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dacarlin/README.md

Hi 👋 I'm Alex and I work at the intersection of biology and AI

  • PhD work advancing ML for protein design in 2017 📖
  • 6 years at Ginkgo Bioworks 🌱 where I designed millions of proteins with AI 🤖
  • I've designed more synthetic DNA than anyone on Earth 🧬
  • I'm interested in protein therapeutic design with generative ML ☕️

In 2024, I'm looking for opportunities contributing to a team working on ML for biology. Please feel free to send me an email! 📫

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  1. protein-transformers-from-scratch protein-transformers-from-scratch Public

    Video lecture series on building generative ML models for protein sequences from scratch

    Jupyter Notebook 3

  2. protein-sedd protein-sedd Public

    Forked from louaaron/Score-Entropy-Discrete-Diffusion

    Based on: Lou+ [ICML 2024 Best Paper] Discrete Diffusion Modeling by Estimating the Ratios of the Data Distribution (https://arxiv.org/abs/2310.16834)

    Python 2

  3. gato gato Public

    Protein design using graph attention networks (GATs)

    Python 6

  4. protein-transformers protein-transformers Public

    Use generative ML to design new proteins using this simple, hackable implementation of protein transformer models

    Python 6

  5. cribbage cribbage Public

    AI-powered cribbage for your command line

    Python 1 2

  6. heme heme Public

    Fast and friendly tools for protein design

    Rust 4 1