diff --git a/docs/detailed-install.md b/docs/detailed-install.md index e89f820..664a96f 100644 --- a/docs/detailed-install.md +++ b/docs/detailed-install.md @@ -256,3 +256,15 @@ Optional assets include: - a region blacklist: e.g. [the ENCODE blacklist](https://github.com/Boyle-Lab/Blacklist) - a [genomic feature annotation file](annotation.md) +### 5: Confirm installation + +After setting up your environment to run `PEPATAC`, you can confirm which means of running the pipeline are now executable using the included `checkinstall` script. This can either be run directly from the `pepatac/` repository: + +```console +./checkinstall +``` + +or from the web: +```console +curl -sSL https://raw.githubusercontent.com/databio/pepatac/checkinstall | bash +``` \ No newline at end of file