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Added conda installation #880

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Update README.md
dadrasarmin Feb 14, 2024
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dadrasarmin Feb 15, 2024
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10 changes: 10 additions & 0 deletions README.md
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Expand Up @@ -120,6 +120,16 @@ If you want to move the orthofinder executable to another location then you must

OrthoFinder is written in python, but the bundled version does not require python to be installed on your computer. Both versions contain the programs OrthoFinder needs in order to run (in bin/), it will use these copies in preference to any of the same programs in your system path. You can delete the individual executables if you would prefer it not to do this.

#### Installing using conda

You can follow these commands to install Orthofinder using conda:
```
conda create -n orthofinder -c conda-forge -c bioconda python scipy numpy diamond mafft fasttree mcl fastme
git clone https://github.com/davidemms/OrthoFinder.git
cd Orthofinder
python3 orthofinder.py -f ExampleData/
```

### Installing OrthoFinder on Mac & Windows

The easiest way to install OrthoFinder on Mac is using Bioconda:
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