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Both dcm2bids and heudiconv have a setup function -
dcm2bids is dcm2bids_helper
not currently implemented in clpipe
heudiconv's is essentially running heudiconv with the base template and no NIFTI conversion
this one already exists as bids_conversion.dicom_to_nifti_to_bids_converter_setup()
User should be able to run something like clpipe convert2bids setup --dcm2bids to get the dcm2bids setup, for example
The text was updated successfully, but these errors were encountered:
wasciutto
changed the title
Add 'convert setup' command to setup either dcm2bids or heudiconv
Add 'bids convert setup' command to setup either dcm2bids or heudiconv
Sep 14, 2022
wasciutto
changed the title
Add 'bids convert setup' command to setup either dcm2bids or heudiconv
Add command to setup either dcm2bids or heudiconv
May 11, 2023
Both dcm2bids and heudiconv have a setup function -
dcm2bids is
dcm2bids_helper
heudiconv's is essentially running heudiconv with the base template and no NIFTI conversion
User should be able to run something like
clpipe convert2bids setup --dcm2bids
to get the dcm2bids setup, for exampleThe text was updated successfully, but these errors were encountered: