From 847a064d035fcc3ed306166c0b3a39e3bb449d4d Mon Sep 17 00:00:00 2001 From: Miguel Brown Date: Fri, 23 Aug 2024 14:56:45 -0400 Subject: [PATCH] :hammer: add droplet utils --- hbc_scrna_qc/scrnaseq/Dockerfile | 1 + 1 file changed, 1 insertion(+) diff --git a/hbc_scrna_qc/scrnaseq/Dockerfile b/hbc_scrna_qc/scrnaseq/Dockerfile index b87a6e5..49414cc 100644 --- a/hbc_scrna_qc/scrnaseq/Dockerfile +++ b/hbc_scrna_qc/scrnaseq/Dockerfile @@ -13,4 +13,5 @@ RUN apt update -y && apt install -y libbz2-dev libglpk40 libhdf5-dev patch RUN mkdir ~/.R && echo MAKEFLAGS = -j8 > ~/.R/Makevars && R -e "BiocManager::install(c('AnnotationHub', 'ensembldb', 'multtest', 'glmGamPoi'))" RUN R -e "install.packages(c('optparse', 'cowplot', 'fitdistrplus', 'future', 'future.apply', 'ggrepel', 'ggridges', 'ica', 'igraph', 'irlba', 'leiden', 'lmtest', 'matrixStats', 'patchwork', 'pbapply', 'plotly', 'png', 'progressr', 'RANN', 'RcppAnnoy', 'reticulate', 'ROCR', 'Rtsne', 'scattermore', 'sctransform', 'spatstat.explore', 'spatstat.geom', 'uwot', 'RcppEigen', 'RcppProgress', 'sp', 'metap', 'hdf5r', 'patch'), type='source', Ncpus=8)" RUN R -e "install.packages(c('${SEURATOBJECT_URL}','${SEURAT_URL}'), repos=NULL, type='source', Ncpus=8)" +RUN R -e "BiocManager::install('DropletUtils')" COPY Dockerfile . \ No newline at end of file