NAMESPACE

# Generated by roxygen2: do not edit by hand

export(PromoterAnnotation)
export(calculateJunctionReadCounts)
export(calculatePromoterReadCounts)
export(getAbsolutePromoterActivity)
export(getGeneExpression)
export(getRelativePromoterActivity)
export(getUnannotatedReducedExonRanges)
export(normalizePromoterReadCounts)
export(prepareAnnotatedIntronRanges)
export(prepareAnnotatedReducedExonRanges)
export(preparePromoterAnnotationData)
export(preparePromoterCoordinates)
export(preparePromoterIdMapping)
exportClasses(PromoterAnnotation)
exportMethods("annotatedIntronRanges<-")
exportMethods("promoterCoordinates<-")
exportMethods("promoterIdMapping<-")
exportMethods("reducedExonRanges<-")
exportMethods(annotatedIntronRanges)
exportMethods(promoterCoordinates)
exportMethods(promoterIdMapping)
exportMethods(reducedExonRanges)
import(GenomicAlignments)
import(GenomicFeatures)
import(GenomicRanges)
import(IRanges)
importFrom(GenomeInfoDb,'seqlevelsStyle<-')
importFrom(GenomeInfoDb,keepStandardChromosomes)
importFrom(GenomeInfoDb,seqlevelsStyle)
importFrom(S4Vectors,queryHits)
importFrom(S4Vectors,runValue)
importFrom(S4Vectors,subjectHits)
importFrom(dplyr,'%>%')
importFrom(dplyr,distinct)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,inner_join)
importFrom(dplyr,mutate)
importFrom(dplyr,n)
importFrom(dplyr,tbl_df)
importFrom(methods,as)
importFrom(methods,new)
importFrom(methods,validObject)
importFrom(rlang,.data)