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usethis::use_pipe()
library(tidyverse)
example(source)
roxygen2::roxygenize(load_code = sourceDir)
library(RHClones)
library(tidyverse)
?`:::`
library(RHClones)
library(RHClones)
library(RHClones)
library(RHClones)
library(RHClones)
convertSlidesToPatient()
source("~/WIMM/RHClones/R/fission_funcs.R")
library(RHClones)
library(RHClones)
getOption("mc.cores", 1L)
options(mc.cores = parallel::detectCores())
getOption("mc.cores", 1L)
library(RHClones)
library(RHClones)
fiss_NONO = read_csv("../AnalyseNONO/mcmc_fission_NONO.csv")
fiss_p53 = read_csv("../AnalyseP53/mcmc_fission_p53.csv")
all_hmc_fission = read_csv("../CryptFission/mcmc_fission.csv") # mPAS, MAOA, Stag2
all_hmc_fission = read_csv("../Winton_Lab/Human_clonal_marks_18Aug21/CryptFission/mcmc_fission.csv") # mPAS, MAOA, Stag2
all_hmc_fission = read_csv("~/Winton_Lab/Human_clonal_marks_18Aug21/CryptFission/mcmc_fission.csv") # mPAS, MAOA, Stag2
fiss_NONO = read_csv("~/WIMM/Winton_Lab/Human_clonal_marks_18Aug21/AnalyseNONO/mcmc_fission_NONO.csv")
fiss_p53 = read_csv("~/WIMM/Winton_Lab/Human_clonal_marks_18Aug21/AnalyseP53/mcmc_fission_p53.csv")
all_hmc_fission = read_csv("~/WIMM/Winton_Lab/Human_clonal_marks_18Aug21/CryptFission/mcmc_fission.csv") # mPAS, MAOA, Stag2
all_hmc_fission
for_plot_fiss = all_hmc_fission %>%
bind_rows(all_hmc_fission,
# tbl_fission %>% select(-pop_nu) %>% mutate(clonal_mark=mut_name),
fiss_NONO %>% select(-pop_nu) %>% mutate(clonal_mark="NONO"),
fiss_p53 %>% select(-pop_nu) %>% mutate(clonal_mark="p53"))
for_plot_fiss
all_hmc_mPAS_MAOA = read_csv("../MAOA_rebuttal/mcmc_maoa_split_by_mPAS.csv") %>%
filter(type_split == "Non-split") %>% select(-type_split)
all_hmc_mPAS_MAOA = read_csv("~/WIMM/Winton_Lab/Human_clonal_marks_18Aug21/MAOA_rebuttal/mcmc_maoa_split_by_mPAS.csv") %>%
filter(type_split == "Non-split") %>% select(-type_split)
all_hmc_mPAS_MAOA
fiss_NONO = read_csv("~/WIMM/Winton_Lab/Human_clonal_marks_18Aug21/AnalyseNONO/mcmc_fission_NONO.csv")
fiss_p53 = read_csv("~/WIMM/Winton_Lab/Human_clonal_marks_18Aug21/AnalyseP53/mcmc_fission_p53.csv")
all_hmc_fission = read_csv("~/WIMM/Winton_Lab/Human_clonal_marks_18Aug21/CryptFission/mcmc_fission.csv") # mPAS, MAOA, Stag2
fission_marks = all_hmc_fission %>%
bind_rows(all_hmc_fission,
# tbl_fission %>% select(-pop_nu) %>% mutate(clonal_mark=mut_name),
fiss_NONO %>% select(-pop_nu) %>% mutate(clonal_mark="NONO"),
fiss_p53 %>% select(-pop_nu) %>% mutate(clonal_mark="p53"))
usethis::use_data(fission_marks, compress = "xz")
regr_maoa_mpas = read_csv("~/WIMM/Winton_Lab/Human_clonal_marks_18Aug21/MAOA_rebuttal/mcmc_maoa_split_by_mPAS.csv") %>%
filter(type_split == "Non-split") %>% select(-type_split)
usethis::use_data(regr_maoa_mpas, compress = "xz")
fission_marks
regr_maoa_mpas
library(RHClones)
library(RHClones)
library(RHClones)