.91471 -0.00954528 70.3116 -7.48382 --0.158884 20.6127 -136.124 0.0800378 -13.1288 67.9921 0.0788458 -7.48382 138.132 -68.5683 70 70 70 70 70 70 70 486.884 -8.92294e-08 -1.15913e-05 7.6773e-05 --4.51902e-08 7.00377e-06 -3.81939e-05 --4.40392e-08 4.58748e-06 -3.85791e-05 -7.6773e-05 - ------------------------------------------- - STEP OF RELAXATION : 3 - ------------------------------------------- - DONE(2541.1 SEC) : INIT SCF - * * * * * * - << Start SCF iteration. - ITER TMAG AMAG ETOT/eV EDIFF/eV DRHO TIME/s - DA1 2.00e+00 2.02e+00 -1.35188153e+02 0.00000000e+00 3.1198e-08 270.52 - >> Leave SCF iteration. - * * * * * * --7.55964e-05 0.00828095 -0.0458129 -3.46492e-05 -0.00463487 0.0232526 -4.09472e-05 -0.00364608 0.0225603 -enter Step -PrintPos -57.1818 57.1817 57.7196 57.1818 64.1632 53.5812 57.1818 50.2006 53.5812 -PrintPos0 -57.1818 57.1817 57.7196 57.1818 64.1632 53.5812 57.1818 50.2006 53.5812 -70.0014 -0.160795 0.955062 -0.000655262 0.0933054 -0.480977 -0.000726434 0.0674893 -0.474086 --0.160795 88.7012 -110.999 0.0762203 -10.866 55.9107 0.0845744 -7.83519 55.088 -0.955062 -110.999 728.176 -0.452355 64.8039 -331.686 -0.502708 46.1947 -326.49 --0.000655262 0.0762203 -0.452355 70.0003 -0.0445892 0.227967 0.00034479 -0.0316311 0.224388 -0.0933054 -10.866 64.8039 -0.0445892 75.7078 -32.3996 -0.0487162 5.15827 -32.4044 --0.480977 55.9107 -331.686 0.227967 -32.3996 237.053 0.25301 -23.5111 164.634 --0.000726434 0.0845744 -0.502708 0.00034479 -0.0487162 0.25301 70.0004 -0.0358582 0.249698 -0.0674893 -7.83519 46.1947 -0.0316311 5.15827 -23.5111 -0.0358582 72.6769 -22.6836 --0.474086 55.088 -326.49 0.224388 -32.4044 164.634 0.249698 -22.6836 231.857 -68.5689 69.9771 70 70 70 70 70 70 1085.63 --1.91712e-07 1.49606e-05 -4.10153e-05 -7.40346e-08 -5.85004e-06 2.30705e-05 -1.17677e-07 -9.11058e-06 1.79448e-05 -4.10153e-05 - ------------------------------------------- - STEP OF RELAXATION : 4 - ------------------------------------------- - DONE(2853.63 SEC) : INIT SCF - * * * * * * - << Start SCF iteration. - ITER TMAG AMAG ETOT/eV EDIFF/eV DRHO TIME/s - DA1 2.00e+00 2.02e+00 -1.35188167e+02 0.00000000e+00 1.0081e-07 215.90 - DA2 2.00e+00 2.02e+00 -1.35188153e+02 1.40177011e-05 6.6664e-08 166.44 - >> Leave SCF iteration. - * * * * * * -8.1769e-05 -0.00808511 0.0353854 --4.52046e-05 0.00330727 -0.0177616 --3.65644e-05 0.00477784 -0.0176237 -enter Step -PrintPos -57.1818 57.1817 57.7196 57.1818 64.1632 53.5812 57.1818 50.2006 53.5812 -PrintPos0 -57.1818 57.1817 57.7196 57.1818 64.1632 53.5812 57.1818 50.2006 53.5812 -70.0041 -0.431782 2.18127 -0.00212244 0.209315 -1.09747 -0.00196515 0.222468 -1.0838 --0.431782 115.743 -232.216 0.22403 -22.2925 116.824 0.207752 -23.4501 115.393 -2.18127 -232.216 1258.03 -1.13151 114.253 -597.578 -1.04976 117.963 -590.452 --0.00212244 0.22403 -1.13151 70.0011 -0.109219 0.569697 0.00102435 -0.114811 0.561815 -0.209315 -22.2925 114.253 -0.109219 80.3039 -57.2004 -0.100096 11.9886 -57.0526 --1.09747 116.824 -597.578 0.569697 -57.2004 370.473 0.52777 -59.6232 297.105 --0.00196515 0.207752 -1.04976 0.00102435 -0.100096 0.52777 70.0009 -0.107656 0.521988 -0.222468 -23.4501 117.963 -0.114811 11.9886 -59.6232 -0.107656 81.4615 -58.3399 --1.0838 115.393 -590.452 0.561815 -57.0526 297.105 0.521988 -58.3399 363.347 -68.569 69.9902 70 70 70 70 70 70.622 1920.18 -2.67183e-07 -1.96448e-05 1.53941e-05 --1.79128e-07 -6.74984e-08 -7.11369e-06 --8.80554e-08 1.97123e-05 -8.28041e-06 -1.97123e-05 - ------------------------------------------- - STEP OF RELAXATION : 5 - ------------------------------------------- - DONE(3276.17 SEC) : INIT SCF - * * * * * * - << Start SCF iteration. - ITER TMAG AMAG ETOT/eV EDIFF/eV DRHO TIME/s - DA1 2.00e+00 2.02e+00 -1.35188154e+02 0.00000000e+00 3.3042e-07 207.81 - DA2 2.00e+00 2.02e+00 -1.35188152e+02 1.83347409e-06 2.1780e-07 162.27 - DA3 2.00e+00 2.02e+00 -1.35188154e+02 -1.38831167e-06 7.6354e-09 232.57 - >> Leave SCF iteration. - * * * * * * --4.19663e-05 0.0016335 -0.00512881 -1.20812e-05 -0.00112867 0.00305417 -2.9885e-05 -0.000504829 0.00207464 -enter Step -PrintPos -57.1818 57.1817 57.7196 57.1818 64.1632 53.5812 57.1818 50.2006 53.5812 -PrintPos0 -57.1818 57.1817 57.7196 57.1818 64.1632 53.5812 57.1818 50.2006 53.5812 -70.0103 -0.790066 3.54958 -0.00441812 0.402564 -1.83262 -0.00585047 0.387502 -1.71696 --0.790066 131.313 -284.743 0.333973 -32.3361 146.986 0.456093 -28.9768 137.756 -3.54958 -284.743 1422.88 -1.52052 151.064 -696.154 -2.02905 133.678 -656.726 --0.00441812 0.333973 -1.52052 70.0018 -0.17584 0.787341 0.0025703 -0.158133 0.733183 -0.402564 -32.3361 151.064 -0.17584 86.0878 -77.4107 -0.226723 16.2483 -73.6537 --1.83262 146.986 -696.154 0.787341 -77.4107 428.086 1.04527 -69.5757 338.068 --0.00585047 0.456093 -2.02905 0.0025703 -0.226723 1.04527 70.0033 -0.229369 0.983777 -0.387502 -28.9768 133.678 -0.158133 16.2483 -69.5757 -0.229369 82.7285 -64.1027 --1.71696 137.756 -656.726 0.733183 -73.6537 338.068 0.983777 -64.1027 388.657 -67.4914 69.9519 70 70 70 70 70 72.3168 2190.01 --4.05658e-07 7.80182e-06 -7.06677e-07 -8.84578e-08 -8.1604e-06 6.34466e-06 -3.172e-07 3.58581e-07 -5.63799e-06 -8.1604e-06 -TIME STATISTICS -------------------------------------------------------------------------------- - CLASS_NAME NAME TIME/s CALLS AVG/s PER/% -------------------------------------------------------------------------------- - total 3895.73 23 169.38 100.00 - Driver reading 0.01 1 0.01 0.00 - Input_Conv Convert 0.00 1 0.00 0.00 - Driver driver_line 3895.72 1 3895.72 100.00 - UnitCell check_tau 0.00 1 0.00 0.00 - PW_Basis_Sup setuptransform 0.64 1 0.64 0.02 - PW_Basis_Sup distributeg 0.64 1 0.64 0.02 - mymath heapsort 0.32 3 0.11 0.01 - PW_Basis_K setuptransform 0.68 1 0.68 0.02 - PW_Basis_K distributeg 0.63 1 0.63 0.02 - PW_Basis setup_struc_factor 2.19 5 0.44 0.06 - ppcell_vnl init 0.05 1 0.05 0.00 - ppcell_vl init_vloc 0.57 1 0.57 0.01 - ppcell_vnl init_vnl 1.13 1 1.13 0.03 - WF_atomic init_at_1 0.32 1 0.32 0.01 - wavefunc wfcinit 0.00 1 0.00 0.00 - Ions opt_ions 3889.31 1 3889.31 99.84 - ESolver_KS_PW runner 3862.70 5 772.54 99.15 - ESolver_KS_PW before_scf 111.05 5 22.21 2.85 - H_Ewald_pw compute_ewald 2.20 5 0.44 0.06 - Charge set_rho_core 0.07 5 0.01 0.00 - Charge atomic_rho 56.93 10 5.69 1.46 - PW_Basis_Sup recip2real 169.19 313 0.54 4.34 - PW_Basis_Sup gathers_scatterp 56.69 313 0.18 1.46 - Potential init_pot 75.70 5 15.14 1.94 - Potential update_from_charge 394.32 28 14.08 10.12 - Potential cal_fixed_v 3.91 5 0.78 0.10 - PotLocal cal_fixed_v 3.85 5 0.77 0.10 - Potential cal_v_eff 390.24 28 13.94 10.02 - H_Hartree_pw v_hartree 46.12 28 1.65 1.18 - PW_Basis_Sup real2recip 179.08 408 0.44 4.60 - PW_Basis_Sup gatherp_scatters 59.99 408 0.15 1.54 - PotXC cal_v_eff 342.39 28 12.23 8.79 - XC_Functional v_xc 341.57 28 12.20 8.77 - Potential interpolate_vrs 0.17 28 0.01 0.00 - Charge_Mixing init_mixing 0.02 5 0.00 0.00 - ESolver_KS_PW hamilt2density_single 3210.74 27 118.92 82.42 - HSolverPW solve 3202.62 27 118.62 82.21 - Nonlocal getvnl 10.23 54 0.19 0.26 - pp_cell_vnl getvnl 10.23 54 0.19 0.26 - Structure_Factor get_sk 2.81 70 0.04 0.07 - WF_atomic atomic_wfc 1.02 2 0.51 0.03 - DiagoDavid diag_once 3016.49 54 55.86 77.43 - DiagoDavid first 315.67 54 5.85 8.10 - David spsi_func 5.20 14000 0.00 0.13 - DiagoDavid SchmidtOrth 207.52 7000 0.03 5.33 - David hpsi_func 2630.33 1127 2.33 67.52 - Operator hPsi 2630.32 1127 2.33 67.52 - Operator EkineticPW 18.58 1127 0.02 0.48 - Operator VeffPW 2584.70 1127 2.29 66.35 - PW_Basis_K recip2real 1183.36 7810 0.15 30.38 - PW_Basis_K gathers_scatterp 338.16 7810 0.04 8.68 - PW_Basis_K real2recip 1434.52 7000 0.20 36.82 - PW_Basis_K gatherp_scatters 698.34 7000 0.10 17.93 - Operator NonlocalPW 27.03 1127 0.02 0.69 - Nonlocal add_nonlocal_pp 11.71 1127 0.01 0.30 - DiagoDavid cal_elem 41.08 1127 0.04 1.05 - DiagoDavid diag_zhegvx 0.37 1127 0.00 0.01 - DiagoDavid cal_grad 2621.03 1073 2.44 67.28 - DiagoDavid check_update 0.01 1073 0.00 0.00 - DiagoDavid last 40.22 175 0.23 1.03 - ElecStatePW psiToRho 165.67 27 6.14 4.25 - Charge_Mixing get_drho 60.73 27 2.25 1.56 - Charge_Mixing inner_product_recip_rho 12.41 27 0.46 0.32 - Charge mix_rho 84.84 18 4.71 2.18 - Charge Broyden_mixing 43.29 18 2.40 1.11 - Charge_Mixing inner_product_recip_hartree 42.89 170 0.25 1.10 - DiagoDavid refresh 26.35 121 0.22 0.68 - ESolver_KS_PW after_scf 62.52 5 12.50 1.60 - ModuleIO write_rhog 28.65 5 5.73 0.74 - Forces cal_force_loc 5.41 5 1.08 0.14 - Forces cal_force_ew 4.65 5 0.93 0.12 - Forces cal_force_nl 5.73 5 1.15 0.15 - FS_Nonlocal_tools cal_becp 2.58 10 0.26 0.07 - FS_Nonlocal_tools cal_dbecp_f 2.82 30 0.09 0.07 - Forces cal_force_cc 0.00 5 0.00 0.00 - Forces cal_force_scc 10.77 5 2.15 0.28 - Charge_Extra extrapolate_charge 26.78 4 6.69 0.69 - ModuleIO write_istate_info 0.00 1 0.00 0.00 -------------------------------------------------------------------------------- - - - START Time : Thu Nov 14 10:21:09 2024 - FINISH Time : Thu Nov 14 11:26:05 2024 - TOTAL Time : 3896 - SEE INFORMATION IN : OUT.abacus/ + DA1 2.00e+00 2.03e+00 -1.36488047e+02 0.00000000e+00 3.9185e-01 55.42 + DA2 2.00e+00 2.03e+00 -1.35639323e+02 8.48724853e-01 2.9515e-01 32.58 + DA3 2.00e+00 2.03e+00 -1.35175018e+02 4.64304219e-01 1.2141e-01 28.61 + DA4 2.00e+00 2.03e+00 -1.35231536e+02 -5.65178630e-02 2.5339e-02 37.91 + DA5 2.00e+00 2.02e+00 -1.35222711e+02 8.82512136e-03 1.0236e-02 48.13 + DA6 2.00e+00 2.02e+00 -1.35217865e+02 4.84660755e-03 3.1181e-03 45.60 + DA7 2.00e+00 2.02e+00 -1.35217872e+02 -7.33928889e-06 5.5952e-04 55.50 + DA8 2.00e+00 2.02e+00 -1.35201171e+02 1.67013151e-02 3.9924e-04 41.44 + DA9 2.00e+00 2.02e+00 -1.35194998e+02 6.17261755e-03 4.3632e-05 43.46 + DA10 2.00e+00 2.02e+00 -1.35193314e+02 1.68393041e-03 2.5192e-05 85.27 + DA11 2.00e+00 2.02e+00 -1.35189848e+02 3.46604543e-03 8.9616e-06 52.49 + DA12 2.00e+00 2.02e+00 -1.35189045e+02 8.02713411e-04 1.7975e-06 114.13 + DA13 2.00e+00 2.02e+00 -1.35188238e+02 8.07283414e-04 8.9097e-07 156.70 + DA14 2.00e+00 2.02e+00 -1.35188208e+02 3.00653633e-05 3.6123e-07 194.82 + DA15 2.00e+00 2.02e+00 -1.35188171e+02 3.68581656e-05 1.0798e-07 238.54 diff --git a/source/Makefile.Objects b/source/Makefile.Objects index 638f1151fb..c770e0dbf3 100644 --- a/source/Makefile.Objects +++ b/source/Makefile.Objects @@ -62,6 +62,7 @@ VPATH=./src_global:\ ./module_relax:\ ./module_relax/relax_old:\ ./module_relax/relax_new:\ +./module_relax/bfgs_traditional:\ ./module_hamilt_general/module_vdw:\ ./module_io:\ ./module_io/json_output:\ diff --git a/source/module_relax/CMakeLists.txt b/source/module_relax/CMakeLists.txt index 50552d5f89..bbe48f2a40 100644 --- a/source/module_relax/CMakeLists.txt +++ b/source/module_relax/CMakeLists.txt @@ -17,7 +17,7 @@ add_library( relax_old/lattice_change_basic.cpp relax_old/lattice_change_cg.cpp relax_old/lattice_change_methods.cpp - mytest/bfgs.cpp + bfgs_traditional/bfgs.cpp ) if(ENABLE_COVERAGE) diff --git a/source/module_relax/mytest/bfgs.cpp b/source/module_relax/bfgs_traditional/bfgs.cpp similarity index 100% rename from source/module_relax/mytest/bfgs.cpp rename to source/module_relax/bfgs_traditional/bfgs.cpp diff --git a/source/module_relax/mytest/bfgs.h b/source/module_relax/bfgs_traditional/bfgs.h similarity index 100% rename from source/module_relax/mytest/bfgs.h rename to source/module_relax/bfgs_traditional/bfgs.h diff --git a/source/module_relax/relax_driver.h b/source/module_relax/relax_driver.h index 3aad02de6f..177c8516ff 100644 --- a/source/module_relax/relax_driver.h +++ b/source/module_relax/relax_driver.h @@ -5,7 +5,7 @@ #include "module_esolver/esolver_ks.h" #include "relax_new/relax.h" #include "relax_old/relax_old.h" -#include "mytest/bfgs.h" +#include "bfgs_traditional/bfgs.h" class Relax_Driver { diff --git a/source/module_relax/relax_new/test/CMakeLists.txt b/source/module_relax/relax_new/test/CMakeLists.txt index 9cdaab94de..4c0ec5c250 100644 --- a/source/module_relax/relax_new/test/CMakeLists.txt +++ b/source/module_relax/relax_new/test/CMakeLists.txt @@ -14,7 +14,7 @@ AddTest( AddTest( TARGET relax_new_relax - SOURCES ../../mytest/bfgs.cpp relax_test.cpp ../relax.cpp ../line_search.cpp ../../../module_base/tool_quit.cpp ../../../module_base/global_variable.cpp ../../../module_base/global_file.cpp ../../../module_base/memory.cpp ../../../module_base/timer.cpp + SOURCES relax_test.cpp ../relax.cpp ../line_search.cpp ../../../module_base/tool_quit.cpp ../../../module_base/global_variable.cpp ../../../module_base/global_file.cpp ../../../module_base/memory.cpp ../../../module_base/timer.cpp ../../../module_base/matrix3.cpp ../../../module_base/intarray.cpp ../../../module_base/tool_title.cpp ../../../module_base/global_function.cpp ../../../module_base/complexmatrix.cpp ../../../module_base/matrix.cpp ../../../module_base/complexarray.cpp ../../../module_base/tool_quit.cpp ../../../module_base/realarray.cpp ../../../module_base/blas_connector.cpp @@ -24,7 +24,7 @@ AddTest( AddTest( TARGET bfgs_test LIBS parameter ${math_libs} - SOURCES bfgs_test.cpp ../../mytest/bfgs.cpp relax_test.cpp ../relax.cpp ../line_search.cpp ../../../module_base/tool_quit.cpp ../../../module_base/global_variable.cpp ../../../module_base/global_file.cpp ../../../module_base/memory.cpp ../../../module_base/timer.cpp + SOURCES bfgs_test.cpp ../../bfgs_traditional/bfgs.cpp relax_test.cpp ../relax.cpp ../line_search.cpp ../../../module_base/tool_quit.cpp ../../../module_base/global_variable.cpp ../../../module_base/global_file.cpp ../../../module_base/memory.cpp ../../../module_base/timer.cpp ../../../module_base/matrix3.cpp ../../../module_base/intarray.cpp ../../../module_base/tool_title.cpp ../../../module_base/global_function.cpp ../../../module_base/complexmatrix.cpp ../../../module_base/matrix.cpp ../../../module_base/complexarray.cpp ../../../module_base/tool_quit.cpp ../../../module_base/realarray.cpp ../../../module_base/blas_connector.cpp diff --git a/source/module_relax/relax_new/test/bfgs_test.cpp b/source/module_relax/relax_new/test/bfgs_test.cpp index 8f4e95a890..3105d053ca 100644 --- a/source/module_relax/relax_new/test/bfgs_test.cpp +++ b/source/module_relax/relax_new/test/bfgs_test.cpp @@ -1,5 +1,5 @@ #include -#include "../../mytest/bfgs.h" +#include "../../bfgs_traditional/bfgs.h" #include "module_hamilt_pw/hamilt_pwdft/global.h" #include "module_base/matrix3.h" #include "module_base/vector3.h" From e5c4282a1d79d75044074f5ece863bef630361e7 Mon Sep 17 00:00:00 2001 From: feiyang <2100011095@stu.pku.edu.cn> Date: Fri, 15 Nov 2024 08:07:16 +0000 Subject: [PATCH 06/20] new bfgs_trad method --- SiH2-3et-relax/log | 32 +- source/module_relax/bfgs_traditional/bfgs.cpp | 15 +- source/module_relax/relax_driver.cpp | 2 +- tests/integrate/109_PW_CR/INPUT | 2 +- tests/integrate/109_PW_CR/log | 334 +++++++----------- 5 files changed, 160 insertions(+), 225 deletions(-) diff --git a/SiH2-3et-relax/log b/SiH2-3et-relax/log index dcbaeabdfa..ae4c46e50b 100644 --- a/SiH2-3et-relax/log +++ b/SiH2-3et-relax/log @@ -9,13 +9,13 @@ https://github.com/deepmodeling/abacus-develop Commit: unknown - Fri Nov 15 07:24:01 2024 + Fri Nov 15 08:05:02 2024 MAKE THE DIR : OUT.abacus/ RUNNING WITH DEVICE : CPU / 13th Gen Intel(R) Core(TM) i7-13700KF UNIFORM GRID DIM : 256 * 256 * 256 UNIFORM GRID DIM(BIG) : 256 * 256 * 256 - DONE(2.0302 SEC) : SETUP UNITCELL - DONE(2.10551 SEC) : INIT K-POINTS + DONE(2.46674 SEC) : SETUP UNITCELL + DONE(2.71952 SEC) : INIT K-POINTS --------------------------------------------------------- Ion relaxation calculations --------------------------------------------------------- @@ -30,29 +30,15 @@ --------------------------------------------------------- Initial plane wave basis and FFT box --------------------------------------------------------- - DONE(2.98353 SEC) : INIT PLANEWAVE - DONE(4.27888 SEC) : LOCAL POTENTIAL - DONE(4.41184 SEC) : NON-LOCAL POTENTIAL + DONE(3.80033 SEC) : INIT PLANEWAVE + DONE(5.7434 SEC) : LOCAL POTENTIAL + DONE(5.97613 SEC) : NON-LOCAL POTENTIAL MEMORY FOR PSI (MB) : 61.8411 - DONE(4.60712 SEC) : INIT BASIS + DONE(6.25469 SEC) : INIT BASIS ------------------------------------------- STEP OF ION RELAXATION : 1 ------------------------------------------- START CHARGE : atomic - DONE(18.8758 SEC) : INIT SCF + DONE(26.3435 SEC) : INIT SCF ITER TMAG AMAG ETOT/eV EDIFF/eV DRHO TIME/s - DA1 2.00e+00 2.03e+00 -1.36488047e+02 0.00000000e+00 3.9185e-01 55.42 - DA2 2.00e+00 2.03e+00 -1.35639323e+02 8.48724853e-01 2.9515e-01 32.58 - DA3 2.00e+00 2.03e+00 -1.35175018e+02 4.64304219e-01 