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There’s NO JAVA in docker image #243

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victorwang123 opened this issue May 17, 2023 · 0 comments
Open

There’s NO JAVA in docker image #243

victorwang123 opened this issue May 17, 2023 · 0 comments

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@victorwang123
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Hi, when I Run PEPATAC in a container. The code follows:
docker pull databio/pepatac
But everytime I run the script, it shows : The following required tool(s) are not callable: java python samtools bedtools bowtie2 fastqc macs2 preseq samblaster skewer perl wigToBigWig bigWigCat bedToBigBed Rscript.
And I enter the docker image, I found there's no java. Can you fix this bug? Thanks very much

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