diff --git a/DESCRIPTION b/DESCRIPTION index 8b0e60c..c66fe72 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,6 +1,6 @@ Package: GenomicDistributions -Version: 1.11.0 -Date: 2023-05-23 +Version: 1.11.1 +Date: 2024-04-26 Title: GenomicDistributions: fast analysis of genomic intervals with Bioconductor Description: If you have a set of genomic ranges, this package can help you with visualization and comparison. It produces several kinds of plots, for example: diff --git a/NAMESPACE b/NAMESPACE index 6be9b96..e24cde7 100644 --- a/NAMESPACE +++ b/NAMESPACE @@ -47,7 +47,6 @@ import(dplyr) import(ggplot2) importFrom(Biostrings,alphabetFrequency) importFrom(Biostrings,readDNAStringSet) -importFrom(Biostrings,type) importFrom(GenomicRanges,GRanges) importFrom(GenomicRanges,GRangesList) importFrom(GenomicRanges,elementMetadata) diff --git a/R/package.R b/R/package.R index ca5c22a..8f7b2be 100644 --- a/R/package.R +++ b/R/package.R @@ -22,7 +22,7 @@ #' tstrsplit as.data.table foverlaps #' @importFrom reshape2 melt #' @importFrom IRanges IRanges Views -#' @importFrom Biostrings alphabetFrequency type +#' @importFrom Biostrings alphabetFrequency #' @importFrom methods is #' @importFrom stats chisq.test #' @importFrom utils installed.packages getAnywhere data globalVariables download.file @@ -66,7 +66,7 @@ if(getRversion() >= "2.15.1") { "i.start", "minEnd", "i.end", "overlap", "gene_biotype", "dinucleotide", "frequency", "L1", "V4", "colName", "i", "j", ".x", "lowerColorColumn", "midpoint", "ubinID", "x.binID", "x.start", "x.end", "FreqPercent", - "Chi.square.pval", "score")) + "Chi.square.pval", "score", "type")) }