Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add command to setup either dcm2bids or heudiconv #261

Open
wasciutto opened this issue Sep 14, 2022 · 1 comment
Open

Add command to setup either dcm2bids or heudiconv #261

wasciutto opened this issue Sep 14, 2022 · 1 comment

Comments

@wasciutto
Copy link
Contributor

wasciutto commented Sep 14, 2022

Both dcm2bids and heudiconv have a setup function -

dcm2bids is dcm2bids_helper

  • not currently implemented in clpipe

heudiconv's is essentially running heudiconv with the base template and no NIFTI conversion

  • this one already exists as bids_conversion.dicom_to_nifti_to_bids_converter_setup()

User should be able to run something like clpipe convert2bids setup --dcm2bids to get the dcm2bids setup, for example

@wasciutto wasciutto changed the title Add 'convert setup' command to setup either dcm2bids or heudiconv Add 'bids convert setup' command to setup either dcm2bids or heudiconv Sep 14, 2022
@wasciutto wasciutto added the enhancement New feature or request label Nov 15, 2022
@wasciutto
Copy link
Contributor Author

Under the 1.7.2 this would instead be a command like clpipe dicom setup_convert2bids

@wasciutto wasciutto changed the title Add 'bids convert setup' command to setup either dcm2bids or heudiconv Add command to setup either dcm2bids or heudiconv May 11, 2023
@wasciutto wasciutto removed the enhancement New feature or request label May 11, 2023
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
None yet
Development

No branches or pull requests

1 participant