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0.3.0

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@hadim hadim released this 07 Apr 12:20

Added:

  • dm.copy_mol
  • dm.set_mol_props
  • dm.copy_mol_props
  • dm.conformers.get_coords
  • dm.conformers.center_of_mass
  • dm.conformers.translate
  • dm.enumerate_stereoisomers
  • dm.enumerate_tautomers
  • dm.atom_indices_to_mol

Changed:

  • rdkit fp to numpy array conversion is purely numpy-based now (x4 faster).
  • Cleaning of various docstrings (removing explicit types).
  • Clean various types.
  • Allow dm.to_image instead of dm.viz.to_image
  • Add atom indices drawing option to dm.to_image
  • Allow to smiles to fail (default is to not fail but return None as before).
  • Add CXSmiles bool flag to to_smiles.
  • Rename utils.paths to utils.fs
  • Integrate pandatools into dm.to_df.
  • Build a mol column from smiles in read_csv and read_excel
  • Rename dm.sanitize_best to dm.sanitize_first

Fixed:

  • Scaffold tests for new rdkit version
  • Conformer cluster tests for new rdkit version

Authors:

  • Hadrien Mary
  • Therence1
  • michelml
  • mike