We read every piece of feedback, and take your input very seriously.
To see all available qualifiers, see our documentation.
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
when trying to click "next image" while on the last image nothing happens besides following error pops up:
--------------------------------------------------------------------------- IndexError Traceback (most recent call last) File ~/miniforge3/envs/samtest/lib/python3.11/site-packages/psygnal/_signal.py:1196, in SignalInstance._run_emit_loop(self=<SignalInstance 'changed' on PushButton(value=False, annotation=None, name='call_button')>, args=(False,)) 1195 with Signal._emitting(self): -> 1196 self._run_emit_loop_inner() self = <SignalInstance 'changed' on PushButton(value=False, annotation=None, name='call_button')> self._run_emit_loop_inner = <bound method SignalInstance._run_emit_loop_immediate of <SignalInstance 'changed' on PushButton(value=False, annotation=None, name='call_button')>> 1197 except RecursionError as e: File ~/miniforge3/envs/samtest/lib/python3.11/site-packages/psygnal/_signal.py:1225, in SignalInstance._run_emit_loop_immediate(self=<SignalInstance 'changed' on PushButton(value=False, annotation=None, name='call_button')>) 1224 for caller in self._slots: -> 1225 caller.cb(args) args = (False,) caller = <StrongFunction on magicgui.widgets._function_gui.FunctionGui.__init__.<locals>._disable_button_and_call> File ~/miniforge3/envs/samtest/lib/python3.11/site-packages/psygnal/_weak_callback.py:357, in StrongFunction.cb(self=<StrongFunction on magicgui.widgets._function_gu...onGui.__init__.<locals>._disable_button_and_call>, args=()) 356 args = args[: self._max_args] --> 357 self._f(*self._args, *args, **self._kwargs) args = () self._f = <function FunctionGui.__init__.<locals>._disable_button_and_call at 0x721eb63da980> self = <StrongFunction on magicgui.widgets._function_gui.FunctionGui.__init__.<locals>._disable_button_and_call> self._args = () self._kwargs = {} File ~/miniforge3/envs/samtest/lib/python3.11/site-packages/magicgui/widgets/_function_gui.py:228, in FunctionGui.__init__.<locals>._disable_button_and_call() 227 try: --> 228 self.__call__() self = <FunctionGui next_image(*args)> 229 finally: File ~/miniforge3/envs/samtest/lib/python3.11/site-packages/magicgui/widgets/_function_gui.py:346, in FunctionGui.__call__(self=<FunctionGui next_image(*args)>, *args=(), **kwargs={}) 345 with _function_name_pointing_to_widget(self): --> 346 value = self._function(*bound.args, **bound.kwargs) self = <FunctionGui next_image(*args)> bound = <BoundArguments (args=())> self._function = <function image_series_annotator.<locals>.next_image at 0x721ec7f05440> 348 self._call_count += 1 File ~/Documents/git-repositories/micro-sam/micro_sam/sam_annotator/image_series_annotator.py:233, in image_series_annotator.<locals>.next_image(*args=()) 232 # Save the current segmentation. --> 233 _save_segmentation(images[next_image_id], next_image_id, segmentation) segmentation = array([[0, 0, ..., 0, 0], [0, 0, ..., 0, 0], ..., [0, 0, ..., 0, 0], [0, 0, ..., 0, 0]], dtype=uint32) next_image_id = 15 images = ['data/cells/images/001_img.png', 'data/cells/images/008_img.png', 'data/cells/images/009_img.png', 'data/cells/images/011_img.png', 'data/cells/images/018_img.png', 'data/cells/images/019_img.png', 'data/cells/images/028_img.png', 'data/cells/images/034_img.png', 'data/cells/images/040_img.png', 'data/cells/images/042_img.png', 'data/cells/images/043_img.png', 'data/cells/images/045_img.png', 'data/cells/images/046_img.png', 'data/cells/images/048_img.png', 'data/cells/images/050_img.png'] 235 # Clear the segmentation already to avoid lagging removal. IndexError: list index out of range The above exception was the direct cause of the following exception: EmitLoopError Traceback (most recent call last) File ~/miniforge3/envs/samtest/lib/python3.11/site-packages/magicgui/widgets/bases/_value_widget.py:71, in ValueWidget._on_value_change(self=PushButton(value=False, annotation=None, name='call_button'), value=False) 69 if value is self.null_value and not self._nullable: 70 return ---> 71 self.changed.emit(value) value = False self.changed = <SignalInstance 'changed' on PushButton(value=False, annotation=None, name='call_button')> self = PushButton(value=False, annotation=None, name='call_button') File ~/miniforge3/envs/samtest/lib/python3.11/site-packages/psygnal/_signal.py:1176, in SignalInstance.emit(self=<SignalInstance 'changed' on PushButton(value=False, annotation=None, name='call_button')>, check_nargs=False, check_types=False, *args=(False,)) 1172 from ._group import EmissionInfo 1174 SignalInstance._debug_hook(EmissionInfo(self, args)) -> 1176 self._run_emit_loop(args) self = <SignalInstance 'changed' on PushButton(value=False, annotation=None, name='call_button')> args = (False,) File ~/miniforge3/envs/samtest/lib/python3.11/site-packages/psygnal/_signal.py:1213, in SignalInstance._run_emit_loop(self=<SignalInstance 'changed' on PushButton(value=False, annotation=None, name='call_button')>, args=(False,)) 1205 loop_err = EmitLoopError( 1206 exc=cb_err, 1207 signal=self, (...) 1210 emit_queue=self._emit_queue, 1211 ).with_traceback(cb_err.__traceback__) 1212 # this comment will show up in the traceback -> 1213 raise loop_err from cb_err # emit() call ABOVE || callback error BELOW loop_err = EmitLoopError("\n\nWhile emitting signal 'magicgui.widgets.PushButton.changed', a IndexError occurred in a callback:\n\n Signal emitted at: /home/freckmann15/miniforge3/envs/samtest/lib/python3.11/site-packages/magicgui/widgets/bases/_value_widget.py:71, in _on_value_change\n > self.changed.emit(value)\n\n Callback error at: /home/freckmann15/Documents/git-repositories/micro-sam/micro_sam/sam_annotator/image_series_annotator.py:233, in next_image\n > _save_segmentation(images[next_image_id], next_image_id, segmentation)\n\n Local variables:\n args = ()\n segmentation = array([[0, 0, 0, ..., 0, 0, 0],\n [0, 0, 0, ..., 0, 0, ...\n abort = False\n _get_save_path = <function image_series_annotator.<locals>._get_save_path at ...\n _save_segmentation = <function image_series_annotator.<locals>._save_segmentation...\n annotator = <micro_sam.sam_annotator.annotator_2d.Annotator2d object at ...\n decoder = DecoderAdapter(\n (base): ConvBlock2d(\n (block): Sequenti...\n device = None\n embedding_paths = ['embeddings/cells/vit_b_lm/001_img.zarr', 'embeddings/cells...\n end_msg = 'You have annotated the last image. Do you wish to close nap...\n halo = None\n have_inputs_as_arrays = False\n images = ['data/cells/images/001_img.png', 'data/cells/images/008_img...\n is_volumetric = False\n model_type = 'vit_b_lm'\n next_image_id = 15\n precompute_amg_state = False\n predictor = <mobile_sam.predictor.SamPredictor object at 0x721ef0bb8190>\n skip_segmented = True\n state = AnnotatorState(image_embeddings={'features': array([[[[-0.01...\n tile_shape = None\n viewer = Viewer(camera=Camera(center=(0.0, 215.8179510554866, 260.959...\n\nSee IndexError above for original traceback.") 1214 finally: 1215 self._recursion_depth -= 1 File ~/miniforge3/envs/samtest/lib/python3.11/site-packages/psygnal/_signal.py:1196, in SignalInstance._run_emit_loop(self=<SignalInstance 'changed' on PushButton(value=False, annotation=None, name='call_button')>, args=(False,)) 1192 self._max_recursion_depth = max( 1193 self._max_recursion_depth, self._recursion_depth 1194 ) 1195 with Signal._emitting(self): -> 1196 self._run_emit_loop_inner() self = <SignalInstance 'changed' on PushButton(value=False, annotation=None, name='call_button')> self._run_emit_loop_inner = <bound method SignalInstance._run_emit_loop_immediate of <SignalInstance 'changed' on PushButton(value=False, annotation=None, name='call_button')>> 1197 except RecursionError as e: 1198 raise RecursionError( 1199 f"RecursionError when " 1200 f"emitting signal {self.name!r} with args {args}" 1201 ) from e File ~/miniforge3/envs/samtest/lib/python3.11/site-packages/psygnal/_signal.py:1225, in SignalInstance._run_emit_loop_immediate(self=<SignalInstance 'changed' on PushButton(value=False, annotation=None, name='call_button')>) 1223 args = self._emit_queue.popleft() 1224 for caller in self._slots: -> 1225 caller.cb(args) args = (False,) caller = <StrongFunction on magicgui.widgets._function_gui.FunctionGui.__init__.<locals>._disable_button_and_call> File ~/miniforge3/envs/samtest/lib/python3.11/site-packages/psygnal/_weak_callback.py:357, in StrongFunction.cb(self=<StrongFunction on magicgui.widgets._function_gu...onGui.__init__.