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Add option to choose AMG as automatic segmentation in annotator #792

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anwai98 opened this issue Nov 21, 2024 · 1 comment · May be fixed by #793
Open

Add option to choose AMG as automatic segmentation in annotator #792

anwai98 opened this issue Nov 21, 2024 · 1 comment · May be fixed by #793
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discussion Do we want to add this feature adnd how?

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@anwai98
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anwai98 commented Nov 21, 2024

Our micro-sam annotator prioritizes AIS as the preferred automatic segmentation mode for models finetuned with additional IS decoder. There could be use-cases, where one might prefer AMG over AIS for automatic segmentation. Can we explore the possibility of enabling users to choose their automatic segmentation mode of choice via the annotators?

PS. I am having a discussion on these lines on image.sc: https://forum.image.sc/t/applying-fine-tuned-model-with-cli/105317/2

cc: @constantinpape

@anwai98 anwai98 added the discussion Do we want to add this feature adnd how? label Nov 21, 2024
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anwai98 commented Nov 21, 2024

I had a closer look at the scripts, and looks like it's the same effect as switching off Prefer Segmentation Decoder in the Embedding Settings. I'll test it around a bit, and if it's a direct translation to my suggestion above, I'll close this issue then.

@anwai98 anwai98 linked a pull request Nov 21, 2024 that will close this issue
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