diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml index 30977e4..ec24eff 100644 --- a/.github/workflows/main.yml +++ b/.github/workflows/main.yml @@ -30,7 +30,7 @@ jobs: conda config --system --set channel_priority strict mamba create -y -n gffutils-env \ python=${{ matrix.python-version }} \ - --file requirements.txt + bedtools conda activate gffutils-env python setup.py clean sdist @@ -43,9 +43,9 @@ jobs: run: | source "${HOME}/conda/etc/profile.d/conda.sh" source "${HOME}/conda/etc/profile.d/mamba.sh" - mamba install -y -n gffutils-env --file optional-requirements.txt pytest hypothesis conda activate gffutils-env + pip install pytest hypothesis biopython pytest -v --doctest-modules gffutils conda deactivate