From f815707e5b35f083b457c0a92a131e93d28123c5 Mon Sep 17 00:00:00 2001
From: Joselynn Wallace <joselynn_wallace@brown.edu>
Date: Mon, 11 Mar 2024 12:36:16 -0400
Subject: [PATCH] Update Dockerfile

---
 metadata/Dockerfile | 13 +++++++++++++
 1 file changed, 13 insertions(+)

diff --git a/metadata/Dockerfile b/metadata/Dockerfile
index ff0bc61..ebf717c 100644
--- a/metadata/Dockerfile
+++ b/metadata/Dockerfile
@@ -1 +1,14 @@
 FROM ghcr.io/compbiocore/bootcamp_scrna:mar_11_12-29-24_2024
+RUN R -e "BiocManager::install(c('biomaRt'))"
+RUN R -e "BiocManager::install(c('BSgenome.Hsapiens.UCSC.hg19'))"
+RUN R -e "BiocManager::install(c('BSgenome'))"
+RUN R -e "BiocManager::install(c('DESeq2'))"
+RUN R -e "BiocManager::install(c('DT'))"
+RUN R -e "BiocManager::install(c('enrichplot'))"
+RUN R -e "BiocManager::install(c('ensembldb'))"
+RUN R -e "BiocManager::install(c('GenomeInfoDb'))"
+RUN R -e "BiocManager::install(c('GenomicFeatures'))"
+RUN R -e "BiocManager::install(c('limma'))"
+RUN R -e "BiocManager::install(c('S4Vectors'))"
+RUN R -e "BiocManager::install(c('SingleCellExperiment'))"
+RUN R -e "BiocManager::install(c('SummarizedExperiment'))"