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Project_setup error #440

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mackenziemitchell opened this issue Apr 29, 2024 · 0 comments
Open

Project_setup error #440

mackenziemitchell opened this issue Apr 29, 2024 · 0 comments

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@mackenziemitchell
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mackenziemitchell commented Apr 29, 2024

Hello,

When running project_setup with the following command, I got an error (pasted below).

clpipe project_setup -project_title ADHDBrainMAP_proc -project_dir ./BMAP_fmriprepv23.2.1_wICA -source_data ./data_DICOMs -symlink_source_data

The error:

FileNotFoundError: [Errno 2] No such file or directory: '/proj/cohenlab/projects/ADHDBrainMAP/BMAP_fmriprepv23.2.1_wICA/.clpipe'

This error was not thrown once I created the project directory before running project_setup. I wonder if this means there is an error with how project_setup creates the directory? The code I ran to resolve the issue:

mkdir BMAP_fmriprepv23.2.1_wICA
clpipe project_setup -project_title ADHDBrainMAP_proc -project_dir ./BMAP_fmriprepv23.2.1_wICA -source_data ./data_DICOMs -symlink_source_data

Thanks,
Mackenzie

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