<locals>._disable_button_and_call>, args=()) 355 if self._max_args is not None: 356 args = args[: self._max_args] --> 357 self._f(*self._args, *args, **self._kwargs) args = () self._f = <function FunctionGui.__init__.<locals>._disable_button_and_call at 0x721eb63da980> self = <StrongFunction on magicgui.widgets._function_gui.FunctionGui.__init__.<locals>._disable_button_and_call> self._args = () self._kwargs = {} File ~/miniforge3/envs/samtest/lib/python3.11/site-packages/magicgui/widgets/_function_gui.py:228, in FunctionGui.__init__.<locals>._disable_button_and_call() 226 self._call_button.enabled = False 227 try: --> 228 self.__call__() self = <FunctionGui next_image(*args)> 229 finally: 230 self._call_button.enabled = True File ~/miniforge3/envs/samtest/lib/python3.11/site-packages/magicgui/widgets/_function_gui.py:346, in FunctionGui.__call__(self=<FunctionGui next_image(*args)>, *args=(), **kwargs={}) 344 self._tqdm_depth = 0 # reset the tqdm stack count 345 with _function_name_pointing_to_widget(self): --> 346 value = self._function(*bound.args, **bound.kwargs) self = <FunctionGui next_image(*args)> bound = <BoundArguments (args=())> self._function = <function image_series_annotator.<locals>.next_image at 0x721ec7f05440> 348 self._call_count += 1 349 if self._result_widget is not None: File ~/Documents/git-repositories/micro-sam/micro_sam/sam_annotator/image_series_annotator.py:233, in image_series_annotator.<locals>.next_image(*args=()) 230 return 232 # Save the current segmentation. --> 233 _save_segmentation(images[next_image_id], next_image_id, segmentation) segmentation = array([[0, 0, ..., 0, 0], [0, 0, ..., 0, 0], ..., [0, 0, ..., 0, 0], [0, 0, ..., 0, 0]], dtype=uint32) next_image_id = 15 images = ['data/cells/images/001_img.png', 'data/cells/images/008_img.png', 'data/cells/images/009_img.png', 'data/cells/images/011_img.png', 'data/cells/images/018_img.png', 'data/cells/images/019_img.png', 'data/cells/images/028_img.png', 'data/cells/images/034_img.png', 'data/cells/images/040_img.png', 'data/cells/images/042_img.png', 'data/cells/images/043_img.png', 'data/cells/images/045_img.png', 'data/cells/images/046_img.png', 'data/cells/images/048_img.png', 'data/cells/images/050_img.png'] 235 # Clear the segmentation already to avoid lagging removal. 236 viewer.layers["committed_objects"].data = np.zeros_like(viewer.layers["committed_objects"].data) EmitLoopError: While emitting signal 'magicgui.widgets.PushButton.changed', a IndexError occurred in a callback: Signal emitted at: /home/freckmann15/miniforge3/envs/samtest/lib/python3.11/site-packages/magicgui/widgets/bases/_value_widget.py:71, in _on_value_change > self.changed.emit(value) Callback error at: /home/freckmann15/Documents/git-repositories/micro-sam/micro_sam/sam_annotator/image_series_annotator.py:233, in next_image > _save_segmentation(images[next_image_id], next_image_id, segmentation) Local variables: args = () segmentation = array([[0, 0, 0, ..., 0, 0, 0], [0, 0, 0, ..., 0, 0, ... abort = False _get_save_path = <function image_series_annotator.<locals>._get_save_path at ... _save_segmentation = <function image_series_annotator.<locals>._save_segmentation... annotator = <micro_sam.sam_annotator.annotator_2d.Annotator2d object at ... decoder = DecoderAdapter( (base): ConvBlock2d( (block): Sequenti... device = None embedding_paths = ['embeddings/cells/vit_b_lm/001_img.zarr', 'embeddings/cells... end_msg = 'You have annotated the last image. Do you wish to close nap... halo = None have_inputs_as_arrays = False images = ['data/cells/images/001_img.png', 'data/cells/images/008_img... is_volumetric = False model_type = 'vit_b_lm' next_image_id = 15 precompute_amg_state = False predictor = <mobile_sam.predictor.SamPredictor object at 0x721ef0bb8190> skip_segmented = True state = AnnotatorState(image_embeddings={'features': array([[[[-0.01... tile_shape = None viewer = Viewer(camera=Camera(center=(0.0, 215.8179510554866, 260.959... See IndexError above for original traceback.
The text was updated successfully, but these errors were encountered:
No branches or pull requests
when trying to click "next image" while on the last image nothing happens besides following error pops up:
The text was updated successfully, but these errors were encountered: