run_tests_matlab.yml

---
name: tests and coverage with matlab

concurrency:
  group: ${{ github.workflow }}-${{ github.ref }}
  cancel-in-progress: true

on:

  push:
    branches:
    - main

  pull_request:
    branches: ['*']

jobs:

  build:

    strategy:
      matrix:
        os: [ubuntu-latest, windows-latest]
        version: [R2021a, R2023b]
        include:
        - os: macos-latest
          version: R2023b
      fail-fast: false  # Don't cancel all jobs if one fails

    runs-on: ${{ matrix.os }}

    steps:

    - name: Install MATLAB
      uses: matlab-actions/setup-matlab@v2.2.0
      with:
        release: ${{ matrix.version }}

    - name: Clone spm_2_bids
      uses: actions/checkout@v4
      with:
        submodules: true
        fetch-depth: 2

    - name: Install Moxunit and MOcov
      run: |
        git clone https://github.com/MOxUnit/MOxUnit.git --depth 1
        git clone https://github.com/MOcov/MOcov.git --depth 1

    - name: get bids-matlab and JSONio
      run: make install_dev

    - name: Run commands
      uses: matlab-actions/run-command@v2.1.1
      with:
        command: cd(fullfile(getenv('GITHUB_WORKSPACE'), '.github', 'workflows')); run tests_matlab;

    - name: Code coverage
      uses: codecov/codecov-action@v4
      with:
        file: coverage.xml
        flags: ${{ matrix.os }}_matlab-${{ matrix.version }}
        name: codecov-umbrella
        fail_ci_if_error: false
        token: ${{ secrets.CODECOV_TOKEN }}