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pyproject.toml
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pyproject.toml
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[build-system]
requires = ["setuptools>=61.2"]
build-backend = "setuptools.build_meta"
[project]
name = "wdl2cwl"
authors = [{name = "Dinithi Wickramaratne", email = "[email protected]"}]
description = "A translator from WDL to CWL v1.2"
keywords = [
"scientific-workflows",
"workflow-engine",
"workflow-management",
"common-workflow-language",
"cwl",
"wdl",
"workflow-description-language",
"transpiler",
]
license = {text = "Apache License"}
classifiers = [
"Environment :: Console",
"Intended Audience :: Developers",
"Intended Audience :: System Administrators",
"Intended Audience :: Science/Research",
"License :: OSI Approved :: GNU General Public License v3 (GPLv3)",
"Operating System :: POSIX :: Linux",
"Programming Language :: Python",
"Programming Language :: Python :: 3.8",
"Programming Language :: Python :: 3.9",
"Programming Language :: Python :: 3.10",
"Programming Language :: Python :: 3.11",
"Programming Language :: Python :: 3.12",
"Programming Language :: Python :: 3 :: Only",
"Programming Language :: Python :: Implementation :: CPython",
]
requires-python = ">=3.8"
dependencies = [
"cwl-utils >= 0.12",
"miniwdl",
"regex",
"ruamel.yaml < 0.17.22"
]
dynamic = ["version"]
[project.readme]
file = "README.md"
content-type = "text/markdown"
[project.urls]
Homepage = "https://github.com/common-workflow-lab/wdl-cwl-translator"
Documentation = "https://github.com/common-workflow-lab/wdl-cwl-translator/"
Source = "https://github.com/common-workflow-lab/wdl-cwl-translator/"
Tracker = "https://github.com/common-workflow-lab/wdl-cwl-translator/issues"
[project.optional-dependencies]
mypy = [
"mypy==1.13.0",
"types-requests",
"types-setuptools",
]
test = [
"cwltest",
"cwltool >= 3.1.20220202110738",
"pytest >= 6.0.2, < 8.4",
"pytest-cov",
"pytest-xdist",
]
all = [
"wdl2cwl[mypy]",
"wdl2cwl[test]",
]
[project.scripts]
wdl2cwl = "wdl2cwl.main:main"
[tool.setuptools]
platforms = ["any"]
license-files = ["LICENSE"]
include-package-data = true
packages = [
"wdl2cwl",
"wdl2cwl.tests",
"wdl2cwl.tests.cwl_files",
"wdl2cwl.tests.inputs",
"wdl2cwl.tests.inputs.deepvariant_testdata",
"wdl2cwl.tests.inputs.bcftools",
"wdl2cwl.tests.wdl_files",
"wdl2cwl.tests.wdl_files.tools",
"wdl2cwl.tests.wdl_files.tasks"
]
[tool.setuptools.dynamic]
version = {attr = "wdl2cwl.__version__"}
[tool.aliases]
test = "pytest"
[tool.isort]
multi_line_output = "3"
include_trailing_comma = "True"
force_grid_wrap = "0"
use_parentheses = "True"
line_length = "88"
[tool.mypy]
show_error_context = true
show_column_numbers = true
show_error_codes = true
pretty = true
strict = true
[[tool.mypy.overrides]]
module = ["ruamel.*"]
ignore_errors = true
[[tool.mypy.overrides]]
module = ["lark.*"]
ignore_missing_imports = true