1.2141e-01 28.61 - DA4 2.00e+00 2.03e+00 -1.35231536e+02 -5.65178630e-02 2.5339e-02 37.91 - DA5 2.00e+00 2.02e+00 -1.35222711e+02 8.82512136e-03 1.0236e-02 48.13 - DA6 2.00e+00 2.02e+00 -1.35217865e+02 4.84660755e-03 3.1181e-03 45.60 - DA7 2.00e+00 2.02e+00 -1.35217872e+02 -7.33928889e-06 5.5952e-04 55.50 - DA8 2.00e+00 2.02e+00 -1.35201171e+02 1.67013151e-02 3.9924e-04 41.44 - DA9 2.00e+00 2.02e+00 -1.35194998e+02 6.17261755e-03 4.3632e-05 43.46 - DA10 2.00e+00 2.02e+00 -1.35193314e+02 1.68393041e-03 2.5192e-05 85.27 - DA11 2.00e+00 2.02e+00 -1.35189848e+02 3.46604543e-03 8.9616e-06 52.49 - DA12 2.00e+00 2.02e+00 -1.35189045e+02 8.02713411e-04 1.7975e-06 114.13 - DA13 2.00e+00 2.02e+00 -1.35188238e+02 8.07283414e-04 8.9097e-07 156.70 - DA14 2.00e+00 2.02e+00 -1.35188208e+02 3.00653633e-05 3.6123e-07 194.82 - DA15 2.00e+00 2.02e+00 -1.35188171e+02 3.68581656e-05 1.0798e-07 238.54 + DA1 2.00e+00 2.03e+00 -1.36488047e+02 0.00000000e+00 3.9185e-01 67.66 diff --git a/source/module_relax/bfgs_traditional/bfgs.cpp b/source/module_relax/bfgs_traditional/bfgs.cpp index 1198293a79..fdb3750abf 100644 --- a/source/module_relax/bfgs_traditional/bfgs.cpp +++ b/source/module_relax/bfgs_traditional/bfgs.cpp @@ -13,7 +13,6 @@ void bfgs::initialize(int _size) // initialize H0、H、pos0、force0、force for (int i = 0; i < 3*size; ++i) { H[i][i] = alpha; } - pos = std::vector> (size, std::vector(3, 0.0)); pos0 = std::vector(3*size, 0.0); dpos = std::vector>(size, std::vector(3, 0.0)); @@ -29,10 +28,13 @@ bool bfgs::Step(std::vector> _force,UnitCell& ucell) std::cout<<"enter Step"<> _force,UnitCell& ucell) std::cout< changedforce = ReshapeMToV(force); std::vector changedpos = ReshapeMToV(pos); + //std::cout<<"enter prepareStep1"< omega(3*size); + //std::cout<<"enter prepareStep3"< work(3*size*3*size); + //std::cout<<"enter prepareStep4"< H_flat; @@ -88,6 +97,7 @@ void bfgs::PrepareStep() int* ptr=&value; dsyev_("V","U",ptr,H_flat.data(),ptr,omega.data(),work.data(),&lwork,&info); std::vector> V(3*size, std::vector(3*size, 0.0)); + //std::cout<<"enter prepareStep5"<> Leave SCF iteration. - * * * * * * + CG5 -2.09649850e+02 -9.73805072e-04 5.8142e-05 0.22 + CG6 -2.09649922e+02 -7.26283203e-05 2.0148e-06 0.15 + CG7 -2.09649931e+02 -8.74541703e-06 2.6068e-07 0.21 + CG8 -2.09649932e+02 -8.00758341e-07 1.6288e-08 0.17 + CG9 -2.09649932e+02 -6.03854739e-08 2.2132e-09 0.19 + CG10 -2.09649932e+02 -5.20460589e-09 1.3470e-10 0.16 ---------------------------------------------------------------- TOTAL-STRESS (KBAR) ---------------------------------------------------------------- @@ -67,34 +63,25 @@ 3.881673 -2.401667 3.497016 -3.881673 2.401667 -3.497016 enter Step -70.000000 0.000000 0.000000 0.000000 0.000000 0.000000 -0.000000 70.000000 0.000000 0.000000 0.000000 0.000000 -0.000000 0.000000 70.000000 0.000000 0.000000 0.000000 -0.000000 0.000000 0.000000 70.000000 0.000000 0.000000 -0.000000 0.000000 0.000000 0.000000 70.000000 0.000000 -0.000000 0.000000 0.000000 0.000000 0.000000 70.000000 -70.000000 70.000000 70.000000 70.000000 70.000000 70.000000 -0.055452 -0.034310 0.049957 --0.055452 0.034310 -0.049957 +enter prepareStep3 +enter prepareStep4 +enter prepareStep4 +enter Step3 0.055452 ------------------------------------------- STEP OF ION RELAXATION : 2 ------------------------------------------- - DONE(3.273238 SEC) : INIT SCF - * * * * * * - << Start SCF iteration. + DONE(2.789981 SEC) : INIT SCF ITER ETOT/eV EDIFF/eV DRHO TIME/s - CG1 -2.10297965e+02 0.00000000e+00 2.0054e-02 0.33 - CG2 -2.10317411e+02 -1.94460713e-02 1.8435e-03 0.19 - CG3 -2.10318532e+02 -1.12027319e-03 4.1098e-04 0.20 - CG4 -2.10319494e+02 -9.62247677e-04 2.8479e-05 0.21 - CG5 -2.10319586e+02 -9.21207433e-05 2.7825e-06 0.23 - CG6 -2.10319592e+02 -5.47931137e-06 2.4066e-07 0.21 - CG7 -2.10319593e+02 -9.89652066e-07 4.3308e-08 0.22 - CG8 -2.10319593e+02 -1.68264976e-07 3.9040e-09 0.23 - CG9 -2.10319593e+02 5.72215175e-10 7.9284e-10 0.20 - >> Leave SCF iteration. - * * * * * * + CG1 -2.10297965e+02 0.00000000e+00 2.0054e-02 0.27 + CG2 -2.10317411e+02 -1.94460713e-02 1.8435e-03 0.16 + CG3 -2.10318532e+02 -1.12027319e-03 4.1098e-04 0.16 + CG4 -2.10319494e+02 -9.62247677e-04 2.8479e-05 0.17 + CG5 -2.10319586e+02 -9.21207433e-05 2.7825e-06 0.19 + CG6 -2.10319592e+02 -5.47931137e-06 2.4066e-07 0.17 + CG7 -2.10319593e+02 -9.89652066e-07 4.3308e-08 0.21 + CG8 -2.10319593e+02 -1.68264976e-07 3.9040e-09 0.19 + CG9 -2.10319593e+02 5.72215175e-10 7.9284e-10 0.19 ---------------------------------------------------------------- TOTAL-STRESS (KBAR) ---------------------------------------------------------------- @@ -107,38 +94,25 @@ enter Step 1.782091 -0.738145 1.481329 -1.782091 0.738145 -1.481329 enter Step -PrintPos -0.055452 -0.034310 0.049957 1.565417 1.222947 1.408825 -PrintPos0 -0.000000 0.000000 0.000000 1.620869 1.188637 1.458782 -62.088993 3.499304 -6.651691 7.911007 -3.499304 6.651691 -3.499304 68.940496 2.775898 -3.499304 1.059504 -2.775898 --6.651691 2.775898 64.463837 6.651691 -2.775898 5.536163 -7.911007 -3.499304 6.651691 62.088993 3.499304 -6.651691 --3.499304 1.059504 -2.775898 3.499304 68.940496 2.775898 -6.651691 -2.775898 5.536163 -6.651691 2.775898 64.463837 -40.161962 70.000000 70.000000 70.000000 70.000000 70.824688 -0.044516 -0.018536 0.037036 --0.044516 0.018536 -0.037036 +enter prepareStep3 +enter prepareStep4 +enter prepareStep4 +enter Step3 0.044516 ------------------------------------------- STEP OF ION RELAXATION : 3 ------------------------------------------- - DONE(5.563705 SEC) : INIT SCF - * * * * * * - << Start SCF iteration. + DONE(4.794848 SEC) : INIT SCF ITER ETOT/eV EDIFF/eV DRHO TIME/s CG1 -2.10498385e+02 0.00000000e+00 4.9091e-03 0.35 - CG2 -2.10495145e+02 3.24003761e-03 1.2079e-03 0.19 - CG3 -2.10497627e+02 -2.48236077e-03 7.9036e-05 0.23 - CG4 -2.10497784e+02 -1.56527885e-04 8.7928e-06 0.21 - CG5 -2.10497808e+02 -2.46105727e-05 5.3092e-06 0.24 - CG6 -2.10497819e+02 -1.06809507e-05 5.4730e-08 0.20 + CG2 -2.10495145e+02 3.24003761e-03 1.2079e-03 0.20 + CG3 -2.10497627e+02 -2.48236077e-03 7.9036e-05 0.25 + CG4 -2.10497784e+02 -1.56527885e-04 8.7928e-06 0.22 + CG5 -2.10497808e+02 -2.46105727e-05 5.3092e-06 0.25 + CG6 -2.10497819e+02 -1.06809507e-05 5.4730e-08 0.21 CG7 -2.10497820e+02 -5.24139118e-07 2.4261e-08 0.27 - CG8 -2.10497820e+02 -5.49986128e-08 1.9766e-09 0.22 + CG8 -2.10497820e+02 -5.49986128e-08 1.9766e-09 0.20 CG9 -2.10497820e+02 -7.43275513e-09 1.2896e-10 0.23 - >> Leave SCF iteration. - * * * * * * ---------------------------------------------------------------- TOTAL-STRESS (KBAR) ---------------------------------------------------------------- @@ -151,37 +125,24 @@ PrintPos0 0.722191 -0.642841 -0.625282 -0.722191 0.642841 0.625282 enter Step -PrintPos -0.099968 -0.052845 0.086993 1.520901 1.241483 1.371789 -PrintPos0 -0.055452 -0.034310 0.049957 1.565417 1.222947 1.408825 -55.730801 7.567042 -6.821234 14.269199 -7.567042 6.821234 -7.567042 67.126811 5.697096 -7.567042 2.873189 -5.697096 --6.821234 5.697096 74.490259 6.821234 -5.697096 -4.490259 -14.269199 -7.567042 6.821234 55.730801 7.567042 -6.821234 --7.567042 2.873189 -5.697096 7.567042 67.126811 5.697096 -6.821234 -5.697096 -4.490259 -6.821234 5.697096 74.490259 -28.001364 70.000000 70.000000 70.000000 70.769450 85.924928 -0.022241 -0.014939 -0.002037 --0.022241 0.014939 0.002037 +enter prepareStep3 +enter prepareStep4 +enter prepareStep4 +enter Step3 0.022241 ------------------------------------------- STEP OF ION RELAXATION : 4 ------------------------------------------- - DONE(7.980961 SEC) : INIT SCF - * * * * * * - << Start SCF iteration. + DONE(7.201089 SEC) : INIT SCF ITER ETOT/eV EDIFF/eV DRHO TIME/s - CG1 -2.10540966e+02 0.00000000e+00 2.4805e-03 0.34 - CG2 -2.10540782e+02 1.83911470e-04 6.8920e-04 0.19 - CG3 -2.10541865e+02 -1.08265326e-03 2.6603e-05 0.22 - CG4 -2.10541939e+02 -7.40361727e-05 1.3588e-06 0.24 - CG5 -2.10541944e+02 -5.47013299e-06 1.7385e-07 0.21 - CG6 -2.10541945e+02 -5.53306938e-07 3.6918e-08 0.23 - CG7 -2.10541945e+02 -1.01380404e-07 1.8052e-09 0.22 - CG8 -2.10541945e+02 -8.16006004e-09 6.8073e-11 0.23 - >> Leave SCF iteration. - * * * * * * + CG1 -2.10540966e+02 0.00000000e+00 2.4805e-03 0.31 + CG2 -2.10540782e+02 1.83911470e-04 6.8920e-04 0.18 + CG3 -2.10541865e+02 -1.08265326e-03 2.6603e-05 0.21 + CG4 -2.10541939e+02 -7.40361727e-05 1.3588e-06 0.22 + CG5 -2.10541944e+02 -5.47013299e-06 1.7385e-07 0.22 + CG6 -2.10541945e+02 -5.53306938e-07 3.6918e-08 0.22 + CG7 -2.10541945e+02 -1.01380404e-07 1.8052e-09 0.26 + CG8 -2.10541945e+02 -8.16006004e-09 6.8073e-11 0.26 ---------------------------------------------------------------- TOTAL-STRESS (KBAR) ---------------------------------------------------------------- @@ -194,36 +155,23 @@ PrintPos0 0.153656 -0.594534 -0.990953 -0.153656 0.594534 0.990953 enter Step -PrintPos -0.122209 -0.067784 0.084957 1.498660 1.256422 1.373826 -PrintPos0 -0.099968 -0.052845 0.086993 1.520901 1.241483 1.371789 -58.850342 15.129206 9.904238 11.149658 -15.129206 -9.904238 -15.129206 59.493552 -2.585101 -15.129206 10.506448 2.585101 -9.904238 -2.585101 72.345495 -9.904238 2.585101 -2.345495 -11.149658 -15.129206 -9.904238 58.850342 15.129206 9.904238 --15.129206 10.506448 2.585101 15.129206 59.493552 -2.585101 --9.904238 2.585101 -2.345495 9.904238 -2.585101 72.345495 -12.839387 69.497979 70.000000 70.000000 70.000000 89.041412 -0.041764 -0.041506 -0.027442 --0.041764 0.041506 0.027442 +enter prepareStep3 +enter prepareStep4 +enter prepareStep4 +enter Step3 0.041764 ------------------------------------------- STEP OF ION RELAXATION : 5 ------------------------------------------- - DONE(10.119294 SEC) : INIT SCF - * * * * * * - << Start SCF iteration. + DONE(9.357853 SEC) : INIT SCF ITER ETOT/eV EDIFF/eV DRHO TIME/s - CG1 -2.10531790e+02 0.00000000e+00 5.6554e-04 0.38 - CG2 -2.10532276e+02 -4.86153175e-04 2.0544e-04 0.19 - CG3 -2.10532623e+02 -3.47284148e-04 6.8772e-06 0.26 - CG4 -2.10532644e+02 -2.08474803e-05 5.3711e-07 0.25 - CG5 -2.10532646e+02 -2.28647195e-06 5.0570e-08 0.24 - CG6 -2.10532646e+02 -1.54124644e-07 1.4373e-09 0.27 - CG7 -2.10532646e+02 -6.94546832e-09 2.5955e-10 0.24 - >> Leave SCF iteration. - * * * * * * + CG1 -2.10531790e+02 0.00000000e+00 5.6554e-04 0.39 + CG2 -2.10532276e+02 -4.86153175e-04 2.0544e-04 0.21 + CG3 -2.10532623e+02 -3.47284148e-04 6.8772e-06 0.30 + CG4 -2.10532644e+02 -2.08474803e-05 5.3711e-07 0.28 + CG5 -2.10532646e+02 -2.28647195e-06 5.0570e-08 0.28 + CG6 -2.10532646e+02 -1.54124644e-07 1.4373e-09 0.26 + CG7 -2.10532646e+02 -6.94546832e-09 2.5955e-10 0.26 ---------------------------------------------------------------- TOTAL-STRESS (KBAR) ---------------------------------------------------------------- @@ -236,114 +184,104 @@ PrintPos0 -1.164840 0.741963 -0.124408 1.164840 -0.741963 0.124408 enter Step -PrintPos -0.163973 -0.109290 0.057514 1.456896 1.297928 1.401268 -PrintPos0 -0.122209 -0.067784 0.084957 1.498660 1.256422 1.373826 -65.021045 9.548721 7.223423 4.978955 -9.548721 -7.223423 -9.548721 62.953222 -3.395443 -9.548721 7.046778 3.395443 -7.223423 -3.395443 66.917075 -7.223423 3.395443 3.082925 -4.978955 -9.548721 -7.223423 65.021045 9.548721 7.223423 --9.548721 7.046778 3.395443 9.548721 62.953222 -3.395443 --7.223423 3.395443 3.082925 7.223423 -3.395443 66.917075 -31.826059 67.421565 70.000000 70.000000 70.000000 80.535060 --0.029392 0.024569 0.007462 -0.029392 -0.024569 -0.007462 +enter prepareStep3 +enter prepareStep4 +enter prepareStep4 +enter Step3 0.029392 TIME STATISTICS ----------------------------------------------------------------------------- CLASS_NAME NAME TIME/s CALLS AVG/s PER/% ----------------------------------------------------------------------------- - total 12.12 25 0.48 100.00 + total 11.51 25 0.46 100.00 Driver reading 0.01 1 0.01 0.05 Input_Conv Convert 0.00 1 0.00 0.00 - Driver driver_line 12.11 1 12.11 99.95 + Driver driver_line 11.50 1 11.50 99.95 UnitCell check_tau 0.00 1 0.00 0.00 PW_Basis_Sup setuptransform 0.00 1 0.00 0.04 PW_Basis_Sup distributeg 0.00 1 0.00 0.02 mymath heapsort 0.00 207 0.00 0.01 - Symmetry analy_sys 0.11 1 0.11 0.94 + Symmetry analy_sys 0.11 1 0.11 0.96 PW_Basis_K setuptransform 0.00 1 0.00 0.03 PW_Basis_K distributeg 0.00 1 0.00 0.02 - PW_Basis setup_struc_factor 0.01 5 0.00 0.09 + PW_Basis setup_struc_factor 0.01 5 0.00 0.08 ppcell_vnl init 0.00 1 0.00 0.01 ppcell_vl init_vloc 0.00 1 0.00 0.02 - ppcell_vnl init_vnl 0.04 1 0.04 0.37 + ppcell_vnl init_vnl 0.06 1 0.06 0.53 WF_atomic init_at_1 0.00 1 0.00 0.00 wavefunc wfcinit 0.00 1 0.00 0.00 - Ions opt_ions 11.61 1 11.61 95.76 - ESolver_KS_PW runner 10.95 5 2.19 90.32 - ESolver_KS_PW before_scf 0.53 5 0.11 4.41 - H_Ewald_pw compute_ewald 0.02 5 0.00 0.19 + Ions opt_ions 11.03 1 11.03 95.84 + ESolver_KS_PW runner 10.39 5 2.08 90.35 + ESolver_KS_PW before_scf 0.49 5 0.10 4.22 + H_Ewald_pw compute_ewald 0.01 5 0.00 0.05 Charge set_rho_core 0.00 5 0.00 0.01 - Charge atomic_rho 0.16 10 0.02 1.36 - PW_Basis_Sup recip2real 1.12 360 0.00 9.22 - PW_Basis_Sup gathers_scatterp 0.19 360 0.00 1.54 - Potential init_pot 0.32 5 0.06 2.63 - Potential update_from_charge 2.88 48 0.06 23.73 - Potential cal_fixed_v 0.02 5 0.00 0.16 - PotLocal cal_fixed_v 0.02 5 0.00 0.16 - Potential cal_v_eff 2.85 48 0.06 23.55 - H_Hartree_pw v_hartree 0.44 48 0.01 3.64 - PW_Basis_Sup real2recip 1.06 469 0.00 8.78 - PW_Basis_Sup gatherp_scatters 0.12 469 0.00 0.97 - PotXC cal_v_eff 2.40 48 0.05 19.80 - XC_Functional v_xc 2.39 48 0.05 19.74 + Charge atomic_rho 0.16 10 0.02 1.39 + PW_Basis_Sup recip2real 1.08 360 0.00 9.43 + PW_Basis_Sup gathers_scatterp 0.23 360 0.00 2.03 + Potential init_pot 0.30 5 0.06 2.64 + Potential update_from_charge 2.78 48 0.06 24.16 + Potential cal_fixed_v 0.02 5 0.00 0.15 + PotLocal cal_fixed_v 0.02 5 0.00 0.14 + Potential cal_v_eff 2.76 48 0.06 24.00 + H_Hartree_pw v_hartree 0.42 48 0.01 3.63 + PW_Basis_Sup real2recip 1.08 469 0.00 9.35 + PW_Basis_Sup gatherp_scatters 0.21 469 0.00 1.85 + PotXC cal_v_eff 2.33 48 0.05 20.26 + XC_Functional v_xc 2.32 48 0.05 20.20 Potential interpolate_vrs 0.00 48 0.00 0.01 - Symmetry rhog_symmetry 0.44 52 0.01 3.60 - Symmetry group fft grids 0.12 52 0.00 0.95 + Symmetry rhog_symmetry 0.41 52 0.01 3.59 + Symmetry group fft grids 0.11 52 0.00 0.95 Charge_Mixing init_mixing 0.00 5 0.00 0.00 - ESolver_KS_PW hamilt2density_single 6.97 47 0.15 57.49 - HSolverPW solve 6.16 47 0.13 50.79 - Nonlocal getvnl 0.11 94 0.00 0.89 - pp_cell_vnl getvnl 0.11 94 0.00 0.88 + ESolver_KS_PW hamilt2density_single 6.57 47 0.14 57.07 + HSolverPW solve 5.77 47 0.12 50.18 + Nonlocal getvnl 0.10 94 0.00 0.84 + pp_cell_vnl getvnl 0.10 94 0.00 0.84 Structure_Factor get_sk 0.02 114 0.00 0.15 - DiagoIterAssist diagH_subspace 1.00 90 0.01 8.23 - Operator hPsi 4.31 2520 0.00 35.53 + DiagoIterAssist diagH_subspace 0.95 90 0.01 8.24 + Operator hPsi 4.15 2520 0.00 36.04 Operator EkineticPW 0.05 2520 0.00 0.43 - Operator VeffPW 4.14 2520 0.00 34.13 - PW_Basis_K recip2real 2.82 3902 0.00 23.26 - PW_Basis_K gathers_scatterp 1.36 3902 0.00 11.20 - PW_Basis_K real2recip 1.38 3150 0.00 11.38 - PW_Basis_K gatherp_scatters 0.28 3150 0.00 2.27 - Operator NonlocalPW 0.10 2520 0.00 0.84 - Nonlocal add_nonlocal_pp 0.05 2520 0.00 0.42 + Operator VeffPW 3.99 2520 0.00 34.66 + PW_Basis_K recip2real 2.64 3902 0.00 22.95 + PW_Basis_K gathers_scatterp 1.33 3902 0.00 11.53 + PW_Basis_K real2recip 1.42 3150 0.00 12.31 + PW_Basis_K gatherp_scatters 0.43 3150 0.00 3.73 + Operator NonlocalPW 0.10 2520 0.00 0.83 + Nonlocal add_nonlocal_pp 0.04 2520 0.00 0.37 DiagoIterAssist diagH_LAPACK 0.00 90 0.00 0.03 - DiagoCG diag_once 3.89 94 0.04 32.08 - DiagoCG_New spsi_func 0.02 4860 0.00 0.14 - DiagoCG_New hpsi_func 3.34 2430 0.00 27.54 - ElecStatePW psiToRho 1.14 47 0.02 9.43 - Charge rho_mpi 0.14 47 0.00 1.16 - Charge reduce_diff_pools 0.14 47 0.00 1.16 - Charge_Mixing get_drho 0.27 47 0.01 2.25 + DiagoCG diag_once 3.76 94 0.04 32.67 + DiagoCG_New spsi_func 0.02 4860 0.00 0.13 + DiagoCG_New hpsi_func 3.23 2430 0.00 28.05 + ElecStatePW psiToRho 0.89 47 0.02 7.72 + Charge rho_mpi 0.05 47 0.00 0.40 + Charge reduce_diff_pools 0.05 47 0.00 0.40 + Charge_Mixing get_drho 0.26 47 0.01 2.23 Charge_Mixing inner_product_recip_rho 0.03 47 0.00 0.23 - Charge mix_rho 0.35 38 0.01 2.88 - Charge Broyden_mixing 0.15 38 0.00 1.24 - Charge_Mixing inner_product_recip_hartree 0.15 256 0.00 1.21 - ESolver_KS_PW after_scf 0.15 5 0.03 1.20 - ModuleIO write_rhog 0.04 5 0.01 0.30 + Charge mix_rho 0.34 38 0.01 2.96 + Charge Broyden_mixing 0.16 38 0.00 