From 2337e0652d07fd9ba4a5b12af07839b7689a10a1 Mon Sep 17 00:00:00 2001
From: yuvrajjain2003 <yjain@unc.edu>
Date: Sat, 24 Feb 2024 23:55:35 -0500
Subject: [PATCH] Pass in n_threads from config file into preprocessing

---
 clpipe/fmri_preprocess.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/clpipe/fmri_preprocess.py b/clpipe/fmri_preprocess.py
index f254bc75..a52e9cc1 100644
--- a/clpipe/fmri_preprocess.py
+++ b/clpipe/fmri_preprocess.py
@@ -163,7 +163,7 @@ def fmriprep_process(
     threads_arg = ""
     if thread_command_active:
         logger.debug("Threads command: ACTIVE")
-        threads_arg = f"{N_THREADS_FLAG} " + batch_manager.config.n_threads_default
+        threads_arg = f"{N_THREADS_FLAG} " + config.fmriprep.n_threads
 
     fmriprep_args = {
         "bids_dir": config.fmriprep.bids_directory,