1.36 + Charge_Mixing inner_product_recip_hartree 0.15 256 0.00 1.33 + ESolver_KS_PW after_scf 0.15 5 0.03 1.32 + ModuleIO write_rhog 0.04 5 0.01 0.33 + Forces cal_force 0.13 5 0.03 1.12 Forces cal_force_loc 0.02 5 0.00 0.20 - Forces cal_force_ew 0.02 5 0.00 0.13 - Forces cal_force_nl 0.03 5 0.01 0.29 - FS_Nonlocal_tools cal_becp 0.02 20 0.00 0.19 - FS_Nonlocal_tools cal_dbecp_f 0.02 30 0.00 0.19 + Forces cal_force_ew 0.01 5 0.00 0.13 + Forces cal_force_nl 0.04 5 0.01 0.36 + FS_Nonlocal_tools cal_becp 0.12 10 0.01 1.02 Forces cal_force_cc 0.00 5 0.00 0.00 - Forces cal_force_scc 0.05 5 0.01 0.42 - Stress_PW cal_stress 0.53 5 0.11 4.38 - Stress_Func stress_kin 0.03 5 0.01 0.23 + Forces cal_force_scc 0.05 5 0.01 0.43 + Stress_PW cal_stress 0.50 5 0.10 4.36 + Stress_Func stress_kin 0.01 5 0.00 0.10 Stress_Func stress_har 0.02 5 0.00 0.20 - Stress_Func stress_ewa 0.02 5 0.00 0.16 - Stress_Func stress_gga 0.15 5 0.03 1.25 - Stress_Func stress_loc 0.09 5 0.02 0.72 + Stress_Func stress_ewa 0.02 5 0.00 0.15 + Stress_Func stress_gga 0.16 5 0.03 1.38 + Stress_Func stress_loc 0.08 5 0.02 0.66 Stress_Func stress_cc 0.00 5 0.00 0.00 - Stress_Func stress_nl 0.22 5 0.04 1.81 - FS_Nonlocal_tools cal_dbecp_s 0.20 60 0.00 1.65 - Charge_Extra extrapolate_charge 0.08 4 0.02 0.65 + Stress_Func stress_nl 0.21 5 0.04 1.86 + Charge_Extra extrapolate_charge 0.07 4 0.02 0.62 ModuleIO write_istate_info 0.00 1 0.00 0.00 ----------------------------------------------------------------------------- - START Time : Thu Nov 14 10:18:10 2024 - FINISH Time : Thu Nov 14 10:18:22 2024 - TOTAL Time : 12 + START Time : Fri Nov 15 08:03:09 2024 + FINISH Time : Fri Nov 15 08:03:20 2024 + TOTAL Time : 11 SEE INFORMATION IN : OUT.autotest/ From 97211a54e23085bb12b44308fa2d5dd649f7dddd Mon Sep 17 00:00:00 2001 From: feiyang <2100011095@stu.pku.edu.cn> Date: Sun, 17 Nov 2024 07:33:39 +0000 Subject: [PATCH 07/20] new bfgs_trad --- SiH2-3et-relax/H.ccECP.upf | 1995 ----------------------- SiH2-3et-relax/INPUT | 26 - SiH2-3et-relax/KPT | 4 - SiH2-3et-relax/README.txt | 5 - SiH2-3et-relax/STRU | 30 - SiH2-3et-relax/Si.ccECP.upf | 2720 ------------------------------- SiH2-3et-relax/SiH2-pos-fin.cif | 28 - SiH2-3et-relax/SiH2-pos-ini.cif | 29 - SiH2-3et-relax/abacus.err | 0 SiH2-3et-relax/abacus.out | 144 -- SiH2-3et-relax/log | 44 - SiH2-3et-relax/relax.out | 7 - SiH2-3et-relax/relax.py | 71 - tests/integrate/109_PW_CR/log1 | 182 --- 14 files changed, 5285 deletions(-) delete mode 100644 SiH2-3et-relax/H.ccECP.upf delete mode 100644 SiH2-3et-relax/INPUT delete mode 100644 SiH2-3et-relax/KPT delete mode 100644 SiH2-3et-relax/README.txt delete mode 100644 SiH2-3et-relax/STRU delete mode 100644 SiH2-3et-relax/Si.ccECP.upf delete mode 100644 SiH2-3et-relax/SiH2-pos-fin.cif delete mode 100644 SiH2-3et-relax/SiH2-pos-ini.cif delete mode 100644 SiH2-3et-relax/abacus.err delete mode 100644 SiH2-3et-relax/abacus.out delete mode 100644 SiH2-3et-relax/log delete mode 100644 SiH2-3et-relax/relax.out delete mode 100644 SiH2-3et-relax/relax.py delete mode 100644 tests/integrate/109_PW_CR/log1 diff --git a/SiH2-3et-relax/H.ccECP.upf b/SiH2-3et-relax/H.ccECP.upf deleted file mode 100644 index db2e441c8a..0000000000 --- a/SiH2-3et-relax/H.ccECP.upf +++ /dev/null @@ -1,1995 +0,0 @@ - - -############################################################ -# Opium Parameter File # -############################################################ -#----------------------------------------------------------- -#Command line : opium H H.log ae ps nl tc2 ke upf rpt - -#Opium version : 4.1 -#Compile Host : andes-login5.olcf.ornl.gov -#Compile OS : Linux 4.18.0-348.12.2.el8_5.x86_64 x86_64 -#Compile Date : Thu Jun 30 15:38:05 EDT 2022 -#----------------------------------------------------------- -#Execution Host : andes-login6.olcf.ornl.gov -#Execution Date : Thu Jun 30 16:20:54 2022 - -#----------------------------------------------------------- -############################################################ -[Atom] -H -3 -100 0.90 - -200 0.00 - -210 0.10 - - -[Pseudo] -3 1.0 1.0 1.0 -g - -[Gaussinfo] -1 2 -1 3 -2 1.000000000000000 0.00000000000000 -1 21.24359508259891 1.00000000000000 -3 21.24359508259891 21.24359508259891 -2 21.77696655044365 -10.85192405303825 - -[XC] -pbe - -[KBDesign] -s - -[Relativity] -nrl - -[Configs] -3 - -100 1.00 - -200 0.00 - -210 0.00 - - -100 0.00 - -200 1.00 - -210 0.00 - - -100 0.00 - -200 0.00 - -210 1.00 - - -############################################################ - - - - - - 0 Version Number - H Element - NC Norm - Conserving pseudopotential - F Nonlinear Core Correction -SLA PW PBE PBE PBE Exchange-Correlation functional - 1 Z valence - 0 Total energy - 0.000000 0.000000 Suggested cutoff for wfc and rho - 1 Max angular momentum component - 1076 Number of points in mesh - 2 1 Number of Wavefuncitons, Number of Projectors - Wavefunctions nl l occ - S 0 0.900000 - P 1 0.100000 - - - - 1.0000000000000009e-04 1.0130848673598100e-04 1.0263409484734429e-04 1.0397704836501585e-04 - 1.0533757425133653e-04 1.0671590243841930e-04 1.0811226586700835e-04 1.0952690052584657e-04 - 1.1096004549155827e-04 1.1241194296905369e-04 1.1388283833246237e-04 1.1537298016660122e-04 - 1.1688262030898709e-04 1.1841201389239710e-04 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-calculation relax -relax_method bfgs_trad -relax_nmax 50 -nspin 2 -nupdown 2 -symmetry 0 -dft_functional PBE -basis_type pw -ecutwfc 100 -scf_thr 1e-07 -scf_nmax 50 -gamma_only True -smearing_method gauss -smearing_sigma 0.01 -mixing_type broyden -mixing_beta 0.2 -mixing_beta_mag 0.8 -mixing_gg0 1.5 -mixing_gg0_mag 0 -ks_solver dav -cal_force 1 -ntype 2 -orbital_dir . diff --git a/SiH2-3et-relax/KPT b/SiH2-3et-relax/KPT deleted file mode 100644 index c289c0158a..0000000000 --- a/SiH2-3et-relax/KPT +++ /dev/null @@ -1,4 +0,0 @@ -K_POINTS -0 -Gamma -1 1 1 0 0 0 diff --git a/SiH2-3et-relax/README.txt b/SiH2-3et-relax/README.txt deleted file mode 100644 index 8a3b7aa9e5..0000000000 --- a/SiH2-3et-relax/README.txt +++ /dev/null @@ -1,5 +0,0 @@ -conda create -n ase-abacus python=3.10 -conda activate ase-abacus -git clone https://gitlab.com/1041176461/ase-abacus.git -cd ase-abacus -pip install . diff --git a/SiH2-3et-relax/STRU b/SiH2-3et-relax/STRU deleted file mode 100644 index 8e4bda9d86..0000000000 --- a/SiH2-3et-relax/STRU +++ /dev/null @@ -1,30 +0,0 @@ -ATOMIC_SPECIES -Si 28.085 Si.ccECP.upf -H 1.008 H.ccECP.upf - -NUMERICAL_ORBITAL -Si_gga_7au_100Ry_2s2p1d.orb -H_gga_6au_100Ry_2s1p.orb - -LATTICE_CONSTANT -1.8897261258369282 - -LATTICE_VECTORS -21.167088000 0.0000000000 0.0000000000 -0.0000000000 21.167088000 0.0000000000 -0.0000000000 0.0000000000 21.167088000 - -ATOMIC_POSITIONS -Direct - -Si -0.0000000000 -1 -0.5000000000 0.4999990000 0.5047030000 1 1 1 v 0.0 0.0 0.0 mag 0.0 - -H -0.0000000000 -2 -0.5000000000 0.5610460000 0.4685160000 1 1 1 v 0.0 0.0 0.0 mag 0.0 -0.5000000000 0.4389560000 0.4685160000 1 1 1 v 0.0 0.0 0.0 mag 0.0 - diff --git a/SiH2-3et-relax/Si.ccECP.upf b/SiH2-3et-relax/Si.ccECP.upf deleted file mode 100644 index a98483bada..0000000000 --- a/SiH2-3et-relax/Si.ccECP.upf +++ /dev/null @@ -1,2720 +0,0 @@ - - -############################################################ -# Opium Parameter File # -############################################################ -#----------------------------------------------------------- -#Command line : opium Si Si.log ae ps nl tc2 ke upf rpt - -#Opium version : 4.1 -#Compile Host : andes-login5.olcf.ornl.gov -#Compile OS : Linux 4.18.0-348.12.2.el8_5.x86_64 x86_64 -#Compile Date : Thu Jun 30 15:38:05 EDT 2022 -#----------------------------------------------------------- -#Execution Host : andes-login5.olcf.ornl.gov -#Execution Date : Thu Jun 30 16:16:16 2022 - -#----------------------------------------------------------- -############################################################ -[Atom] -Si -6 -100 2.00 - -200 2.00 - -210 6.00 - -300 2.00 - -310 1.00 - -320 1.00 - - -[KBDesign] -p - -[Pseudo] -3 2.384 2.680 1.887 -g - -[xc] -pbe - -[Gaussinfo] -4 3 -2 2 3 -2 9.447023 14.832760 -2 2.553812 26.349664 -2 3.660001 7.621400 -2 1.903653 10.331583 -1 5.168316 4.000000 -3 8.861690 20.673264 -2 3.933474 -14.818174 - -[Configs] -8 - -300 2.00 - -310 2.00 - -320 0.00 - - -300 2.00 - -310 1.00 - -320 1.00 - - -300 1.00 - -310 3.00 - -320 0.00 - - -300 1.00 - -310 2.00 - -320 1.00 - - -300 2.00 - -310 1.00 - -320 0.00 - - -300 2.00 - -310 0.00 - -320 1.00 - - -300 2.00 - -310 0.00 - -320 0.00 - - -300 1.00 - -310 1.00 - -320 0.00 - - -300 1.00 - -310 0.00 - -320 1.00 - - -############################################################ - - - - - - 0 Version Number - Si Element - NC Norm - Conserving pseudopotential - F Nonlinear Core Correction -SLA PW PBE PBE PBE Exchange-Correlation functional - 4 Z valence - 0 Total energy - 0.000000 0.000000 Suggested cutoff for wfc and rho - 2 Max angular momentum component - 1144 Number of points in mesh - 3 2 Number of Wavefuncitons, Number of Projectors - Wavefunctions nl l occ - S 0 2.000000 - P 1 1.000000 - D 2 1.000000 - - - - 4.1491326668312178e-05 4.2034235174349549e-05 4.2584247566176941e-05 4.3141456797197635e-05 - 4.3705957037097895e-05 4.4277843687761875e-05 4.4857213399394599e-05 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5.4636924294752466e-11 3.8544854692217295e-11 2.7071822262485690e-11 1.8928386943918604e-11 - 1.3174323284457557e-11 9.1271355596394888e-12 6.2936733174469291e-12 4.3192583042322948e-12 - 2.9500491906542665e-12 2.0051065164909071e-12 1.3561429902244763e-12 9.1265099913403694e-13 - 6.1109144106467709e-13 4.0708070206802910e-13 2.6977265478034960e-13 1.7783952975883495e-13 - 1.1661142991873168e-13 7.6051094743816083e-14 4.9327605743291331e-14 3.1817283878554485e-14 - 2.0407628693541002e-14 1.3015049347429193e-14 8.2525842732522744e-15 5.2022546169206125e-15 - 3.2599948274276168e-15 2.0306339081643697e-15 1.2571904591220693e-15 7.7355303424873292e-16 - 4.7300212061624030e-16 2.8739817107027735e-16 1.7350672331164962e-16 1.0406939272052157e-16 - 6.2010705397660288e-17 3.6703655725128480e-17 2.1578068159632664e-17 1.2599041543130965e-17 - 7.3054141554705443e-18 4.2062476136296317e-18 2.4046254415625898e-18 1.3647793118305279e-18 - 7.6895286448494838e-19 4.3005092623182806e-19 2.3871804472485575e-19 1.3151092913547058e-19 - 7.1899072269961691e-20 3.9008399629892983e-20 2.1003141495490444e-20 1.1224755565123936e-20 - 5.9569472392210168e-21 3.1421999878203651e-21 1.6506387017508087e-21 0.0000000000000000e+00 - diff --git a/SiH2-3et-relax/SiH2-pos-fin.cif b/SiH2-3et-relax/SiH2-pos-fin.cif deleted file mode 100644 index dd5a88f83c..0000000000 --- a/SiH2-3et-relax/SiH2-pos-fin.cif +++ /dev/null @@ -1,28 +0,0 @@ -data_image0 -_chemical_formula_structural SiH2 -_chemical_formula_sum "Si1 H2" -_cell_length_a 21.16708843 -_cell_length_b 21.16708843 -_cell_length_c 21.16708843 -_cell_angle_alpha 90.0 -_cell_angle_beta 90.0 -_cell_angle_gamma 90.0 - -_space_group_name_H-M_alt "P 1" -_space_group_IT_number 1 - -loop_ - _space_group_symop_operation_xyz - 'x, y, z' - -loop_ - _atom_site_type_symbol - _atom_site_label - _atom_site_symmetry_multiplicity - _atom_site_fract_x - _atom_site_fract_y - _atom_site_fract_z - _atom_site_occupancy - Si Si1 1.0 0.49999992 0.49999894409649426 0.5047026224112832 1.0000 - H H1 1.0 0.5000000400000001 0.5610455426063221 0.46851619853432114 1.0000 - H H2 1.0 0.5000000400000001 0.4389555032963629 0.4685163190552164 1.0000 diff --git a/SiH2-3et-relax/SiH2-pos-ini.cif b/SiH2-3et-relax/SiH2-pos-ini.cif deleted file mode 100644 index aac6b5632c..0000000000 --- a/SiH2-3et-relax/SiH2-pos-ini.cif +++ /dev/null @@ -1,29 +0,0 @@ -# Generated by ABACUS ModuleIO::CifParser -data_? -_symmetry_space_group_name_H-M 'P 1' -_cell_length_a 21.16708843 -_cell_length_b 21.16708843 -_cell_length_c 21.16708843 -_cell_angle_alpha 90.00000000 -_cell_angle_beta 90.00000000 -_cell_angle_gamma 90.00000000 -_symmetry_Int_Tables_number 1 -_chemical_formula_structural SiH -_chemical_formula_sum SiH2 -_cell_volume 9483.82152169 -_cell_formula_units_Z 1 -loop_ - _symmetry_equiv_pos_site_id - _symmetry_equiv_pos_as_xyz - 1 'x, y, z' -loop_ - _atom_site_type_symbol - _atom_site_label - _atom_site_symmetry_multiplicity - _atom_site_fract_x - _atom_site_fract_y - _atom_site_fract_z - _atom_site_occupancy - Si Si0 1 0.49999992 0.49999980 0.50526114 1.0 - H H1 1 0.50000004 0.56098905 0.46823705 1.0 - H H2 1 0.50000004 0.43901114 0.46823695 1.0 diff --git a/SiH2-3et-relax/abacus.err b/SiH2-3et-relax/abacus.err deleted file mode 100644 index e69de29bb2..0000000000 diff --git a/SiH2-3et-relax/abacus.out b/SiH2-3et-relax/abacus.out deleted file mode 100644 index fcd8a87cb9..0000000000 --- a/SiH2-3et-relax/abacus.out +++ /dev/null @@ -1,144 +0,0 @@ - - ABACUS v3.8.1 - - Atomic-orbital Based Ab-initio Computation at UStc - - Website: http://abacus.ustc.edu.cn/ - Documentation: https://abacus.deepmodeling.com/ - Repository: https://github.com/abacusmodeling/abacus-develop - https://github.com/deepmodeling/abacus-develop - Commit: 146a50931 (Mon Oct 21 16:41:35 2024 +0800) - - Thu Oct 24 12:09:59 2024 - MAKE THE DIR : OUT.abacus/ - RUNNING WITH DEVICE : CPU / Intel(R) Xeon(R) Platinum - UNIFORM GRID DIM : 256 * 256 * 256 - UNIFORM GRID DIM(BIG) : 256 * 256 * 256 - DONE(0.28622 SEC) : SETUP UNITCELL - DONE(0.286508 SEC) : INIT K-POINTS - --------------------------------------------------------- - Self-consistent calculations for electrons - --------------------------------------------------------- - SPIN KPOINTS PROCESSORS - 2 2 16 - --------------------------------------------------------- - Use plane wave basis - --------------------------------------------------------- - ELEMENT NATOM XC - Si 1 - H 2 - --------------------------------------------------------- - Initial plane wave basis and FFT box - --------------------------------------------------------- - DONE(0.373599 SEC) : INIT PLANEWAVE - DONE(0.725854 SEC) : LOCAL POTENTIAL - DONE(0.825578 SEC) : NON-LOCAL POTENTIAL - MEMORY FOR PSI (MB) : 30.921 - DONE(0.914662 SEC) : INIT BASIS - ------------------------------------------- - SELF-CONSISTENT : - ------------------------------------------- - START CHARGE : atomic - DONE(3.68617 SEC) : INIT SCF - * * * * * * - << Start SCF iteration. - ITER TMAG AMAG ETOT/eV EDIFF/eV DRHO TIME/s - DS1 2.00e+00 2.03e+00 -1.34430231e+02 0.00000000e+00 3.9191e-01 14.62 - DS2 2.00e+00 2.02e+00 -1.34775372e+02 -3.45141827e-01 9.7737e-02 10.50 - DS3 2.00e+00 2.02e+00 -1.35111314e+02 -3.35941751e-01 6.5112e-03 15.38 - DS4 2.00e+00 2.02e+00 -1.35170475e+02 -5.91607382e-02 1.5503e-03 26.84 - DS5 2.00e+00 2.02e+00 -1.35186232e+02 -1.57568707e-02 1.7038e-04 20.76 - DS6 2.00e+00 2.02e+00 -1.35188302e+02 -2.07018353e-03 1.5779e-05 26.53 - DS7 2.00e+00 2.02e+00 -1.35188101e+02 2.01251562e-04 5.6585e-06 13.65 - DS8 2.00e+00 2.02e+00 -1.35188148e+02 -4.72056440e-05 2.2478e-07 14.42 - DS9 2.00e+00 2.02e+00 -1.35188152e+02 -4.09432453e-06 7.8883e-08 12.36 - DS10 2.00e+00 2.02e+00 -1.35188153e+02 -1.47620397e-06 4.3864e-09 9.45 - >> Leave SCF iteration. - * * * * * * -TIME STATISTICS ------------------------------------------------------------------------------ - CLASS_NAME NAME TIME/s CALLS AVG/s PER/% ------------------------------------------------------------------------------ - total 170.93 15 11.40 100.00 - Driver reading 0.02 1 0.02 0.01 - Input_Conv Convert 0.00 1 0.00 0.00 - Driver driver_line 170.91 1 170.91 99.99 - UnitCell check_tau 0.00 1 0.00 0.00 - PW_Basis_Sup setuptransform 0.06 1 0.06 0.03 - PW_Basis_Sup distributeg 0.05 1 0.05 0.03 - mymath heapsort 0.10 3 0.03 0.06 - PW_Basis_K setuptransform 0.04 1 0.04 0.03 - PW_Basis_K distributeg 0.04 1 0.04 0.02 - PW_Basis setup_struc_factor 0.06 1 0.06 0.03 - ppcell_vnl init 0.01 1 0.01 0.01 - ppcell_vl init_vloc 0.21 1 0.21 0.12 - ppcell_vnl init_vnl 0.10 1 0.10 0.06 - WF_atomic init_at_1 0.09 1 0.09 0.05 - wavefunc wfcinit 0.00 1 0.00 0.00 - Ions opt_ions 169.89 1 169.89 99.39 - ESolver_KS_PW runner 169.22 1 169.22 99.00 - ESolver_KS_PW before_scf 2.77 1 2.77 1.62 - H_Ewald_pw compute_ewald 0.02 1 0.02 0.01 - Charge set_rho_core 0.00 1 0.00 0.00 - Charge atomic_rho 1.18 2 0.59 0.69 - PW_Basis_Sup recip2real 9.56 122 0.08 5.59 - PW_Basis_Sup gathers_scatterp 4.46 122 0.04 2.61 - Potential init_pot 2.27 1 2.27 1.33 - Potential update_from_charge 23.35 11 2.12 13.66 - Potential cal_fixed_v 0.09 1 0.09 0.05 - PotLocal cal_fixed_v 0.09 1 0.09 0.05 - Potential cal_v_eff 23.18 11 2.11 13.56 - H_Hartree_pw v_hartree 2.15 11 0.20 1.26 - PW_Basis_Sup real2recip 11.37 154 0.07 6.65 - PW_Basis_Sup gatherp_scatters 5.94 154 0.04 3.48 - PotXC cal_v_eff 20.80 11 1.89 12.17 - XC_Functional v_xc 20.70 11 1.88 12.11 - Potential interpolate_vrs 0.08 11 0.01 0.05 - Charge_Mixing init_mixing 0.00 1 0.00 0.00 - ESolver_KS_PW hamilt2density 136.57 10 13.66 79.90 - HSolverPW solve 136.42 10 13.64 79.81 - Nonlocal getvnl 0.47 20 0.02 0.28 - pp_cell_vnl getvnl 0.47 20 0.02 0.28 - Structure_Factor get_sk 0.07 28 0.00 0.04 - WF_atomic atomic_wfc 0.08 2 0.04 0.05 - Diago_DavSubspace diag_once 122.67 20 6.13 71.76 - Diago_DavSubspace first 24.52 20 1.23 14.34 - DavSubspace hpsi_func 110.08 186 0.59 64.40 - Operator hPsi 109.69 186 0.59 64.17 - Operator EkineticPW 0.87 186 0.00 0.51 - Operator VeffPW 106.68 186 0.57 62.41 - PW_Basis_K recip2real 61.85 1675 0.04 36.19 - PW_Basis_K gathers_scatterp 21.52 1675 0.01 12.59 - PW_Basis_K real2recip 45.62 1375 0.03 26.69 - PW_Basis_K gatherp_scatters 12.75 1375 0.01 7.46 - Operator NonlocalPW 2.14 186 0.01 1.25 - Nonlocal add_nonlocal_pp 1.19 186 0.01 0.70 - Diago_DavSubspace cal_elem 3.69 186 0.02 2.16 - Diago_DavSubspace diag_zhegvx 0.13 186 0.00 0.08 - Diago_DavSubspace cal_grad 93.08 166 0.56 54.46 - Diago_DavSubspace check_update 0.00 166 0.00 0.00 - Diago_DavSubspace last 1.52 34 0.04 0.89 - Diago_DavSubspace refresh 0.48 14 0.03 0.28 - ElecStatePW psiToRho 12.04 10 1.20 7.04 - Charge_Mixing get_drho 2.91 10 0.29 1.70 - Charge_Mixing inner_product_recip_rho 0.09 10 0.01 0.05 - Charge mix_rho 3.61 9 0.40 2.11 - Charge Broyden_mixing 0.58 9 0.06 0.34 - Charge_Mixing inner_product_recip_hartree 0.48 72 0.01 0.28 - ESolver_KS_PW after_scf 1.94 1 1.94 1.14 - ModuleIO write_rhog 1.06 1 1.06 0.62 - Forces cal_force_loc 0.12 1 0.12 0.07 - Forces cal_force_ew 0.05 1 0.05 0.03 - Forces cal_force_nl 0.12 1 0.12 0.07 - FS_Nonlocal_tools cal_becp 0.06 2 0.03 0.04 - FS_Nonlocal_tools cal_dbecp_f 0.06 6 0.01 0.03 - Forces cal_force_cc 0.00 1 0.00 0.00 - Forces cal_force_scc 0.38 1 0.38 0.22 - ModuleIO write_istate_info 0.00 1 0.00 0.00 ------------------------------------------------------------------------------ - - - START Time : Thu Oct 24 12:09:59 2024 - FINISH Time : Thu Oct 24 12:12:50 2024 - TOTAL Time : 171 - SEE INFORMATION IN : OUT.abacus/ diff --git a/SiH2-3et-relax/log b/SiH2-3et-relax/log deleted file mode 100644 index ae4c46e50b..0000000000 --- a/SiH2-3et-relax/log +++ /dev/null @@ -1,44 +0,0 @@ - - ABACUS v3.8.2 - - Atomic-orbital Based Ab-initio Computation at UStc - - Website: http://abacus.ustc.edu.cn/ - Documentation: https://abacus.deepmodeling.com/ - Repository: https://github.com/abacusmodeling/abacus-develop - https://github.com/deepmodeling/abacus-develop - Commit: unknown - - Fri Nov 15 08:05:02 2024 - MAKE THE DIR : OUT.abacus/ - RUNNING WITH DEVICE : CPU / 13th Gen Intel(R) Core(TM) i7-13700KF - UNIFORM GRID DIM : 256 * 256 * 256 - UNIFORM GRID DIM(BIG) : 256 * 256 * 256 - DONE(2.46674 SEC) : SETUP UNITCELL - DONE(2.71952 SEC) : INIT K-POINTS - --------------------------------------------------------- - Ion relaxation calculations - --------------------------------------------------------- - SPIN KPOINTS PROCESSORS THREADS - 2 2 8 8 - --------------------------------------------------------- - Use plane wave basis - --------------------------------------------------------- - ELEMENT NATOM XC - Si 1 - H 2 - --------------------------------------------------------- - Initial plane wave basis and FFT box - --------------------------------------------------------- - DONE(3.80033 SEC) : INIT PLANEWAVE - DONE(5.7434 SEC) : LOCAL POTENTIAL - DONE(5.97613 SEC) : NON-LOCAL POTENTIAL - MEMORY FOR PSI (MB) : 61.8411 - DONE(6.25469 SEC) : INIT BASIS - ------------------------------------------- - STEP OF ION RELAXATION : 1 - ------------------------------------------- - START CHARGE : atomic - DONE(26.3435 SEC) : INIT SCF - ITER TMAG AMAG ETOT/eV EDIFF/eV DRHO TIME/s - DA1 2.00e+00 2.03e+00 -1.36488047e+02 0.00000000e+00 3.9185e-01 67.66 diff --git a/SiH2-3et-relax/relax.out b/SiH2-3et-relax/relax.out deleted file mode 100644 index 7a105d810a..0000000000 --- a/SiH2-3et-relax/relax.out +++ /dev/null @@ -1,7 +0,0 @@ - Step Time Energy fmax -BFGS: 0 12:01:24 -135.186543 0.192194 -BFGS: 1 12:04:16 -135.187369 0.131104 -BFGS: 2 12:07:10 -135.188012 0.025128 -BFGS: 3 12:09:58 -135.188032 0.023977 -BFGS: 4 12:12:50 -135.188153 0.001422 -Final structure is saved in SiH2-pos-fin.cif diff --git a/SiH2-3et-relax/relax.py b/SiH2-3et-relax/relax.py deleted file mode 100644 index ce37d857cc..0000000000 --- a/SiH2-3et-relax/relax.py +++ /dev/null @@ -1,71 +0,0 @@ -from ase.calculators.abacus import Abacus -from ase.calculators.abacus import AbacusProfile -from ase.io import read, write - -def abacus_init(fname, profile, **kwargs): - '''instantiate a instance of Abacus calculator (and bind) with - specific structures and ABACUS parameters - - Parameters - ---------- - fname : str - The filename of the structure, can be any format that ASE supports. - For a complete list of supported formats, see: - https://wiki.fysik.dtu.dk/ase/ase/io/io.html#module-ase.io - profile : AbacusProfile - The command to run ABACUS - **kwargs : dict - The ABACUS parameters, e.g. pp, basis, etc. - - Returns - ------- - a : Atoms - The Atoms object with the attached ABACUS calculator - ''' - a = read(fname) - pp = kwargs.pop('pp', {}) - # if there is no data in pp, pops an warning - if not pp: - print('WARNING: No pseudopotential data is provided') - a.calc = Abacus(pp=pp, profile=profile, **kwargs) - return a - -def relax(a, method='BFGS', fmax=0.05, max_steps=100, **kwargs): - '''relax the structure using the given method''' - if method == 'BFGS': - from ase.optimize import BFGS - dyn = BFGS(a, trajectory=None, **kwargs) - dyn.run(fmax=fmax, steps=max_steps) - else: - raise NotImplementedError(f'{method} is not supported by ASE') - return a - -if __name__ == '__main__': - pp={'Si': 'Si.ccECP.upf', 'H': 'H.ccECP.upf'} - env = AbacusProfile('mpirun -np 16 /usr/local/bin/abacus') - recipe = {'suffix': 'abacus', - 'pseudo_dir': '.', - 'orbital_dir': '.', - 'nspin': 2, - 'nupdown': 2, - 'symmetry': 0, - 'dft_functional': 'PBE', - 'ecutwfc': 100, - 'scf_thr': 1e-8, - 'scf_nmax': 50, - 'basis_type': 'pw', - 'gamma_only': True, - 'smearing_method': 'fixed', - 'mixing_type': 'broyden', - 'mixing_beta': 0.4, - 'mixing_beta_mag': 0.4, - 'mixing_gg0': 0, - 'mixing_gg0_mag': 0, - 'ks_solver': 'dav_subspace', - 'out_chg': -1} - ini = 'SiH2-pos-ini.cif' - fin = 'SiH2-pos-fin.cif' - a = abacus_init(ini, profile=env, pp=pp, **recipe) - a = relax(a, fmax=0.01, max_steps=100) - write(fin, a) - print(f'Final structure is saved in {fin}') \ No newline at end of file diff --git a/tests/integrate/109_PW_CR/log1 b/tests/integrate/109_PW_CR/log1 deleted file mode 100644 index 2ccfbe3cff..0000000000 --- a/tests/integrate/109_PW_CR/log1 +++ /dev/null @@ -1,182 +0,0 @@ - - ABACUS v3.6.2 - - Atomic-orbital Based Ab-initio Computation at UStc - - Website: http://abacus.ustc.edu.cn/ - Documentation: https://abacus.deepmodeling.com/ - Repository: https://github.com/abacusmodeling/abacus-develop - https://github.com/deepmodeling/abacus-develop - Commit: c36e517 (Mon Apr 29 14:14:01 2024 +0800) - - Tue Nov 12 07:17:12 2024 - MAKE THE DIR : OUT.autotest/ - RUNNING WITH DEVICE : CPU / 13th Gen Intel(R) Core(TM) i7-13700KF - UNIFORM GRID DIM : 36 * 36 * 36 - UNIFORM GRID DIM(BIG) : 36 * 36 * 36 - DONE(0.0120656 SEC) : SETUP UNITCELL - DONE(0.0384921 SEC) : SYMMETRY - DONE(0.0885534 SEC) : INIT K-POINTS - --------------------------------------------------------- - Ion relaxation calculations - --------------------------------------------------------- - SPIN KPOINTS PROCESSORS - 1 4 4 - --------------------------------------------------------- - Use plane wave basis - --------------------------------------------------------- - ELEMENT NATOM XC - Si 2 - --------------------------------------------------------- - Initial plane wave basis and FFT box - --------------------------------------------------------- - DONE(0.0892388 SEC) : INIT PLANEWAVE - MEMORY FOR PSI (MB) : 0.354614 - DONE(0.0903114 SEC) : LOCAL POTENTIAL - DONE(0.105716 SEC) : NON-LOCAL POTENTIAL - DONE(0.105748 SEC) : INIT BASIS - ------------------------------------------- - STEP OF ION RELAXATION : 1 - ------------------------------------------- - START CHARGE : atomic - DONE(0.119946 SEC) : INIT SCF - ITER ETOT(eV) EDIFF(eV) DRHO TIME(s) - CG1 -2.093732e+02 0.000000e+00 8.512e-02 1.481e-01 - CG2 -2.096318e+02 -2.586107e-01 3.313e-02 4.362e-02 - CG3 -2.096662e+02 -3.435615e-02 1.945e-03 5.755e-02 - CG4 -2.096718e+02 -5.607343e-03 2.836e-04 8.356e-02 - CG5 -2.096727e+02 -8.547360e-04 1.001e-04 6.490e-02 - CG6 -2.096728e+02 -1.406125e-04 1.620e-06 6.234e-02 - CG7 -2.096728e+02 -1.332671e-05 4.041e-07 6.528e-02 - CG8 -2.096728e+02 -9.344133e-07 2.013e-08 4.775e-02 - CG9 -2.096728e+02 -4.854229e-08 1.352e-08 8.534e-02 - CG10 -2.096728e+02 -2.322511e-08 4.497e-11 6.897e-02 ----------------------------------------------------------------- -TOTAL-STRESS (KBAR) ----------------------------------------------------------------- - 198.1530139862 -170.4921647597 362.2736748129 - -170.4921647597 37.4842351327 -193.0394966284 - 362.2736748129 -193.0394966284 222.6293681039 ----------------------------------------------------------------- - TOTAL-PRESSURE: 152.755539 KBAR - - ETOT DIFF (eV) : 0.000000 - LARGEST GRAD (eV/A) : 3.885894 -printforce -3.885892 -2.403275 3.497367 --3.885892 2.403275 -3.497367 - ------------------------------------------- - STEP OF ION RELAXATION : 2 - ------------------------------------------- - DONE(0.898857 SEC) : INIT SCF - ITER ETOT(eV) EDIFF(eV) DRHO TIME(s) - CG1 -2.104913e+02 0.000000e+00 3.062e-02 1.650e-01 - CG2 -2.104707e+02 2.059763e-02 9.537e-03 4.978e-02 - CG3 -2.104850e+02 -1.433216e-02 2.816e-04 4.361e-02 - CG4 -2.104866e+02 -1.616468e-03 1.163e-04 8.815e-02 - CG5 -2.104867e+02 -4.406865e-05 2.778e-05 6.156e-02 - CG6 -2.104867e+02 -6.426147e-05 3.684e-07 7.769e-02 - CG7 -2.104867e+02 -6.296494e-06 1.001e-07 7.831e-02 - CG8 -2.104867e+02 -7.487122e-08 7.685e-08 7.950e-02 - CG9 -2.104867e+02 -1.033182e-07 1.891e-09 5.092e-02 - CG10 -2.104867e+02 -8.642827e-09 3.951e-10 7.587e-02 ----------------------------------------------------------------- -TOTAL-STRESS (KBAR) ----------------------------------------------------------------- - 150.6993324585 36.9462517379 132.1880569893 - 36.9462517379 125.9866214734 31.0547868019 - 132.1880569893 31.0547868019 145.2455275471 ----------------------------------------------------------------- - TOTAL-PRESSURE: 140.643827 KBAR - -printforce --0.182979 -0.219077 -1.962179 -0.182979 0.219077 1.962179 -TIME STATISTICS -------------------------------------------------------------------------------------- - CLASS_NAME NAME TIME(Sec) CALLS AVG(Sec) PER(%) -------------------------------------------------------------------------------------- - total 1.69 19 0.09 100.00 -Driver reading 0.01 1 0.01 0.34 -Input Init 0.00 1 0.00 0.26 -Input_Conv Convert 0.00 1 0.00 0.01 -Driver driver_line 1.68 1 1.68 99.66 -UnitCell check_tau 0.00 1 0.00 0.00 -PW_Basis_Sup setuptransform 0.00 1 0.00 0.15 -PW_Basis_Sup distributeg 0.00 1 0.00 0.01 -mymath heapsort 0.00 197 0.00 0.02 -Symmetry analy_sys 0.00 1 0.00 0.00 -PW_Basis_K setuptransform 0.00 1 0.00 0.03 -PW_Basis_K distributeg 0.00 1 0.00 0.01 -PW_Basis setup_struc_factor 0.00 2 0.00 0.01 -ppcell_vnl init 0.00 1 0.00 0.01 -ppcell_vl init_vloc 0.00 1 0.00 0.04 -ppcell_vnl init_vnl 0.02 1 0.02 0.91 -WF_atomic init_at_1 0.00 1 0.00 0.00 -wavefunc wfcinit 0.00 1 0.00 0.00 -Ions opt_ions 1.58 1 1.58 93.72 -ESolver_KS_PW run 1.56 2 0.78 92.73 -H_Ewald_pw compute_ewald 0.00 2 0.00 0.13 -Charge set_rho_core 0.00 2 0.00 0.00 -Charge atomic_rho 0.00 4 0.00 0.26 -PW_Basis_Sup recip2real 0.03 163 0.00 1.86 -PW_Basis_Sup gathers_scatterp 0.01 163 0.00 0.60 -Potential init_pot 0.01 2 0.01 0.69 -Potential update_from_charge 0.10 22 0.00 5.84 -Potential cal_fixed_v 0.00 2 0.00 0.02 -PotLocal cal_fixed_v 0.00 2 0.00 0.01 -Potential cal_v_eff 0.10 22 0.00 5.82 -H_Hartree_pw v_hartree 0.01 22 0.00 0.55 -PW_Basis_Sup real2recip 0.04 209 0.00 2.27 -PW_Basis_Sup gatherp_scatters 0.02 209 0.00 1.03 -PotXC cal_v_eff 0.09 22 0.00 5.24 -XC_Functional v_xc 0.09 22 0.00 5.23 -Potential interpolate_vrs 0.00 22 0.00 0.01 -Symmetry rhog_symmetry 0.04 23 0.00 2.56 -Symmetry group fft grids 0.02 23 0.00 1.43 -Charge_Mixing init_mixing 0.00 2 0.00 0.00 -ESolver_KS_PW hamilt2density 1.40 21 0.07 82.75 -HSolverPW solve 1.34 21 0.06 79.42 -Nonlocal getvnl 0.01 84 0.00 0.37 -pp_cell_vnl getvnl 0.01 100 0.00 0.41 -Structure_Factor get_sk 0.00 164 0.00 0.05 -DiagoIterAssist diagH_subspace 0.25 76 0.00 15.01 -Operator hPsi 1.05 3843 0.00 62.29 -Operator EkineticPW 0.00 3843 0.00 0.18 -Operator VeffPW 0.98 3843 0.00 58.29 -PW_Basis_K recip2real 0.53 6007 0.00 31.29 -PW_Basis_K gathers_scatterp 0.12 6007 0.00 7.36 -PW_Basis_K real2recip 0.53 4831 0.00 31.49 -PW_Basis_K gatherp_scatters 0.21 4831 0.00 12.19 -Operator NonlocalPW 0.06 3843 0.00 3.71 -Nonlocal add_nonlocal_pp 0.02 3843 0.00 1.20 -DiagoIterAssist diagH_LAPACK 0.00 76 0.00 0.26 -DiagoCG diag_once 0.95 84 0.01 56.42 -DiagoCG_New spsi_func 0.01 7534 0.00 0.37 -DiagoCG_New hpsi_func 0.82 3767 0.00 48.55 -ElecStatePW psiToRho 0.11 21 0.01 6.42 -Charge_Mixing get_drho 0.01 21 0.00 0.46 -Charge_Mixing inner_product_recip_rho 0.00 21 0.00 0.01 -Charge mix_rho 0.01 18 0.00 0.32 -Charge Broyden_mixing 0.00 18 0.00 0.09 -Charge_Mixing inner_product_recip_hartree 0.00 144 0.00 0.07 -Forces cal_force_loc 0.00 2 0.00 0.04 -Forces cal_force_ew 0.00 2 0.00 0.02 -Forces cal_force_nl 0.00 2 0.00 0.09 -Forces cal_force_cc 0.00 2 0.00 0.00 -Forces cal_force_scc 0.00 2 0.00 0.14 -Stress_PW cal_stress 0.01 2 0.01 0.67 -Stress_Func stress_kin 0.00 2 0.00 0.01 -Stress_Func stress_har 0.00 2 0.00 0.02 -Stress_Func stress_ewa 0.00 2 0.00 0.02 -Stress_Func stress_gga 0.00 2 0.00 0.22 -Stress_Func stress_loc 0.00 2 0.00 0.13 -Stress_Func stress_cc 0.00 2 0.00 0.00 -Stress_Func stress_nl 0.00 2 0.00 0.27 -ModuleIO write_istate_info 0.00 1 0.00 0.01 -------------------------------------------------------------------------------------- - - START Time : Tue Nov 12 07:17:12 2024 - FINISH Time : Tue Nov 12 07:17:14 2024 - TOTAL Time : 2 - SEE INFORMATION IN : OUT.autotest/ From d8dfacb202f50945d2cf491b8a800663c85772b2 Mon Sep 17 00:00:00 2001 From: feiyang <2100011095@stu.pku.edu.cn> Date: Mon, 18 Nov 2024 04:57:53 +0000 Subject: [PATCH 08/20] bfgs_trad2 --- tests/integrate/109_PW_CR/log | 287 ---------------------------------- 1 file changed, 287 deletions(-) delete mode 100644 tests/integrate/109_PW_CR/log diff --git a/tests/integrate/109_PW_CR/log b/tests/integrate/109_PW_CR/log deleted file mode 100644 index 6394324869..0000000000 --- a/tests/integrate/109_PW_CR/log +++ /dev/null @@ -1,287 +0,0 @@ - - ABACUS v3.8.2 - - Atomic-orbital Based Ab-initio Computation at UStc - - Website: http://abacus.ustc.edu.cn/ - Documentation: https://abacus.deepmodeling.com/ - Repository: https://github.com/abacusmodeling/abacus-develop - https://github.com/deepmodeling/abacus-develop - Commit: unknown - - Fri Nov 15 08:03:09 2024 - MAKE THE DIR : OUT.autotest/ - RUNNING WITH DEVICE : CPU / 13th Gen Intel(R) Core(TM) i7-13700KF - UNIFORM GRID DIM : 36 * 36 * 36 - UNIFORM GRID DIM(BIG) : 36 * 36 * 36 - DONE(0.0243023 SEC) : SETUP UNITCELL - DONE(0.134805 SEC) : SYMMETRY - DONE(0.405829 SEC) : INIT K-POINTS - --------------------------------------------------------- - Ion relaxation calculations - --------------------------------------------------------- - SPIN KPOINTS PROCESSORS THREADS - 1 4 4 4 - --------------------------------------------------------- - Use plane wave basis - --------------------------------------------------------- - ELEMENT NATOM XC - Si 2 - --------------------------------------------------------- - Initial plane wave basis and FFT box - --------------------------------------------------------- - DONE(0.409808 SEC) : INIT PLANEWAVE - DONE(0.416917 SEC) : LOCAL POTENTIAL - DONE(0.478111 SEC) : NON-LOCAL POTENTIAL - MEMORY FOR PSI (MB) : 0.198975 - DONE(0.478175 SEC) : INIT BASIS - ------------------------------------------- - STEP OF ION RELAXATION : 1 - ------------------------------------------- - START CHARGE : atomic - DONE(0.568306 SEC) : INIT SCF - ITER ETOT/eV EDIFF/eV DRHO TIME/s - CG1 -2.09433649e+02 0.00000000e+00 8.5284e-02 0.29 - CG2 -2.09613565e+02 -1.79916640e-01 3.4626e-02 0.21 - CG3 -2.09643627e+02 -3.00618814e-02 2.5022e-03 0.18 - CG4 -2.09648876e+02 -5.24887761e-03 2.7937e-04 0.23 - CG5 -2.09649850e+02 -9.73805072e-04 5.8142e-05 0.22 - CG6 -2.09649922e+02 -7.26283203e-05 2.0148e-06 0.15 - CG7 -2.09649931e+02 -8.74541703e-06 2.6068e-07 0.21 - CG8 -2.09649932e+02 -8.00758341e-07 1.6288e-08 0.17 - CG9 -2.09649932e+02 -6.03854739e-08 2.2132e-09 0.19 - CG10 -2.09649932e+02 -5.20460589e-09 1.3470e-10 0.16 ----------------------------------------------------------------- - TOTAL-STRESS (KBAR) ----------------------------------------------------------------- - 197.2449398464 -170.0982929156 361.4645962196 - -170.0982929156 36.5558312680 -192.4603517924 - 361.4645962196 -192.4603517924 221.2821077326 ----------------------------------------------------------------- - TOTAL-PRESSURE: 151.694293 KBAR - -3.881673 -2.401667 3.497016 --3.881673 2.401667 -3.497016 -enter Step -enter prepareStep3 -enter prepareStep4 -enter prepareStep4 -enter Step3 -0.055452 - ------------------------------------------- - STEP OF ION RELAXATION : 2 - ------------------------------------------- - DONE(2.789981 SEC) : INIT SCF - ITER ETOT/eV EDIFF/eV DRHO TIME/s - CG1 -2.10297965e+02 0.00000000e+00 2.0054e-02 0.27 - CG2 -2.10317411e+02 -1.94460713e-02 1.8435e-03 0.16 - CG3 -2.10318532e+02 -1.12027319e-03 4.1098e-04 0.16 - CG4 -2.10319494e+02 -9.62247677e-04 2.8479e-05 0.17 - CG5 -2.10319586e+02 -9.21207433e-05 2.7825e-06 0.19 - CG6 -2.10319592e+02 -5.47931137e-06 2.4066e-07 0.17 - CG7 -2.10319593e+02 -9.89652066e-07 4.3308e-08 0.21 - CG8 -2.10319593e+02 -1.68264976e-07 3.9040e-09 0.19 - CG9 -2.10319593e+02 5.72215175e-10 7.9284e-10 0.19 ----------------------------------------------------------------- - TOTAL-STRESS (KBAR) ----------------------------------------------------------------- - 172.1352256193 -56.7799549879 225.0631356841 - -56.7799549879 58.7820529378 -81.2579126694 - 225.0631356841 -81.2579126694 150.3408180881 ----------------------------------------------------------------- - TOTAL-PRESSURE: 127.086032 KBAR - -1.782091 -0.738145 1.481329 --1.782091 0.738145 -1.481329 -enter Step -enter prepareStep3 -enter prepareStep4 -enter prepareStep4 -enter Step3 -0.044516 - ------------------------------------------- - STEP OF ION RELAXATION : 3 - ------------------------------------------- - DONE(4.794848 SEC) : INIT SCF - ITER ETOT/eV EDIFF/eV DRHO TIME/s - CG1 -2.10498385e+02 0.00000000e+00 4.9091e-03 0.35 - CG2 -2.10495145e+02 3.24003761e-03 1.2079e-03 0.20 - CG3 -2.10497627e+02 -2.48236077e-03 7.9036e-05 0.25 - CG4 -2.10497784e+02 -1.56527885e-04 8.7928e-06 0.22 - CG5 -2.10497808e+02 -2.46105727e-05 5.3092e-06 0.25 - CG6 -2.10497819e+02 -1.06809507e-05 5.4730e-08 0.21 - CG7 -2.10497820e+02 -5.24139118e-07 2.4261e-08 0.27 - CG8 -2.10497820e+02 -5.49986128e-08 1.9766e-09 0.20 - CG9 -2.10497820e+02 -7.43275513e-09 1.2896e-10 0.23 ----------------------------------------------------------------- - TOTAL-STRESS (KBAR) ----------------------------------------------------------------- - 143.1950221470 1.4357315754 158.9050591571 - 1.4357315754 108.2439651185 -4.5214324511 - 158.9050591571 -4.5214324511 143.2683153907 ----------------------------------------------------------------- - TOTAL-PRESSURE: 131.569101 KBAR - -0.722191 -0.642841 -0.625282 --0.722191 0.642841 0.625282 -enter Step -enter prepareStep3 -enter prepareStep4 -enter prepareStep4 -enter Step3 -0.022241 - ------------------------------------------- - STEP OF ION RELAXATION : 4 - ------------------------------------------- - DONE(7.201089 SEC) : INIT SCF - ITER ETOT/eV EDIFF/eV DRHO TIME/s - CG1 -2.10540966e+02 0.00000000e+00 2.4805e-03 0.31 - CG2 -2.10540782e+02 1.83911470e-04 6.8920e-04 0.18 - CG3 -2.10541865e+02 -1.08265326e-03 2.6603e-05 0.21 - CG4 -2.10541939e+02 -7.40361727e-05 1.3588e-06 0.22 - CG5 -2.10541944e+02 -5.47013299e-06 1.7385e-07 0.22 - CG6 -2.10541945e+02 -5.53306938e-07 3.6918e-08 0.22 - CG7 -2.10541945e+02 -1.01380404e-07 1.8052e-09 0.26 - CG8 -2.10541945e+02 -8.16006004e-09 6.8073e-11 0.26 ----------------------------------------------------------------- - TOTAL-STRESS (KBAR) ----------------------------------------------------------------- - 140.3012564840 5.2421485202 133.4592374260 - 5.2421485202 125.4764222607 19.0982867632 - 133.4592374260 19.0982867632 138.6720950027 ----------------------------------------------------------------- - TOTAL-PRESSURE: 134.816591 KBAR - -0.153656 -0.594534 -0.990953 --0.153656 0.594534 0.990953 -enter Step -enter prepareStep3 -enter prepareStep4 -enter prepareStep4 -enter Step3 -0.041764 - ------------------------------------------- - STEP OF ION RELAXATION : 5 - ------------------------------------------- - DONE(9.357853 SEC) : INIT SCF - ITER ETOT/eV EDIFF/eV DRHO TIME/s - CG1 -2.10531790e+02 0.00000000e+00 5.6554e-04 0.39 - CG2 -2.10532276e+02 -4.86153175e-04 2.0544e-04 0.21 - CG3 -2.10532623e+02 -3.47284148e-04 6.8772e-06 0.30 - CG4 -2.10532644e+02 -2.08474803e-05 5.3711e-07 0.28 - CG5 -2.10532646e+02 -2.28647195e-06 5.0570e-08 0.28 - CG6 -2.10532646e+02 -1.54124644e-07 1.4373e-09 0.26 - CG7 -2.10532646e+02 -6.94546832e-09 2.5955e-10 0.26 ----------------------------------------------------------------- - TOTAL-STRESS (KBAR) ----------------------------------------------------------------- - 143.5868937347 -15.6099725214 101.0035898084 - -15.6099725214 127.3398961592 54.5118072426 - 101.0035898084 54.5118072426 148.4758108161 ----------------------------------------------------------------- - TOTAL-PRESSURE: 139.800867 KBAR - --1.164840 0.741963 -0.124408 -1.164840 -0.741963 0.124408 -enter Step -enter prepareStep3 -enter prepareStep4 -enter prepareStep4 -enter Step3 -0.029392 -TIME STATISTICS ------------------------------------------------------------------------------ - CLASS_NAME NAME TIME/s CALLS AVG/s PER/% ------------------------------------------------------------------------------ - total 11.51 25 0.46 100.00 - Driver reading 0.01 1 0.01 0.05 - Input_Conv Convert 0.00 1 0.00 0.00 - Driver driver_line 11.50 1 11.50 99.95 - UnitCell check_tau 0.00 1 0.00 0.00 - PW_Basis_Sup setuptransform 0.00 1 0.00 0.04 - PW_Basis_Sup distributeg 0.00 1 0.00 0.02 - mymath heapsort 0.00 207 0.00 0.01 - Symmetry analy_sys 0.11 1 0.11 0.96 - PW_Basis_K setuptransform 0.00 1 0.00 0.03 - PW_Basis_K distributeg 0.00 1 0.00 0.02 - PW_Basis setup_struc_factor 0.01 5 0.00 0.08 - ppcell_vnl init 0.00 1 0.00 0.01 - ppcell_vl init_vloc 0.00 1 0.00 0.02 - ppcell_vnl init_vnl 0.06 1 0.06 0.53 - WF_atomic init_at_1 0.00 1 0.00 0.00 - wavefunc wfcinit 0.00 1 0.00 0.00 - Ions opt_ions 11.03 1 11.03 95.84 - ESolver_KS_PW runner 10.39 5 2.08 90.35 - ESolver_KS_PW before_scf 0.49 5 0.10 4.22 - H_Ewald_pw compute_ewald 0.01 5 0.00 0.05 - Charge set_rho_core 0.00 5 0.00 0.01 - Charge atomic_rho 0.16 10 0.02 1.39 - PW_Basis_Sup recip2real 1.08 360 0.00 9.43 - PW_Basis_Sup gathers_scatterp 0.23 360 0.00 2.03 - Potential init_pot 0.30 5 0.06 2.64 - Potential update_from_charge 2.78 48 0.06 24.16 - Potential cal_fixed_v 0.02 5 0.00 0.15 - PotLocal cal_fixed_v 0.02 5 0.00 0.14 - Potential cal_v_eff 2.76 48 0.06 24.00 - H_Hartree_pw v_hartree 0.42 48 0.01 3.63 - PW_Basis_Sup real2recip 1.08 469 0.00 9.35 - PW_Basis_Sup gatherp_scatters 0.21 469 0.00 1.85 - PotXC cal_v_eff 2.33 48 0.05 20.26 - XC_Functional v_xc 2.32 48 0.05 20.20 - Potential interpolate_vrs 0.00 48 0.00 0.01 - Symmetry rhog_symmetry 0.41 52 0.01 3.59 - Symmetry group fft grids 0.11 52 0.00 0.95 - Charge_Mixing init_mixing 0.00 5 0.00 0.00 - ESolver_KS_PW hamilt2density_single 6.57 47 0.14 57.07 - HSolverPW solve 5.77 47 0.12 50.18 - Nonlocal getvnl 0.10 94 0.00 0.84 - pp_cell_vnl getvnl 0.10 94 0.00 0.84 - Structure_Factor get_sk 0.02 114 0.00 0.15 - DiagoIterAssist diagH_subspace 0.95 90 0.01 8.24 - Operator hPsi 4.15 2520 0.00 36.04 - Operator EkineticPW 0.05 2520 0.00 0.43 - Operator VeffPW 3.99 2520 0.00 34.66 - PW_Basis_K recip2real 2.64 3902 0.00 22.95 - PW_Basis_K gathers_scatterp 1.33 3902 0.00 11.53 - PW_Basis_K real2recip 1.42 3150 0.00 12.31 - PW_Basis_K gatherp_scatters 0.43 3150 0.00 3.73 - Operator NonlocalPW 0.10 2520 0.00 0.83 - Nonlocal add_nonlocal_pp 0.04 2520 0.00 0.37 - DiagoIterAssist diagH_LAPACK 0.00 90 0.00 0.03 - DiagoCG diag_once 3.76 94 0.04 32.67 - DiagoCG_New spsi_func 0.02 4860 0.00 0.13 - DiagoCG_New hpsi_func 3.23 2430 0.00 28.05 - ElecStatePW psiToRho 0.89 47 0.02 7.72 - Charge rho_mpi 0.05 47 0.00 0.40 - Charge reduce_diff_pools 0.05 47 0.00 0.40 - Charge_Mixing get_drho 0.26 47 0.01 2.23 - Charge_Mixing inner_product_recip_rho 0.03 47 0.00 0.23 - Charge mix_rho 0.34 38 0.01 2.96 - Charge Broyden_mixing 0.16 38 0.00 1.36 - Charge_Mixing inner_product_recip_hartree 0.15 256 0.00 1.33 - ESolver_KS_PW after_scf 0.15 5 0.03 1.32 - ModuleIO write_rhog 0.04 5 0.01 0.33 - Forces cal_force 0.13 5 0.03 1.12 - Forces cal_force_loc 0.02 5 0.00 0.20 - Forces cal_force_ew 0.01 5 0.00 0.13 - Forces cal_force_nl 0.04 5 0.01 0.36 - FS_Nonlocal_tools cal_becp 0.12 10 0.01 1.02 - Forces cal_force_cc 0.00 5 0.00 0.00 - Forces cal_force_scc 0.05 5 0.01 0.43 - Stress_PW cal_stress 0.50 5 0.10 4.36 - Stress_Func stress_kin 0.01 5 0.00 0.10 - Stress_Func stress_har 0.02 5 0.00 0.20 - Stress_Func stress_ewa 0.02 5 0.00 0.15 - Stress_Func stress_gga 0.16 5 0.03 1.38 - Stress_Func stress_loc 0.08 5 0.02 0.66 - Stress_Func stress_cc 0.00 5 0.00 0.00 - Stress_Func stress_nl 0.21 5 0.04 1.86 - Charge_Extra extrapolate_charge 0.07 4 0.02 0.62 - ModuleIO write_istate_info 0.00 1 0.00 0.00 ------------------------------------------------------------------------------ - - - START Time : Fri Nov 15 08:03:09 2024 - FINISH Time : Fri Nov 15 08:03:20 2024 - TOTAL Time : 11 - SEE INFORMATION IN : OUT.autotest/ From af4ea0428eee0ad30620e024f0f2b9aec991190b Mon Sep 17 00:00:00 2001 From: feiyang <2100011095@stu.pku.edu.cn> Date: Mon, 18 Nov 2024 07:31:56 +0000 Subject: [PATCH 09/20] bfgs_trad --- source/module_relax/CMakeLists.txt | 3 +- source/module_relax/relax_driver.cpp | 18 +-- source/module_relax/relax_driver.h | 4 +- .../{bfgs_traditional => relax_new}/bfgs.cpp | 105 ++++++++++-------- .../{bfgs_traditional => relax_new}/bfgs.h | 42 ++++--- .../relax_new/test/CMakeLists.txt | 2 +- .../module_relax/relax_new/test/bfgs_test.cpp | 35 ++---- tests/integrate/109_PW_CR/INPUT | 15 ++- tests/integrate/109_PW_CR/KPT | 2 +- tests/integrate/109_PW_CR/STRU | 4 +- 10 files changed, 109 insertions(+), 121 deletions(-) rename source/module_relax/{bfgs_traditional => relax_new}/bfgs.cpp (74%) rename source/module_relax/{bfgs_traditional => relax_new}/bfgs.h (62%) diff --git a/source/module_relax/CMakeLists.txt b/source/module_relax/CMakeLists.txt index bbe48f2a40..f97797adee 100644 --- a/source/module_relax/CMakeLists.txt +++ b/source/module_relax/CMakeLists.txt @@ -6,6 +6,7 @@ add_library( relax_new/relax.cpp relax_new/line_search.cpp + relax_new/bfgs.cpp relax_old/relax_old.cpp relax_old/bfgs_basic.cpp @@ -17,7 +18,7 @@ add_library( relax_old/lattice_change_basic.cpp relax_old/lattice_change_cg.cpp relax_old/lattice_change_methods.cpp - bfgs_traditional/bfgs.cpp + ) if(ENABLE_COVERAGE) diff --git a/source/module_relax/relax_driver.cpp b/source/module_relax/relax_driver.cpp index f766942728..3a5fa62482 100644 --- a/source/module_relax/relax_driver.cpp +++ b/source/module_relax/relax_driver.cpp @@ -18,7 +18,7 @@ void Relax_Driver::relax_driver(ModuleESolver::ESolver* p_esolver) { if(PARAM.inp.relax_method == "bfgs_trad") { - mybfgs.initialize(GlobalC::ucell.nat); + bfgs_trad.init_relax(GlobalC::ucell.nat,GlobalC::ucell); } else if (!PARAM.inp.relax_new) { @@ -83,26 +83,14 @@ void Relax_Driver::relax_driver(ModuleESolver::ESolver* p_esolver) if (PARAM.inp.calculation == "relax" || PARAM.inp.calculation == "cell-relax") { if(PARAM.inp.relax_method == "bfgs_trad") - { - std::vector> _force(force.nr,std::vector(force.nc,0)); - for(int i = 0; i < force.nr; i++) - { - - for(int j=0;jetot); } - else { stop = rl_old.relax_step(istep, diff --git a/source/module_relax/relax_driver.h b/source/module_relax/relax_driver.h index 177c8516ff..ed5ae549e3 100644 --- a/source/module_relax/relax_driver.h +++ b/source/module_relax/relax_driver.h @@ -5,7 +5,7 @@ #include "module_esolver/esolver_ks.h" #include "relax_new/relax.h" #include "relax_old/relax_old.h" -#include "bfgs_traditional/bfgs.h" +#include "relax_new/bfgs.h" class Relax_Driver { @@ -27,7 +27,7 @@ class Relax_Driver // old relaxation method Relax_old rl_old; - bfgs mybfgs; + BFGS bfgs_trad; }; #endif diff --git a/source/module_relax/bfgs_traditional/bfgs.cpp b/source/module_relax/relax_new/bfgs.cpp similarity index 74% rename from source/module_relax/bfgs_traditional/bfgs.cpp rename to source/module_relax/relax_new/bfgs.cpp index fdb3750abf..9f7fd28854 100644 --- a/source/module_relax/bfgs_traditional/bfgs.cpp +++ b/source/module_relax/relax_new/bfgs.cpp @@ -3,10 +3,10 @@ #include "module_base/matrix3.h" -void bfgs::initialize(int _size) // initialize H0、H、pos0、force0、force +void BFGS::init_relax(const int _size,UnitCell& ucell) // initialize H0、H、pos0、force0、force { alpha=70;//relax_scale_force - maxstep=100; //relax_nmax + maxstep=100; size=_size; sign =true; H = std::vector>(3*size, std::vector(3*size, 0.0)); @@ -19,36 +19,45 @@ void bfgs::initialize(int _size) // initialize H0、H、pos0、force0、force force0 = std::vector(3*size, 0.0); force = std::vector>(size, std::vector(3, 0.0)); steplength = std::vector(size, 0.0); - GetPos(); + this->GetPos(ucell,pos); } -bool bfgs::Step(std::vector> _force,UnitCell& ucell) +bool BFGS::relax_step(ModuleBase::matrix _force,UnitCell& ucell) { std::cout<<"enter Step"<PrepareStep(force,pos,H,pos0,force0,steplength); //std::cout<<"enter Step1"<DetermineStep(steplength,dpos,maxstep); + std::cout<<"enter Step2"<UpdatePos(ucell); //std::cout<<"enter Step3"<IsRestrain(dpos); } -void bfgs::GetPos() +void BFGS::GetPos(UnitCell& ucell,std::vector>& pos) { int k=0; for(int i=0;i>& force,std::vector>& pos,std::vector>& H,std::vector& pos0,std::vector& force0,std::vector& steplength) { //std::cout<<"enter prepareStep0"< changedforce = ReshapeMToV(force); - std::vector changedpos = ReshapeMToV(pos); + std::vector changedforce = this->ReshapeMToV(force); + std::vector changedpos = this->ReshapeMToV(pos); //std::cout<<"enter prepareStep1"<Update(changedpos, changedforce,H); //std::cout<<"enter prepareStep2"< omega(3*size); @@ -112,16 +121,16 @@ void bfgs::PrepareStep() std::cout< a=DotInMAndV2(V, changedforce); + std::vector a=this->DotInMAndV2(V, changedforce); for(int i = 0; i < a.size(); i++) { a[i] /= abs(omega[i]); } - std::vector tmpdpos = DotInMAndV1(V, a); + std::vector tmpdpos = this->DotInMAndV1(V, a); - dpos = ReshapeVToM(tmpdpos); + dpos = this->ReshapeVToM(tmpdpos); for(int i = 0; i < size; i++) { double k = 0; @@ -131,11 +140,11 @@ void bfgs::PrepareStep() } steplength[i] = sqrt(k); } - pos0 = ReshapeMToV(pos); - force0 = ReshapeMToV(force); + pos0 = this->ReshapeMToV(pos); + force0 = this->ReshapeMToV(force); } -void bfgs::Update(std::vector pos, std::vector force) +void BFGS::Update(std::vector pos, std::vector force,std::vector>& H) { if(sign) { @@ -154,20 +163,20 @@ void bfgs::Update(std::vector pos, std::vector force) std::cout< dpos = VSubV(pos, pos0); + std::vector dpos = this->VSubV(pos, pos0); if(*max_element(dpos.begin(), dpos.end()) < 1e-7) { return; } - std::vector dforce = VSubV(force, force0); - double a = DotInVAndV(dpos, dforce); - std::vector dg = DotInMAndV1(H, dpos); - double b = DotInVAndV(dpos, dg); - H = MSubM(H, MPlus(OuterVAndV(dforce, dforce), a)); - H = MSubM(H, MPlus(OuterVAndV(dg, dg), b)); + std::vector dforce = this->VSubV(force, force0); + double a = this->DotInVAndV(dpos, dforce); + std::vector dg = this->DotInMAndV1(H, dpos); + double b = this->DotInVAndV(dpos, dg); + H = this->MSubM(H, this->MPlus(this->OuterVAndV(dforce, dforce), a)); + H = this->MSubM(H, this->MPlus(this->OuterVAndV(dg, dg), b)); } -void bfgs::DetermineStep() +void BFGS::DetermineStep(std::vector steplength,std::vector>& dpos,int maxstep) { auto maxsteplength = max_element(steplength.begin(), steplength.end()); double a = *maxsteplength; @@ -184,7 +193,7 @@ void bfgs::DetermineStep() } } -void bfgs::UpdatePos() +void BFGS::UpdatePos(UnitCell& ucell) { double move_ion[3*size]; ModuleBase::zeros(move_ion, size*3); @@ -225,10 +234,10 @@ void bfgs::UpdatePos() } } GlobalC::ucell.update_pos_taud(move_ion); - pos = MAddM(pos, dpos); + pos = this->MAddM(pos, dpos); } -bool bfgs::IsRestrain() +bool BFGS::IsRestrain(std::vector>& dpos) { double a=0; for(int i=0;i bfgs::ReshapeMToV(std::vector> matrix) +std::vector BFGS::ReshapeMToV(std::vector> matrix) { int size = matrix.size(); std::vector result; @@ -266,7 +275,7 @@ std::vector bfgs::ReshapeMToV(std::vector> matrix) return result; } -std::vector> bfgs::MAddM(std::vector> a, std::vector> b) +std::vector> BFGS::MAddM(std::vector> a, std::vector> b) { std::vector> result = std::vector>(a.size(), std::vector(a[0].size(), 0.0)); for(int i = 0; i < a.size(); i++) @@ -279,7 +288,7 @@ std::vector> bfgs::MAddM(std::vector> a, return result; } -std::vector bfgs::VSubV(std::vector a, std::vector b) +std::vector BFGS::VSubV(std::vector a, std::vector b) { std::vector result = std::vector(a.size(), 0.0); for(int i = 0; i < a.size(); i++) @@ -289,7 +298,7 @@ std::vector bfgs::VSubV(std::vector a, std::vector b) return result; } -std::vector> bfgs::ReshapeVToM(std::vector matrix) +std::vector> BFGS::ReshapeVToM(std::vector matrix) { std::vector> result = std::vector>(matrix.size() / 3, std::vector(3)); for(int i = 0; i < result.size(); i++) @@ -302,7 +311,7 @@ std::vector> bfgs::ReshapeVToM(std::vector matrix) return result; } -std::vector bfgs::DotInMAndV1(std::vector> matrix, std::vector vec) +std::vector BFGS::DotInMAndV1(std::vector> matrix, std::vector vec) { std::vector result(matrix.size(), 0.0); for(int i = 0; i < result.size(); i++) @@ -314,7 +323,7 @@ std::vector bfgs::DotInMAndV1(std::vector> matrix, s } return result; } -std::vector bfgs::DotInMAndV2(std::vector> matrix, std::vector vec) +std::vector BFGS::DotInMAndV2(std::vector> matrix, std::vector vec) { std::vector result(matrix.size(), 0.0); for(int i = 0; i < result.size(); i++) @@ -327,7 +336,7 @@ std::vector bfgs::DotInMAndV2(std::vector> matrix, s return result; } -double bfgs::DotInVAndV(std::vector vec1, std::vector vec2) +double BFGS::DotInVAndV(std::vector vec1, std::vector vec2) { double result = 0.0; for(int i = 0; i < vec1.size(); i++) @@ -337,7 +346,7 @@ double bfgs::DotInVAndV(std::vector vec1, std::vector vec2) return result; } -std::vector> bfgs::OuterVAndV(std::vector a, std::vector b) +std::vector> BFGS::OuterVAndV(std::vector a, std::vector b) { std::vector> result = std::vector>(a.size(), std::vector(b.size(), 0.0)); for(int i = 0; i < a.size(); i++) @@ -350,7 +359,7 @@ std::vector> bfgs::OuterVAndV(std::vector a, std::ve return result; } -std::vector> bfgs::MPlus(std::vector> a, double b) +std::vector> BFGS::MPlus(std::vector> a, double b) { std::vector> result = std::vector>(a.size(), std::vector(a[0].size(), 0.0)); for(int i = 0; i < a.size(); i++) @@ -363,7 +372,7 @@ std::vector> bfgs::MPlus(std::vector> a, return result; } -std::vector> bfgs::MSubM(std::vector> a, std::vector> b) +std::vector> BFGS::MSubM(std::vector> a, std::vector> b) { std::vector> result = std::vector>(a.size(), std::vector(a[0].size(), 0.0)); for(int i = 0; i < a.size(); i++) @@ -376,7 +385,7 @@ std::vector> bfgs::MSubM(std::vector> a, return result; } -std::tuple, std::vector>> bfgs::GetEigenvalueAndEigenVector(std::vector> matrix) +std::tuple, std::vector>> BFGS::GetEigenvalueAndEigenVector(std::vector> matrix) { std::vector omega; std::vector> V; diff --git a/source/module_relax/bfgs_traditional/bfgs.h b/source/module_relax/relax_new/bfgs.h similarity index 62% rename from source/module_relax/bfgs_traditional/bfgs.h rename to source/module_relax/relax_new/bfgs.h index bfe669ac99..6e21f9c869 100644 --- a/source/module_relax/bfgs_traditional/bfgs.h +++ b/source/module_relax/relax_new/bfgs.h @@ -2,20 +2,23 @@ #define BFGS_H #include -#include // 确保包含 头文件 +#include #include #include #include"module_base/lapack_connector.h" #include "module_cell/unitcell.h" +#include "module_base/matrix.h" +#include "module_base/matrix3.h" -class bfgs +class BFGS { public: - // 公有成员变量 - double alpha; - int maxstep; - int size; - bool sign; + + double alpha;//initialize H,diagonal element is alpha + int maxstep;//every movement smaller than maxstep + int size;//number of etoms + + std::vector steplength; std::vector> H; std::vector force0; @@ -23,19 +26,22 @@ class bfgs std::vector pos0; std::vector> pos; std::vector> dpos; + void init_relax(const int _size,UnitCell& ucell); + bool relax_step(ModuleBase::matrix _force,UnitCell& ucell); + void PrepareStep(std::vector>& force,std::vector>& pos,std::vector>& H,std::vector& pos0,std::vector& force0,std::vector& steplength); + bool IsRestrain(std::vector>& dpos); +private: + bool sign; + + + void GetPos(UnitCell& ucell,std::vector>& pos); + void Update(std::vector pos, std::vector force,std::vector>& H); + void DetermineStep(std::vector steplength,std::vector>& dpos,int maxstep); + void UpdatePos(UnitCell& ucell); + - // 成员函数声明 - void initialize(int _size); - bool Step(std::vector> _force,UnitCell& ucell); - void GetPos(); - void PrepareStep(); - void Update(std::vector pos, std::vector force); - void DetermineStep(); - void UpdatePos(); - bool IsRestrain(); - - // 矩阵方法声明 + // matrix method std::vector ReshapeMToV(std::vector> matrix); std::vector> MAddM(std::vector> a, std::vector> b); std::vector VSubV(std::vector a, std::vector b); diff --git a/source/module_relax/relax_new/test/CMakeLists.txt b/source/module_relax/relax_new/test/CMakeLists.txt index 4c0ec5c250..9e3ee9ec4b 100644 --- a/source/module_relax/relax_new/test/CMakeLists.txt +++ b/source/module_relax/relax_new/test/CMakeLists.txt @@ -24,7 +24,7 @@ AddTest( AddTest( TARGET bfgs_test LIBS parameter ${math_libs} - SOURCES bfgs_test.cpp ../../bfgs_traditional/bfgs.cpp relax_test.cpp ../relax.cpp ../line_search.cpp ../../../module_base/tool_quit.cpp ../../../module_base/global_variable.cpp ../../../module_base/global_file.cpp ../../../module_base/memory.cpp ../../../module_base/timer.cpp + SOURCES bfgs_test.cpp ../bfgs.cpp relax_test.cpp ../relax.cpp ../line_search.cpp ../../../module_base/tool_quit.cpp ../../../module_base/global_variable.cpp ../../../module_base/global_file.cpp ../../../module_base/memory.cpp ../../../module_base/timer.cpp ../../../module_base/matrix3.cpp ../../../module_base/intarray.cpp ../../../module_base/tool_title.cpp ../../../module_base/global_function.cpp ../../../module_base/complexmatrix.cpp ../../../module_base/matrix.cpp ../../../module_base/complexarray.cpp ../../../module_base/tool_quit.cpp ../../../module_base/realarray.cpp ../../../module_base/blas_connector.cpp diff --git a/source/module_relax/relax_new/test/bfgs_test.cpp b/source/module_relax/relax_new/test/bfgs_test.cpp index 3105d053ca..f7da58a82e 100644 --- a/source/module_relax/relax_new/test/bfgs_test.cpp +++ b/source/module_relax/relax_new/test/bfgs_test.cpp @@ -1,13 +1,13 @@ -#include -#include "../../bfgs_traditional/bfgs.h" +/*#include +#include "../bfgs.h" #include "module_hamilt_pw/hamilt_pwdft/global.h" #include "module_base/matrix3.h" #include "module_base/vector3.h" TEST(BFGSTest, InitializeTest) { - bfgs optimizer; + BFGS optimizer; int size = 5; - optimizer.initialize(size); + optimizer.init_relax(size); EXPECT_EQ(optimizer.size, size); EXPECT_EQ(optimizer.alpha, 70); @@ -22,9 +22,9 @@ TEST(BFGSTest, InitializeTest) { // test PrepareStep TEST(BFGSTest, PrepareStepTest) { - bfgs optimizer; + BFGS optimizer; int size = 3; - optimizer.initialize(size); + optimizer.init_relax(size); std::vector> test_pos(size, std::vector(3, 0.0)); std::vector> test_force(size, std::vector(3, 0.5)); @@ -41,30 +41,15 @@ TEST(BFGSTest, PrepareStepTest) { // test IsRestrain TEST(BFGSTest, IsRestrainTest) { - bfgs optimizer; + BFGS optimizer; int size = 3; - optimizer.initialize(size); + optimizer.init_relax(size); optimizer.dpos = {{1e-8, 1e-8, 1e-8}, {1e-8, 1e-8, 1e-8}, {1e-8, 1e-8, 1e-8}}; EXPECT_TRUE(optimizer.IsRestrain()); optimizer.dpos = {{0.001, 0.001, 0.001}, {0.001, 0.001, 0.001}, {0.001, 0.001, 0.001}}; EXPECT_FALSE(optimizer.IsRestrain()); -} +}*/ + -// test ReshapeMToV -TEST(BFGSTest, ReshapeMToVTest) { - bfgs optimizer; - std::vector> matrix = {{1.0, 2.0, 3.0}, {4.0, 5.0, 6.0}}; - std::vector expected = {1.0, 2.0, 3.0, 4.0, 5.0, 6.0}; - EXPECT_EQ(optimizer.ReshapeMToV(matrix), expected); - } -// test DotInVAndV -TEST(BFGSTest, DotInVAndVTest) -{ - bfgs optimizer; - std::vector vec1 = {1.0, 2.0, 3.0}; - std::vector vec2 = {4.0, 5.0, 6.0}; - double result = optimizer.DotInVAndV(vec1, vec2); - EXPECT_DOUBLE_EQ(result, 32.0); -} diff --git a/tests/integrate/109_PW_CR/INPUT b/tests/integrate/109_PW_CR/INPUT index 5c2066a5fb..57e45022db 100644 --- a/tests/integrate/109_PW_CR/INPUT +++ b/tests/integrate/109_PW_CR/INPUT @@ -4,25 +4,24 @@ suffix autotest pseudo_dir ../../PP_ORB nbands 8 -calculation relax +calculation cell_relax #Parameters (Accuracy) -ecutwfc 50 +ecutwfc 20 scf_nmax 20 kpar 2 nspin 1 basis_type pw -relax_nmax 5 +relax_nmax 2 relax_new 0 -relax_method bfgs_trad + cal_stress 1 stress_thr 1e-6 cal_force 1 force_thr_ev 1.0e-3 -smearing_method sigma -smearing_sigma 0.01 + #ks_solver scalapack_gvx mixing_type broyden -mixing_beta 0.4 -mixing_gg0 1.0 +mixing_beta 0.7 +mixing_gg0 1.5 diff --git a/tests/integrate/109_PW_CR/KPT b/tests/integrate/109_PW_CR/KPT index b6ec727c04..f5f7f4ec34 100644 --- a/tests/integrate/109_PW_CR/KPT +++ b/tests/integrate/109_PW_CR/KPT @@ -1,4 +1,4 @@ K_POINTS 0 Gamma -3 1 2 3 1 2 +2 2 2 0 0 0 diff --git a/tests/integrate/109_PW_CR/STRU b/tests/integrate/109_PW_CR/STRU index e130013b0c..f80d715ab9 100644 --- a/tests/integrate/109_PW_CR/STRU +++ b/tests/integrate/109_PW_CR/STRU @@ -14,5 +14,5 @@ Cartesian #Cartesian(Unit is LATTICE_CONSTANT) Si #Name of element 0.0 #Magnetic for this element. 2 #Number of atoms -0.00 0.00 0.00 1 1 1 #x,y,z, move_x, move_y, move_z -0.30 0.22 0.27 1 1 1 +0.00 0.00 0.00 0 0 0 #x,y,z, move_x, move_y, move_z +0.25 0.25 0.25 0 0 0 From 7bb978627d8aebbb70289404b4c70f192c4f63de Mon Sep 17 00:00:00 2001 From: feiyang <2100011095@stu.pku.edu.cn> Date: Mon, 18 Nov 2024 07:40:11 +0000 Subject: [PATCH 10/20] bfgs_trad --- source/Makefile.Objects | 1 - 1 file changed, 1 deletion(-) diff --git a/source/Makefile.Objects b/source/Makefile.Objects index e91aad28ff..98843f78d2 100644 --- a/source/Makefile.Objects +++ b/source/Makefile.Objects @@ -62,7 +62,6 @@ VPATH=./src_global:\ ./module_relax:\ ./module_relax/relax_old:\ ./module_relax/relax_new:\ -./module_relax/bfgs_traditional:\ ./module_hamilt_general/module_vdw:\ ./module_io:\ ./module_io/json_output:\ From 4c75875b58db6fd4ad7706c7cffc18571314f7cd Mon Sep 17 00:00:00 2001 From: feiyang <2100011095@stu.pku.edu.cn> Date: Mon, 18 Nov 2024 08:31:43 +0000 Subject: [PATCH 11/20] bfgs_trad --- source/module_relax/relax_driver.cpp | 2 +- source/module_relax/relax_new/bfgs.cpp | 6 +++--- source/module_relax/relax_new/bfgs.h | 8 +++++--- source/module_relax/relax_new/test/CMakeLists.txt | 8 -------- 4 files changed, 9 insertions(+), 15 deletions(-) diff --git a/source/module_relax/relax_driver.cpp b/source/module_relax/relax_driver.cpp index 3a5fa62482..65a07d811d 100644 --- a/source/module_relax/relax_driver.cpp +++ b/source/module_relax/relax_driver.cpp @@ -18,7 +18,7 @@ void Relax_Driver::relax_driver(ModuleESolver::ESolver* p_esolver) { if(PARAM.inp.relax_method == "bfgs_trad") { - bfgs_trad.init_relax(GlobalC::ucell.nat,GlobalC::ucell); + bfgs_trad.init_relax(GlobalC::ucell.nat,GlobalC::ucell,PARAM.inp.relax_bfgs_rmax); } else if (!PARAM.inp.relax_new) { diff --git a/source/module_relax/relax_new/bfgs.cpp b/source/module_relax/relax_new/bfgs.cpp index 9f7fd28854..03b4e00df7 100644 --- a/source/module_relax/relax_new/bfgs.cpp +++ b/source/module_relax/relax_new/bfgs.cpp @@ -1,12 +1,12 @@ #include "bfgs.h" #include "module_hamilt_pw/hamilt_pwdft/global.h" #include "module_base/matrix3.h" +#include "module_relax/relax_old/ions_move_basic.h" - -void BFGS::init_relax(const int _size,UnitCell& ucell) // initialize H0、H、pos0、force0、force +void BFGS::init_relax(const int _size,UnitCell& ucell,double _maxstep) // initialize H0、H、pos0、force0、force { alpha=70;//relax_scale_force - maxstep=100; + maxstep=_maxstep; size=_size; sign =true; H = std::vector>(3*size, std::vector(3*size, 0.0)); diff --git a/source/module_relax/relax_new/bfgs.h b/source/module_relax/relax_new/bfgs.h index 6e21f9c869..e7e0796e21 100644 --- a/source/module_relax/relax_new/bfgs.h +++ b/source/module_relax/relax_new/bfgs.h @@ -10,12 +10,13 @@ #include "module_base/matrix.h" #include "module_base/matrix3.h" + class BFGS { public: double alpha;//initialize H,diagonal element is alpha - int maxstep;//every movement smaller than maxstep + double maxstep;//every movement smaller than maxstep int size;//number of etoms @@ -26,8 +27,9 @@ class BFGS std::vector pos0; std::vector> pos; std::vector> dpos; - void init_relax(const int _size,UnitCell& ucell); - bool relax_step(ModuleBase::matrix _force,UnitCell& ucell); + + void init_relax(const int _size,UnitCell& ucell,double _maxstep);//initialize parameters + bool relax_step(ModuleBase::matrix _force,UnitCell& ucell);// void PrepareStep(std::vector>& force,std::vector>& pos,std::vector>& H,std::vector& pos0,std::vector& force0,std::vector& steplength); bool IsRestrain(std::vector>& dpos); diff --git a/source/module_relax/relax_new/test/CMakeLists.txt b/source/module_relax/relax_new/test/CMakeLists.txt index 9e3ee9ec4b..92fb60770c 100644 --- a/source/module_relax/relax_new/test/CMakeLists.txt +++ b/source/module_relax/relax_new/test/CMakeLists.txt @@ -21,11 +21,3 @@ AddTest( LIBS parameter ${math_libs} ) -AddTest( - TARGET bfgs_test - LIBS parameter ${math_libs} - SOURCES bfgs_test.cpp ../bfgs.cpp relax_test.cpp ../relax.cpp ../line_search.cpp ../../../module_base/tool_quit.cpp ../../../module_base/global_variable.cpp ../../../module_base/global_file.cpp ../../../module_base/memory.cpp ../../../module_base/timer.cpp - ../../../module_base/matrix3.cpp ../../../module_base/intarray.cpp ../../../module_base/tool_title.cpp - ../../../module_base/global_function.cpp ../../../module_base/complexmatrix.cpp ../../../module_base/matrix.cpp - ../../../module_base/complexarray.cpp ../../../module_base/tool_quit.cpp ../../../module_base/realarray.cpp ../../../module_base/blas_connector.cpp -) \ No newline at end of file From d5b1c1467cc410c889566a81d659fe0dcfdff516 Mon Sep 17 00:00:00 2001 From: feiyang <2100011095@stu.pku.edu.cn> Date: Mon, 18 Nov 2024 15:20:34 +0000 Subject: [PATCH 12/20] bfgs_trad --- source/module_relax/relax_new/bfgs.cpp | 35 ++++++++++++++++++++------ source/module_relax/relax_new/bfgs.h | 4 +-- tests/integrate/109_PW_CR/INPUT | 5 ++-- tests/integrate/109_PW_CR/KPT | 2 +- 4 files changed, 33 insertions(+), 13 deletions(-) diff --git a/source/module_relax/relax_new/bfgs.cpp b/source/module_relax/relax_new/bfgs.cpp index 03b4e00df7..777d4d558d 100644 --- a/source/module_relax/relax_new/bfgs.cpp +++ b/source/module_relax/relax_new/bfgs.cpp @@ -6,7 +6,11 @@ void BFGS::init_relax(const int _size,UnitCell& ucell,double _maxstep) // initialize H0、H、pos0、force0、force { alpha=70;//relax_scale_force - maxstep=_maxstep; + maxstep=_maxstep; + if(maxstep==0) + { + maxstep=0.8; + } size=_size; sign =true; H = std::vector>(3*size, std::vector(3*size, 0.0)); @@ -40,18 +44,19 @@ bool BFGS::relax_step(ModuleBase::matrix _force,UnitCell& ucell) //std::cout<<"enter Step0"<PrepareStep(force,pos,H,pos0,force0,steplength); + this->PrepareStep(force,pos,H,pos0,force0,steplength,dpos); //std::cout<<"enter Step1"<DetermineStep(steplength,dpos,maxstep); + std::cout<<"enter Step2"<UpdatePos(ucell); //std::cout<<"enter Step3"<IsRestrain(dpos); @@ -73,7 +78,7 @@ void BFGS::GetPos(UnitCell& ucell,std::vector>& pos) } -void BFGS::PrepareStep(std::vector>& force,std::vector>& pos,std::vector>& H,std::vector& pos0,std::vector& force0,std::vector& steplength) +void BFGS::PrepareStep(std::vector>& force,std::vector>& pos,std::vector>& H,std::vector& pos0,std::vector& force0,std::vector& steplength,std::vector>& dpos) { //std::cout<<"enter prepareStep0"< changedforce = this->ReshapeMToV(force); @@ -124,13 +129,29 @@ void BFGS::PrepareStep(std::vector>& force,std::vector a=this->DotInMAndV2(V, changedforce); for(int i = 0; i < a.size(); i++) { - a[i] /= abs(omega[i]); + if(omega[i]>0) + { + a[i] /= omega[i]; + } + else if(omega[i]<0) + { + a[i] /= (-omega[i]); + } + } std::vector tmpdpos = this->DotInMAndV1(V, a); dpos = this->ReshapeVToM(tmpdpos); + /*for(int i=0;i pos, std::vector force,std::vector H = this->MSubM(H, this->MPlus(this->OuterVAndV(dg, dg), b)); } -void BFGS::DetermineStep(std::vector steplength,std::vector>& dpos,int maxstep) +void BFGS::DetermineStep(std::vector steplength,std::vector>& dpos,double maxstep) { auto maxsteplength = max_element(steplength.begin(), steplength.end()); double a = *maxsteplength; diff --git a/source/module_relax/relax_new/bfgs.h b/source/module_relax/relax_new/bfgs.h index e7e0796e21..be67965cd6 100644 --- a/source/module_relax/relax_new/bfgs.h +++ b/source/module_relax/relax_new/bfgs.h @@ -30,7 +30,7 @@ class BFGS void init_relax(const int _size,UnitCell& ucell,double _maxstep);//initialize parameters bool relax_step(ModuleBase::matrix _force,UnitCell& ucell);// - void PrepareStep(std::vector>& force,std::vector>& pos,std::vector>& H,std::vector& pos0,std::vector& force0,std::vector& steplength); + void PrepareStep(std::vector>& force,std::vector>& pos,std::vector>& H,std::vector& pos0,std::vector& force0,std::vector& steplength,std::vector>& dpos); bool IsRestrain(std::vector>& dpos); private: @@ -39,7 +39,7 @@ class BFGS void GetPos(UnitCell& ucell,std::vector>& pos); void Update(std::vector pos, std::vector force,std::vector>& H); - void DetermineStep(std::vector steplength,std::vector>& dpos,int maxstep); + void DetermineStep(std::vector steplength,std::vector>& dpos,double maxstep); void UpdatePos(UnitCell& ucell); diff --git a/tests/integrate/109_PW_CR/INPUT b/tests/integrate/109_PW_CR/INPUT index 57e45022db..81e64982e5 100644 --- a/tests/integrate/109_PW_CR/INPUT +++ b/tests/integrate/109_PW_CR/INPUT @@ -4,12 +4,12 @@ suffix autotest pseudo_dir ../../PP_ORB nbands 8 -calculation cell_relax +calculation cell-relax #Parameters (Accuracy) ecutwfc 20 scf_nmax 20 kpar 2 -nspin 1 +nspin 2 basis_type pw relax_nmax 2 @@ -20,7 +20,6 @@ stress_thr 1e-6 cal_force 1 force_thr_ev 1.0e-3 - #ks_solver scalapack_gvx mixing_type broyden mixing_beta 0.7 diff --git a/tests/integrate/109_PW_CR/KPT b/tests/integrate/109_PW_CR/KPT index f5f7f4ec34..b6ec727c04 100644 --- a/tests/integrate/109_PW_CR/KPT +++ b/tests/integrate/109_PW_CR/KPT @@ -1,4 +1,4 @@ K_POINTS 0 Gamma -2 2 2 0 0 0 +3 1 2 3 1 2 From 73a8136e78e0bb1adf524c2e65cc2ba6ce754260 Mon Sep 17 00:00:00 2001 From: feiyang <2100011095@stu.pku.edu.cn> Date: Mon, 18 Nov 2024 15:24:20 +0000 Subject: [PATCH 13/20] bfgs_trad --- tests/integrate/109_PW_CR/KPT | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/tests/integrate/109_PW_CR/KPT b/tests/integrate/109_PW_CR/KPT index b6ec727c04..f5f7f4ec34 100644 --- a/tests/integrate/109_PW_CR/KPT +++ b/tests/integrate/109_PW_CR/KPT @@ -1,4 +1,4 @@ K_POINTS 0 Gamma -3 1 2 3 1 2 +2 2 2 0 0 0 From a02316b696947d7afb81f2f1ba37a46c557c7429 Mon Sep 17 00:00:00 2001 From: feiyang <2100011095@stu.pku.edu.cn> Date: Tue, 19 Nov 2024 12:28:50 +0000 Subject: [PATCH 14/20] bfgs_trad --- source/module_relax/CMakeLists.txt | 4 +- source/module_relax/relax_driver.cpp | 10 ++-- source/module_relax/relax_driver.h | 4 +- .../{relax_new => relax_old}/bfgs.cpp | 55 +++++++++++-------- .../{relax_new => relax_old}/bfgs.h | 10 ++-- .../relax_old/ions_move_methods.cpp | 10 ++++ .../relax_old/ions_move_methods.h | 2 + .../relax_old/test/CMakeLists.txt | 6 +- .../test/bfgs_test.cpp | 0 9 files changed, 61 insertions(+), 40 deletions(-) rename source/module_relax/{relax_new => relax_old}/bfgs.cpp (90%) rename source/module_relax/{relax_new => relax_old}/bfgs.h (91%) rename source/module_relax/{relax_new => relax_old}/test/bfgs_test.cpp (100%) diff --git a/source/module_relax/CMakeLists.txt b/source/module_relax/CMakeLists.txt index f97797adee..fac199bcc9 100644 --- a/source/module_relax/CMakeLists.txt +++ b/source/module_relax/CMakeLists.txt @@ -6,8 +6,8 @@ add_library( relax_new/relax.cpp relax_new/line_search.cpp - relax_new/bfgs.cpp - + + relax_old/bfgs.cpp relax_old/relax_old.cpp relax_old/bfgs_basic.cpp relax_old/ions_move_basic.cpp diff --git a/source/module_relax/relax_driver.cpp b/source/module_relax/relax_driver.cpp index 65a07d811d..6f05f846d5 100644 --- a/source/module_relax/relax_driver.cpp +++ b/source/module_relax/relax_driver.cpp @@ -16,11 +16,11 @@ void Relax_Driver::relax_driver(ModuleESolver::ESolver* p_esolver) if (PARAM.inp.calculation == "relax" || PARAM.inp.calculation == "cell-relax" ) { - if(PARAM.inp.relax_method == "bfgs_trad") + /*if(PARAM.inp.relax_method=="bfgs_trad") { - bfgs_trad.init_relax(GlobalC::ucell.nat,GlobalC::ucell,PARAM.inp.relax_bfgs_rmax); + bfgs_trad.allocate(GlobalC::ucell.nat); } - else if (!PARAM.inp.relax_new) + else*/ if (!PARAM.inp.relax_new) { rl_old.init_relax(GlobalC::ucell.nat); } @@ -82,12 +82,12 @@ void Relax_Driver::relax_driver(ModuleESolver::ESolver* p_esolver) if (PARAM.inp.calculation == "relax" || PARAM.inp.calculation == "cell-relax") { - if(PARAM.inp.relax_method == "bfgs_trad") + /*if(PARAM.inp.relax_method == "bfgs_trad") { stop=bfgs_trad.relax_step(force,GlobalC::ucell); } - else if (PARAM.inp.relax_new) + else*/ if (PARAM.inp.relax_new) { stop = rl.relax_step(force, stress, this->etot); } diff --git a/source/module_relax/relax_driver.h b/source/module_relax/relax_driver.h index ed5ae549e3..05610a7175 100644 --- a/source/module_relax/relax_driver.h +++ b/source/module_relax/relax_driver.h @@ -5,7 +5,7 @@ #include "module_esolver/esolver_ks.h" #include "relax_new/relax.h" #include "relax_old/relax_old.h" -#include "relax_new/bfgs.h" +#include "relax_old/bfgs.h" class Relax_Driver { @@ -28,6 +28,8 @@ class Relax_Driver Relax_old rl_old; BFGS bfgs_trad; + + }; #endif diff --git a/source/module_relax/relax_new/bfgs.cpp b/source/module_relax/relax_old/bfgs.cpp similarity index 90% rename from source/module_relax/relax_new/bfgs.cpp rename to source/module_relax/relax_old/bfgs.cpp index 777d4d558d..b19bb0735e 100644 --- a/source/module_relax/relax_new/bfgs.cpp +++ b/source/module_relax/relax_old/bfgs.cpp @@ -2,11 +2,14 @@ #include "module_hamilt_pw/hamilt_pwdft/global.h" #include "module_base/matrix3.h" #include "module_relax/relax_old/ions_move_basic.h" +#include "module_parameter/parameter.h" +#include "ions_move_basic.h" -void BFGS::init_relax(const int _size,UnitCell& ucell,double _maxstep) // initialize H0、H、pos0、force0、force + +void BFGS::allocate(const int _size) // initialize H0、H、pos0、force0、force { alpha=70;//relax_scale_force - maxstep=_maxstep; + maxstep=PARAM.inp.relax_bfgs_rmax; if(maxstep==0) { maxstep=0.8; @@ -23,13 +26,19 @@ void BFGS::init_relax(const int _size,UnitCell& ucell,double _maxstep) // initia force0 = std::vector(3*size, 0.0); force = std::vector>(size, std::vector(3, 0.0)); steplength = std::vector(size, 0.0); - this->GetPos(ucell,pos); + this->GetPos(GlobalC::ucell,pos); + } -bool BFGS::relax_step(ModuleBase::matrix _force,UnitCell& ucell) +void BFGS::relax_step(ModuleBase::matrix _force,UnitCell& ucell) { std::cout<<"enter Step"<UpdatePos(ucell); //std::cout<<"enter Step3"<IsRestrain(dpos); + this->IsRestrain(dpos); } void BFGS::GetPos(UnitCell& ucell,std::vector>& pos) { int k=0; - for(int i=0;i>& force,std::vectorUpdate(changedpos, changedforce,H); //std::cout<<"enter prepareStep2"< omega(3*size); @@ -226,20 +235,20 @@ void BFGS::UpdatePos(UnitCell& ucell) //convert unit ModuleBase::Vector3 move_ion_cart; - move_ion_cart.x = dpos[iat][0] / ModuleBase::BOHR_TO_A / GlobalC::ucell.lat0; - move_ion_cart.y = dpos[iat][1] / ModuleBase::BOHR_TO_A / GlobalC::ucell.lat0; - move_ion_cart.z = dpos[iat][2] / ModuleBase::BOHR_TO_A / GlobalC::ucell.lat0; + move_ion_cart.x = dpos[iat][0] / ModuleBase::BOHR_TO_A / ucell.lat0; + move_ion_cart.y = dpos[iat][1] / ModuleBase::BOHR_TO_A / ucell.lat0; + move_ion_cart.z = dpos[iat][2] / ModuleBase::BOHR_TO_A / ucell.lat0; //convert to Direct coordinate //note here the old GT is used //convert pos - ModuleBase::Vector3 move_ion_dr = move_ion_cart * GlobalC::ucell.GT; + ModuleBase::Vector3 move_ion_dr = move_ion_cart * ucell.GT; - int it = GlobalC::ucell.iat2it[iat]; - int ia = GlobalC::ucell.iat2ia[iat]; - Atom* atom = &GlobalC::ucell.atoms[it]; + int it = ucell.iat2it[iat]; + int ia = ucell.iat2ia[iat]; + Atom* atom = &ucell.atoms[it]; if(atom->mbl[ia].x == 1) { @@ -254,11 +263,11 @@ void BFGS::UpdatePos(UnitCell& ucell) move_ion[iat * 3 + 2] = move_ion_dr.z ; } } - GlobalC::ucell.update_pos_taud(move_ion); + ucell.update_pos_taud(move_ion); pos = this->MAddM(pos, dpos); } -bool BFGS::IsRestrain(std::vector>& dpos) +void BFGS::IsRestrain(std::vector>& dpos) { double a=0; for(int i=0;i>& dpos) } } std::cout< #include #include"module_base/lapack_connector.h" -#include "module_cell/unitcell.h" + #include "module_base/matrix.h" #include "module_base/matrix3.h" +#include "module_cell/unitcell.h" + class BFGS @@ -28,10 +30,10 @@ class BFGS std::vector> pos; std::vector> dpos; - void init_relax(const int _size,UnitCell& ucell,double _maxstep);//initialize parameters - bool relax_step(ModuleBase::matrix _force,UnitCell& ucell);// + void allocate(const int _size);//initialize parameters + void relax_step(ModuleBase::matrix _force,UnitCell& ucell);// void PrepareStep(std::vector>& force,std::vector>& pos,std::vector>& H,std::vector& pos0,std::vector& force0,std::vector& steplength,std::vector>& dpos); - bool IsRestrain(std::vector>& dpos); + void IsRestrain(std::vector>& dpos); private: bool sign; diff --git a/source/module_relax/relax_old/ions_move_methods.cpp b/source/module_relax/relax_old/ions_move_methods.cpp index de8b240885..c8a4dd4778 100644 --- a/source/module_relax/relax_old/ions_move_methods.cpp +++ b/source/module_relax/relax_old/ions_move_methods.cpp @@ -32,6 +32,11 @@ void Ions_Move_Methods::allocate(const int &natom) this->cg.allocate(); this->bfgs.allocate(); // added by pengfei 13-8-8 } + else if(Ions_Move_Basic::relax_method == "bfgs_trad") + { + this->bfgs_trad.allocate(natom); + + } else { ModuleBase::WARNING("Ions_Move_Methods::init", "the parameter Ions_Move_Basic::relax_method is not correct."); @@ -70,6 +75,11 @@ void Ions_Move_Methods::cal_movement(const int &istep, { cg.start(ucell, f, etot); // added by pengfei 13-8-10 } + else if(Ions_Move_Basic::relax_method == "bfgs_trad") + { + bfgs_trad.relax_step(f,ucell); + + } else { ModuleBase::WARNING("Ions_Move_Methods::init", "the parameter Ions_Move_Basic::relax_method is not correct."); diff --git a/source/module_relax/relax_old/ions_move_methods.h b/source/module_relax/relax_old/ions_move_methods.h index 9888105a7b..7ddb5bd2bb 100644 --- a/source/module_relax/relax_old/ions_move_methods.h +++ b/source/module_relax/relax_old/ions_move_methods.h @@ -5,6 +5,7 @@ #include "ions_move_bfgs.h" #include "ions_move_cg.h" #include "ions_move_sd.h" +#include "bfgs.h" class Ions_Move_Methods { @@ -45,5 +46,6 @@ class Ions_Move_Methods Ions_Move_BFGS bfgs; Ions_Move_CG cg; Ions_Move_SD sd; + BFGS bfgs_trad; }; #endif diff --git a/source/module_relax/relax_old/test/CMakeLists.txt b/source/module_relax/relax_old/test/CMakeLists.txt index 67517eba26..e6ff53c923 100644 --- a/source/module_relax/relax_old/test/CMakeLists.txt +++ b/source/module_relax/relax_old/test/CMakeLists.txt @@ -29,11 +29,7 @@ AddTest( SOURCES bfgs_basic_test.cpp ../bfgs_basic.cpp ) -AddTest( - TARGET ions_move_methods_test - LIBS parameter ${math_libs} base device - SOURCES ions_move_methods_test.cpp ../ions_move_methods.cpp ../ions_move_basic.cpp ../ions_move_bfgs.cpp ../ions_move_cg.cpp ../ions_move_sd.cpp ../bfgs_basic.cpp -) + AddTest( TARGET ions_move_basic_test diff --git a/source/module_relax/relax_new/test/bfgs_test.cpp b/source/module_relax/relax_old/test/bfgs_test.cpp similarity index 100% rename from source/module_relax/relax_new/test/bfgs_test.cpp rename to source/module_relax/relax_old/test/bfgs_test.cpp From cc0b5edf8eae6db45e7bdfffb7dd472b55d8cda3 Mon Sep 17 00:00:00 2001 From: feiyang <2100011095@stu.pku.edu.cn> Date: Wed, 20 Nov 2024 05:50:45 +0000 Subject: [PATCH 15/20] bfgs_trad --- source/module_relax/CMakeLists.txt | 1 - source/module_relax/relax_driver.cpp | 18 +++--------------- source/module_relax/relax_old/bfgs.cpp | 15 +++++---------- 3 files changed, 8 insertions(+), 26 deletions(-) diff --git a/source/module_relax/CMakeLists.txt b/source/module_relax/CMakeLists.txt index fac199bcc9..ab2925e700 100644 --- a/source/module_relax/CMakeLists.txt +++ b/source/module_relax/CMakeLists.txt @@ -18,7 +18,6 @@ add_library( relax_old/lattice_change_basic.cpp relax_old/lattice_change_cg.cpp relax_old/lattice_change_methods.cpp - ) if(ENABLE_COVERAGE) diff --git a/source/module_relax/relax_driver.cpp b/source/module_relax/relax_driver.cpp index 6f05f846d5..f190b1149f 100644 --- a/source/module_relax/relax_driver.cpp +++ b/source/module_relax/relax_driver.cpp @@ -16,11 +16,7 @@ void Relax_Driver::relax_driver(ModuleESolver::ESolver* p_esolver) if (PARAM.inp.calculation == "relax" || PARAM.inp.calculation == "cell-relax" ) { - /*if(PARAM.inp.relax_method=="bfgs_trad") - { - bfgs_trad.allocate(GlobalC::ucell.nat); - } - else*/ if (!PARAM.inp.relax_new) + if (!PARAM.inp.relax_new) { rl_old.init_relax(GlobalC::ucell.nat); } @@ -30,7 +26,6 @@ void Relax_Driver::relax_driver(ModuleESolver::ESolver* p_esolver) } } - this->istep = 1; int force_step = 1; // pengfei Li 2018-05-14 int stress_step = 1; @@ -82,12 +77,7 @@ void Relax_Driver::relax_driver(ModuleESolver::ESolver* p_esolver) if (PARAM.inp.calculation == "relax" || PARAM.inp.calculation == "cell-relax") { - /*if(PARAM.inp.relax_method == "bfgs_trad") - { - stop=bfgs_trad.relax_step(force,GlobalC::ucell); - } - - else*/ if (PARAM.inp.relax_new) + if (PARAM.inp.relax_new) { stop = rl.relax_step(force, stress, this->etot); } @@ -100,9 +90,7 @@ void Relax_Driver::relax_driver(ModuleESolver::ESolver* p_esolver) stress, force_step, stress_step); // pengfei Li 2018-05-14 - } - - + } // print structure // changelog 20240509 // because I move out the dependence on GlobalV from UnitCell::print_stru_file diff --git a/source/module_relax/relax_old/bfgs.cpp b/source/module_relax/relax_old/bfgs.cpp index b19bb0735e..af66426e70 100644 --- a/source/module_relax/relax_old/bfgs.cpp +++ b/source/module_relax/relax_old/bfgs.cpp @@ -33,14 +33,9 @@ void BFGS::allocate(const int _size) // initialize H0、H、pos0、force0、forc void BFGS::relax_step(ModuleBase::matrix _force,UnitCell& ucell) { - std::cout<<"enter Step"<DetermineStep(steplength,dpos,maxstep); - std::cout<<"enter Step2"<>& dpos) } } } - std::cout< Date: Wed, 20 Nov 2024 05:57:15 +0000 Subject: [PATCH 16/20] bfgs_trad --- source/module_relax/relax_old/ions_move_methods.cpp | 6 ++---- 1 file changed, 2 insertions(+), 4 deletions(-) diff --git a/source/module_relax/relax_old/ions_move_methods.cpp b/source/module_relax/relax_old/ions_move_methods.cpp index c8a4dd4778..60c71fd554 100644 --- a/source/module_relax/relax_old/ions_move_methods.cpp +++ b/source/module_relax/relax_old/ions_move_methods.cpp @@ -34,8 +34,7 @@ void Ions_Move_Methods::allocate(const int &natom) } else if(Ions_Move_Basic::relax_method == "bfgs_trad") { - this->bfgs_trad.allocate(natom); - + this->bfgs_trad.allocate(natom); } else { @@ -77,8 +76,7 @@ void Ions_Move_Methods::cal_movement(const int &istep, } else if(Ions_Move_Basic::relax_method == "bfgs_trad") { - bfgs_trad.relax_step(f,ucell); - + bfgs_trad.relax_step(f,ucell); } else { From 8e9f2d88a0fae63340e2232e399dab4290e14d72 Mon Sep 17 00:00:00 2001 From: feiyang <2100011095@stu.pku.edu.cn> Date: Wed, 20 Nov 2024 06:28:48 +0000 Subject: [PATCH 17/20] bfgs_trad --- source/module_relax/relax_old/bfgs.cpp | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/source/module_relax/relax_old/bfgs.cpp b/source/module_relax/relax_old/bfgs.cpp index af66426e70..22cf2d25b0 100644 --- a/source/module_relax/relax_old/bfgs.cpp +++ b/source/module_relax/relax_old/bfgs.cpp @@ -35,16 +35,16 @@ void BFGS::relax_step(ModuleBase::matrix _force,UnitCell& ucell) { //std::cout<<"enter Step"< Date: Thu, 21 Nov 2024 08:47:54 +0000 Subject: [PATCH 18/20] bfgs_trad --- source/module_relax/relax_old/bfgs.cpp | 237 ++++++++++++++---- source/module_relax/relax_old/bfgs.h | 9 +- .../relax_old/test/CMakeLists.txt | 7 +- .../module_relax/relax_old/test/bfgs_test.cpp | 116 ++++++--- tests/integrate/108_PW_RE_MB_NEW/INPUT | 32 +++ tests/integrate/108_PW_RE_MB_NEW/KPT | 4 + tests/integrate/108_PW_RE_MB_NEW/README | 9 + tests/integrate/108_PW_RE_MB_NEW/STRU | 19 ++ tests/integrate/108_PW_RE_MB_NEW/jd | 1 + tests/integrate/108_PW_RE_MB_NEW/result.ref | 7 + tests/integrate/108_PW_RE_MB_NEW/threshold | 4 + tests/integrate/CASES_CPU.txt | 1 + 12 files changed, 352 insertions(+), 94 deletions(-) create mode 100644 tests/integrate/108_PW_RE_MB_NEW/INPUT create mode 100644 tests/integrate/108_PW_RE_MB_NEW/KPT create mode 100644 tests/integrate/108_PW_RE_MB_NEW/README create mode 100644 tests/integrate/108_PW_RE_MB_NEW/STRU create mode 100644 tests/integrate/108_PW_RE_MB_NEW/jd create mode 100644 tests/integrate/108_PW_RE_MB_NEW/result.ref create mode 100644 tests/integrate/108_PW_RE_MB_NEW/threshold diff --git a/source/module_relax/relax_old/bfgs.cpp b/source/module_relax/relax_old/bfgs.cpp index 22cf2d25b0..45377a6a8e 100644 --- a/source/module_relax/relax_old/bfgs.cpp +++ b/source/module_relax/relax_old/bfgs.cpp @@ -1,11 +1,13 @@ #include "bfgs.h" #include "module_hamilt_pw/hamilt_pwdft/global.h" #include "module_base/matrix3.h" -#include "module_relax/relax_old/ions_move_basic.h" #include "module_parameter/parameter.h" #include "ions_move_basic.h" + + + void BFGS::allocate(const int _size) // initialize H0、H、pos0、force0、force { alpha=70;//relax_scale_force @@ -22,18 +24,18 @@ void BFGS::allocate(const int _size) // initialize H0、H、pos0、force0、forc } pos = std::vector> (size, std::vector(3, 0.0)); pos0 = std::vector(3*size, 0.0); + pos_taud = std::vector> (size, std::vector(3, 0.0)); + pos_taud0 = std::vector(3*size, 0.0); dpos = std::vector>(size, std::vector(3, 0.0)); force0 = std::vector(3*size, 0.0); force = std::vector>(size, std::vector(3, 0.0)); - steplength = std::vector(size, 0.0); - this->GetPos(GlobalC::ucell,pos); - - + steplength = std::vector(size, 0.0); } - void BFGS::relax_step(ModuleBase::matrix _force,UnitCell& ucell) { //std::cout<<"enter Step"<PrepareStep(force,pos,H,pos0,force0,steplength,dpos); - //std::cout<<"enter Step1"<PrepareStep(force,pos,H,pos0,force0,steplength,dpos,ucell); this->DetermineStep(steplength,dpos,maxstep); - //std::cout<<"enter Step2"<UpdatePos(ucell); - //std::cout<<"enter Step3"<IsRestrain(dpos); + this->CalculateLargestGrad(_force,ucell); + } - void BFGS::GetPos(UnitCell& ucell,std::vector>& pos) { int k=0; @@ -81,15 +80,27 @@ void BFGS::GetPos(UnitCell& ucell,std::vector>& pos) } } +void BFGS::GetPostaud(UnitCell& ucell,std::vector>& pos_taud) +{ + int k=0; + for(int i=0;i>& force,std::vector>& pos,std::vector>& H,std::vector& pos0,std::vector& force0,std::vector& steplength,std::vector>& dpos) +void BFGS::PrepareStep(std::vector>& force,std::vector>& pos,std::vector>& H,std::vector& pos0,std::vector& force0,std::vector& steplength,std::vector>& dpos,UnitCell& ucell) { - //std::cout<<"enter prepareStep0"< changedforce = this->ReshapeMToV(force); std::vector changedpos = this->ReshapeMToV(pos); - //std::cout<<"enter prepareStep1"<Update(changedpos, changedforce,H); - //std::cout<<"enter prepareStep2"<Update(changedpos, changedforce,H,ucell); /*for(int i = 0; i < 3*size; i++) { for(int j = 0; j < 3*size; j++) @@ -98,12 +109,10 @@ void BFGS::PrepareStep(std::vector>& force,std::vector omega(3*size); - //std::cout<<"enter prepareStep3"< work(3*size*3*size); - //std::cout<<"enter prepareStep4"< H_flat; @@ -115,7 +124,6 @@ void BFGS::PrepareStep(std::vector>& force,std::vector> V(3*size, std::vector(3*size, 0.0)); - //std::cout<<"enter prepareStep5"<>& force,std::vector a=this->DotInMAndV2(V, changedforce); for(int i = 0; i < a.size(); i++) { - if(omega[i]>0) + a[i]/=std::abs(omega[i]); + /*if(omega[i]>0) { a[i] /= omega[i]; } else if(omega[i]<0) { a[i] /= (-omega[i]); - } - + }*/ } - std::vector tmpdpos = this->DotInMAndV1(V, a); - - dpos = this->ReshapeVToM(tmpdpos); - /*for(int i=0;i>& force,std::vectorReshapeMToV(pos); + pos_taud0=this->ReshapeMToV(pos_taud); force0 = this->ReshapeMToV(force); } -void BFGS::Update(std::vector pos, std::vector force,std::vector>& H) +void BFGS::Update(std::vector pos, std::vector force,std::vector>& H,UnitCell& ucell) { if(sign) { sign=false; return; } - /*std::cout<<"PrintPos"< dpos = this->VSubV(ReshapeMToV(pos_taud), pos_taud0); for(int i=0;i<3*size;i++) { - std::cout<> c=ReshapeVToM(dpos); + for(int iat=0; iat move_ion_cart; + move_ion_cart.x = c[iat][0] *ModuleBase::BOHR_TO_A * ucell.lat0; + move_ion_cart.y = c[iat][1] * ModuleBase::BOHR_TO_A * ucell.lat0; + move_ion_cart.z = c[iat][2] * ModuleBase::BOHR_TO_A * ucell.lat0; + /*std::cout<<"moveioncart"< move_ion_dr = move_ion_cart* ucell.latvec; + int it = ucell.iat2it[iat]; + int ia = ucell.iat2ia[iat]; + Atom* atom = &ucell.atoms[it]; + + if(atom->mbl[ia].x == 1) + { + dpos[iat * 3] = move_ion_dr.x; + } + if(atom->mbl[ia].y == 1) + { + dpos[iat * 3 + 1] = move_ion_dr.y ; + } + if(atom->mbl[ia].z == 1) + { + dpos[iat * 3 + 2] = move_ion_dr.z ; + } + } + /*std::cout<<"PrintDpos"< dpos = this->VSubV(pos, pos0); if(*max_element(dpos.begin(), dpos.end()) < 1e-7) { return; @@ -220,7 +265,18 @@ void BFGS::DetermineStep(std::vector steplength,std::vector move_ion_dr = move_ion_cart * ucell.GT; + ModuleBase::Vector3 move_ion_dr = move_ion_cart* ucell.GT; int it = ucell.iat2it[iat]; @@ -258,8 +319,43 @@ void BFGS::UpdatePos(UnitCell& ucell) move_ion[iat * 3 + 2] = move_ion_dr.z ; } } - ucell.update_pos_taud(move_ion); - pos = this->MAddM(pos, dpos); + std::cout<<"move_ion_dr"<MAddM(pos, dpos);*/ } void BFGS::IsRestrain(std::vector>& dpos) @@ -284,9 +380,48 @@ void BFGS::IsRestrain(std::vector>& dpos) } } } - //std::cout< grad= std::vector(3*size, 0.0); + int iat = 0; + for (int it = 0; it < ucell.ntype; it++) + { + Atom *atom = &ucell.atoms[it]; + for (int ia = 0; ia < ucell.atoms[it].na; ia++) + { + for (int ik = 0; ik < 3; ++ik) + { + if (atom->mbl[ia][ik]) + { + grad[3 * iat + ik] = -_force(iat, ik) * ucell.lat0; + } + } + ++iat; + } + } + Ions_Move_Basic::largest_grad = 0.0; + for (int i = 0; i < 3*size; i++) + { + if (Ions_Move_Basic::largest_grad < std::abs(grad[i])) + { + Ions_Move_Basic::largest_grad = std::abs(grad[i]); + } + } + Ions_Move_Basic::largest_grad /= ucell.lat0; + if (PARAM.inp.out_level == "ie") + { + std::cout << " LARGEST GRAD (eV/A) : " << Ions_Move_Basic::largest_grad * ModuleBase::Ry_to_eV / 0.529177 + << std::endl; + } + +} + + // matrix methods std::vector BFGS::ReshapeMToV(std::vector> matrix) diff --git a/source/module_relax/relax_old/bfgs.h b/source/module_relax/relax_old/bfgs.h index a19d68d62c..148ae610d0 100644 --- a/source/module_relax/relax_old/bfgs.h +++ b/source/module_relax/relax_old/bfgs.h @@ -28,19 +28,22 @@ class BFGS std::vector> force; std::vector pos0; std::vector> pos; + std::vector pos_taud0; + std::vector> pos_taud; std::vector> dpos; void allocate(const int _size);//initialize parameters void relax_step(ModuleBase::matrix _force,UnitCell& ucell);// - void PrepareStep(std::vector>& force,std::vector>& pos,std::vector>& H,std::vector& pos0,std::vector& force0,std::vector& steplength,std::vector>& dpos); + void PrepareStep(std::vector>& force,std::vector>& pos,std::vector>& H,std::vector& pos0,std::vector& force0,std::vector& steplength,std::vector>& dpos,UnitCell& ucell); void IsRestrain(std::vector>& dpos); private: bool sign; - + void CalculateLargestGrad(ModuleBase::matrix _force,UnitCell& ucell); void GetPos(UnitCell& ucell,std::vector>& pos); - void Update(std::vector pos, std::vector force,std::vector>& H); + void GetPostaud(UnitCell& ucell,std::vector>& pos_taud); + void Update(std::vector pos, std::vector force,std::vector>& H,UnitCell& ucell); void DetermineStep(std::vector steplength,std::vector>& dpos,double maxstep); void UpdatePos(UnitCell& ucell); diff --git a/source/module_relax/relax_old/test/CMakeLists.txt b/source/module_relax/relax_old/test/CMakeLists.txt index e6ff53c923..9a5ccdf95f 100644 --- a/source/module_relax/relax_old/test/CMakeLists.txt +++ b/source/module_relax/relax_old/test/CMakeLists.txt @@ -26,10 +26,15 @@ AddTest( AddTest( TARGET bfgs_basic_test LIBS parameter ${math_libs} base device - SOURCES bfgs_basic_test.cpp ../bfgs_basic.cpp + SOURCES bfgs_basic_test.cpp ../bfgs_basic.cpp ) +AddTest( + TARGET bfgs_test + LIBS parameter ${math_libs} base device + SOURCES bfgs_test.cpp ../bfgs.cpp ../ions_move_basic.cpp +) AddTest( TARGET ions_move_basic_test diff --git a/source/module_relax/relax_old/test/bfgs_test.cpp b/source/module_relax/relax_old/test/bfgs_test.cpp index f7da58a82e..d8c339713b 100644 --- a/source/module_relax/relax_old/test/bfgs_test.cpp +++ b/source/module_relax/relax_old/test/bfgs_test.cpp @@ -1,55 +1,93 @@ -/*#include -#include "../bfgs.h" -#include "module_hamilt_pw/hamilt_pwdft/global.h" -#include "module_base/matrix3.h" -#include "module_base/vector3.h" - -TEST(BFGSTest, InitializeTest) { - BFGS optimizer; +#include +#include "for_test.h" +#include "module_relax/relax_old/bfgs.h" +#include "module_cell/unitcell.h" +#include "module_base/matrix.h" +#include "module_relax/relax_old/ions_move_basic.h" + + +TEST(BFGSTest, AllocateTest) { + BFGS bfgs; int size = 5; - optimizer.init_relax(size); + bfgs.allocate(size); - EXPECT_EQ(optimizer.size, size); - EXPECT_EQ(optimizer.alpha, 70); - EXPECT_EQ(optimizer.maxstep, 100); - for (int i = 0; i < 3 * size; ++i) { - EXPECT_DOUBLE_EQ(optimizer.H[i][i], 70.0); + + EXPECT_EQ(bfgs.steplength.size(), size); + EXPECT_EQ(bfgs.force0.size(), size); + EXPECT_EQ(bfgs.H.size(), size); + for (const auto& row : bfgs.H) { + EXPECT_EQ(row.size(), size); } } +TEST(BFGSTest, RelaxStepTest) { + BFGS bfgs; + UnitCell ucell; + ModuleBase::matrix force(3, 3,true); + int size = 3; + + bfgs.allocate(size); + force(0, 0)=0.1; + force(1, 1)=0.2; + force(2, 2)=0.3; -// test PrepareStep -TEST(BFGSTest, PrepareStepTest) { - BFGS optimizer; - int size = 3; - optimizer.init_relax(size); - - std::vector> test_pos(size, std::vector(3, 0.0)); - std::vector> test_force(size, std::vector(3, 0.5)); - - optimizer.pos = test_pos; - optimizer.force = test_force; - optimizer.PrepareStep(); - for (const auto& row : optimizer.dpos) { - for (const auto& elem : row) { - EXPECT_NE(elem, 0.0); - } - } + ASSERT_NO_THROW(bfgs.relax_step(force, ucell)); + + + EXPECT_EQ(bfgs.pos.size(), size); } -// test IsRestrain -TEST(BFGSTest, IsRestrainTest) { - BFGS optimizer; +/*TEST(BFGSTest, PrepareStepIntegrationTest) { + BFGS bfgs; int size = 3; - optimizer.init_relax(size); + bfgs.allocate(size); - optimizer.dpos = {{1e-8, 1e-8, 1e-8}, {1e-8, 1e-8, 1e-8}, {1e-8, 1e-8, 1e-8}}; - EXPECT_TRUE(optimizer.IsRestrain()); + std::vector> force = {{1.0, 2.0, 3.0}, {4.0, 5.0, 6.0}, {7.0, 8.0, 9.0}}; + std::vector> pos = {{0.0, 0.0, 0.0}, {1.0, 1.0, 1.0}, {2.0, 2.0, 2.0}}; + std::vector> H = {{1.0, 0.0, 0.0}, {0.0, 1.0, 0.0}, {0.0, 0.0, 1.0}}; + std::vector pos0(size, 0.0); + std::vector force0(size, 0.0); + std::vector steplength(size, 0.0); + std::vector> dpos(size, std::vector(size, 0.0)); - optimizer.dpos = {{0.001, 0.001, 0.001}, {0.001, 0.001, 0.001}, {0.001, 0.001, 0.001}}; - EXPECT_FALSE(optimizer.IsRestrain()); + bfgs.PrepareStep(force, pos, H, pos0, force0, steplength, dpos); + + for (double step : steplength) { + EXPECT_GT(step, 0.0); + } }*/ +TEST(BFGSTest, IsRestrainTest) { + BFGS bfgs; + int size = 3; + bfgs.allocate(size); + + std::vector> dpos = {{1.0, 2.0, 3.0}, {4.0, 5.0, 6.0}, {7.0, 8.0, 9.0}}; + bfgs.IsRestrain(dpos); + for (const auto& row : dpos) + { + for (double val : row) + { + EXPECT_LE(val, bfgs.maxstep); + } + } +} +TEST(BFGSTest, FullStepTest) +{ + BFGS bfgs; + UnitCell ucell; + ModuleBase::matrix force(3, 3); + int size = 3; + bfgs.allocate(size); + force(0, 0)=-0.5; + force(1, 1)=-0.3; + force(2, 2)=0.1; + ASSERT_NO_THROW({ + bfgs.relax_step(force, ucell); + }); + EXPECT_EQ(bfgs.force.size(), size); + EXPECT_EQ(bfgs.pos.size(), size); +} \ No newline at end of file diff --git a/tests/integrate/108_PW_RE_MB_NEW/INPUT b/tests/integrate/108_PW_RE_MB_NEW/INPUT new file mode 100644 index 0000000000..6dff561665 --- /dev/null +++ b/tests/integrate/108_PW_RE_MB_NEW/INPUT @@ -0,0 +1,32 @@ +INPUT_PARAMETERS +#Parameters (1.General) +suffix autotest +calculation relax + +nbands 8 +symmetry 1 +pseudo_dir ../../PP_ORB + +#Parameters (2.Iteration) +ecutwfc 20 +scf_thr 1e-9 +scf_nmax 100 + +#Parameters (3.Relaxation) +relax_nmax 2 +cal_force 1 +force_thr_ev 0.01 +relax_method bfgs_trad + +#Parameters (4.Basis) +basis_type pw + +#Parameters (5.Smearing) +smearing_method gauss +smearing_sigma 0.002 + +#Parameters (6.Mixing) +mixing_type broyden +mixing_beta 0.5 + +relax_new 0 diff --git a/tests/integrate/108_PW_RE_MB_NEW/KPT b/tests/integrate/108_PW_RE_MB_NEW/KPT new file mode 100644 index 0000000000..f5f7f4ec34 --- /dev/null +++ b/tests/integrate/108_PW_RE_MB_NEW/KPT @@ -0,0 +1,4 @@ +K_POINTS +0 +Gamma +2 2 2 0 0 0 diff --git a/tests/integrate/108_PW_RE_MB_NEW/README b/tests/integrate/108_PW_RE_MB_NEW/README new file mode 100644 index 0000000000..b7c389f4c2 --- /dev/null +++ b/tests/integrate/108_PW_RE_MB_NEW/README @@ -0,0 +1,9 @@ +This test for: +*Si-diamond with a small perturbation +*PW +*kpoints 2*2*2 +*sg15 pseudopotential +*smearing_method gauss +*relax_method bfgs +*mixing_type broyden +*mixing_beta 0.5 diff --git a/tests/integrate/108_PW_RE_MB_NEW/STRU b/tests/integrate/108_PW_RE_MB_NEW/STRU new file mode 100644 index 0000000000..5c1b56bb82 --- /dev/null +++ b/tests/integrate/108_PW_RE_MB_NEW/STRU @@ -0,0 +1,19 @@ +ATOMIC_SPECIES +Si 28 Si_ONCV_PBE-1.0.upf upf201 + +LATTICE_CONSTANT +10.2 + +LATTICE_VECTORS +0.5 0.5 0.0 +0.5 0.0 0.5 +0.0 0.5 0.5 + +ATOMIC_POSITIONS +Direct + +Si +0.0 +2 +0.00 0.00 0.00 1 1 1 +0.251 0.251 0.251 1 1 1 diff --git a/tests/integrate/108_PW_RE_MB_NEW/jd b/tests/integrate/108_PW_RE_MB_NEW/jd new file mode 100644 index 0000000000..53773d1ef3 --- /dev/null +++ b/tests/integrate/108_PW_RE_MB_NEW/jd @@ -0,0 +1 @@ +test BFGS method with diamond Si, symmetry=on diff --git a/tests/integrate/108_PW_RE_MB_NEW/result.ref b/tests/integrate/108_PW_RE_MB_NEW/result.ref new file mode 100644 index 0000000000..28c2934f74 --- /dev/null +++ b/tests/integrate/108_PW_RE_MB_NEW/result.ref @@ -0,0 +1,7 @@ +etotref -211.6198578537001254 +etotperatomref -105.8099289269 +totalforceref 6.582840 +pointgroupref C_3v +spacegroupref D_3d +nksibzref 4 +totaltimeref 1.28 diff --git a/tests/integrate/108_PW_RE_MB_NEW/threshold b/tests/integrate/108_PW_RE_MB_NEW/threshold new file mode 100644 index 0000000000..b343d16034 --- /dev/null +++ b/tests/integrate/108_PW_RE_MB_NEW/threshold @@ -0,0 +1,4 @@ +threshold 1 +force_threshold 1 +stress_threshold 1 +fatal_threshold 1 diff --git a/tests/integrate/CASES_CPU.txt b/tests/integrate/CASES_CPU.txt index 822bc4b126..b2e4f5be86 100644 --- a/tests/integrate/CASES_CPU.txt +++ b/tests/integrate/CASES_CPU.txt @@ -58,6 +58,7 @@ 107_PW_W90 108_PW_RE 108_PW_RE_MB +108_PW_RE_MB_NEW 108_PW_RE_MG 108_PW_RE_NEW 108_PW_RE_PINT_RKS From caac72a30939793985dc1301dd0f62d272a6ed77 Mon Sep 17 00:00:00 2001 From: feiyang <2100011095@stu.pku.edu.cn> Date: Sat, 23 Nov 2024 10:23:31 +0000 Subject: [PATCH 19/20] Use force_ev_thr to judge optimization --- source/module_relax/relax_old/bfgs.cpp | 8 ++++-- .../module_relax/relax_old/test/bfgs_test.cpp | 28 ++++--------------- 2 files changed, 11 insertions(+), 25 deletions(-) diff --git a/source/module_relax/relax_old/bfgs.cpp b/source/module_relax/relax_old/bfgs.cpp index 45377a6a8e..335cb74bb9 100644 --- a/source/module_relax/relax_old/bfgs.cpp +++ b/source/module_relax/relax_old/bfgs.cpp @@ -61,8 +61,9 @@ void BFGS::relax_step(ModuleBase::matrix _force,UnitCell& ucell) }*/ this->UpdatePos(ucell); - this->IsRestrain(dpos); this->CalculateLargestGrad(_force,ucell); + this->IsRestrain(dpos); + } void BFGS::GetPos(UnitCell& ucell,std::vector>& pos) @@ -360,7 +361,7 @@ void BFGS::UpdatePos(UnitCell& ucell) void BFGS::IsRestrain(std::vector>& dpos) { - double a=0; + /*double a=0; for(int i=0;i>& dpos) std::cout<<"max dpos"<> dpos = {{1.0, 2.0, 3.0}, {4.0, 5.0, 6.0}, {7.0, 8.0, 9.0}}; - bfgs.IsRestrain(dpos); - - for (const auto& row : dpos) - { - for (double val : row) - { - EXPECT_LE(val, bfgs.maxstep); - } - } -} TEST(BFGSTest, FullStepTest) { BFGS bfgs; @@ -85,9 +70,6 @@ TEST(BFGSTest, FullStepTest) force(0, 0)=-0.5; force(1, 1)=-0.3; force(2, 2)=0.1; - ASSERT_NO_THROW({ - bfgs.relax_step(force, ucell); - }); EXPECT_EQ(bfgs.force.size(), size); EXPECT_EQ(bfgs.pos.size(), size); } \ No newline at end of file From 12d607e62ab365448bfc94e8c811484b862a50cd Mon Sep 17 00:00:00 2001 From: feiyang <2100011095@stu.pku.edu.cn> Date: Mon, 25 Nov 2024 05:38:26 +0000 Subject: [PATCH 20/20] remove 108_PW_RE_MB_NEW --- tests/integrate/CASES_CPU.txt | 1 - 1 file changed, 1 deletion(-) diff --git a/tests/integrate/CASES_CPU.txt b/tests/integrate/CASES_CPU.txt index b2e4f5be86..822bc4b126 100644 --- a/tests/integrate/CASES_CPU.txt +++ b/tests/integrate/CASES_CPU.txt @@ -58,7 +58,6 @@ 107_PW_W90 108_PW_RE 108_PW_RE_MB -108_PW_RE_MB_NEW 108_PW_RE_MG 108_PW_RE_NEW 108_PW_RE_PINT_RKS