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glm_sfa_pl_chk_phase.m
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glm_sfa_pl_chk_phase.m
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% Function: glm_sfa_pl_chk_phase
% Purpose: To explore the phase estimates vs. frequency.
% Quality control. This is a companion function
% to glm_sfa_pl() that provides further
% debuging without the computational overhead.
% Input:
%
% v - Data used in call to glm_sfa_pl().
%
% dt - bin size for spikes and the sample period
% for the lfp, in seconds.
%
% out - output structure returned from glm_sfa_pl().
%
% n_secs - duration of time to investigate the unwrapped phase.
% Note that unwrapping occurs across trials.
%
%
% fname - name of file to write debugging and progress messages to.
%
% Output:
%
%
%
function debug_out = glm_sfa_pl_chk_phase( v, dt, out, n_secs, fname )
% Init.
debug_out = 1
n_seconds = n_secs;
debug_level = 2;
lastwarn( '' );
out_nm = sprintf( '%s.phase-check.ps', fname );
fprintf( '\n\n==========================================\n' );
fprintf( 'Preparing to delete %s\n', out_nm );
if ispc
system( sprintf( 'del %s', out_nm ));
else
system( sprintf( 'rm %s', out_nm ));
end
fprintf( '\t %s deleted.\n', out_nm );
fprintf( '==========================================\n\n' );
nTS = length( v );
nFreqs = length( out.f );
Ws = 1.0/dt; % Sampling frequency is 600.615 Hz
Wnyq = Ws/2; % Nyquist frequency is Ws/2
total_len = sum( cell2mat( cellfun( @(x) size( x, 1 ), v, 'uniformoutput', false )));
spikes = zeros( total_len, 1 );
i_last_stop = 0;
max_dft = -1;
min_dft = 1e10;
for n = 1 : nTS
N = size( v{n}, 1 );
i_start = i_last_stop + 1;
i_stop = i_start + N - 1;
i_last_stop = i_stop;
inds = i_start:i_stop;
spikes(inds) = v{n}(:,1);
dft_lfp = fft( v{n}(:,2) - mean( v{n}(:,2)));
max_dft = max( max_dft, max( abs( dft_lfp )));
min_dft = min( min_dft, min( abs( dft_lfp )));
end % for nTS
range_lfp_dft = max_dft - min_dft;
fprintf( '\n\nRange LFP Mag. DFT: %.1f\n\n', range_lfp_dft );
% =========================================
% Phase filter vs frequency. Mag. response.
% =========================================
h_img = cell2mat( out.xfer_func );
figure(1);clf;
imagesc( out.f, out.xfer_func_f/pi*.5/dt, 20*log10( abs( h_img ))); colorbar;
title( [{'Mag. Response (dB) vs. Frequ.'}, ...
{sprintf('Worst-case Reqd. Buffer = %.1f dB', 20*log10( range_lfp_dft ))} ] );
xlabel( 'Frequency (Hz)' );
ylabel( 'Frequency (Hz)' );
set(gca,'ylim',[0 max(out.f)] );
print( out_nm, '-dpsc2', '-append' ); close(1);
% =========================================
% =========================================
phase_mat = cell2mat( out.phases );
big_t = [ 0:size(phase_mat,1) - 1 ]' *dt;
unwrap_p = unwrap( phase_mat );
pred_unwrap_p = big_t * 2 * pi * out.f;
figure(1);clf;
subplot(1,3,1),imagesc( out.f, big_t, unwrap_p );
caxis( [ 0 2*pi*100*big_t(round(n_seconds/dt)) ] );colorbar
set(gca,'ylim',[0 n_seconds] );
title( [{'Estimated LFP Phase vs'},{'LFP Rhythm Frequency'}] );
ylabel( 'Time (in seconds, concatenated across trials )' );
xlabel( 'Frequency (Hz)' );
subplot(1,3,2),imagesc( out.f, big_t, unwrap_p - pred_unwrap_p );
caxis( [ 0 2*pi*100*big_t(round(n_seconds/dt))/10 ] );colorbar;
set(gca,'ylim',[0 n_seconds] );
title( [{'Estimated LFP Phase -'}, {'Predicted LFP Phase'} ] );
xlabel( 'Frequency (Hz)' );
subplot(1,3,3),imagesc( out.f, big_t, diff( unwrap_p - pred_unwrap_p ) / ( 2 * pi * dt ) ),
set(gca,'ylim',[0 n_seconds] );
caxis( [ -20 20 ] ), colorbar;
title( 'Instantaneous Departure Frequency' );
xlabel( 'Frequency (Hz)' );
suptitle_cb_auto( 'BP Filter Phase Estimation Performance' );
print( out_nm, '-dpsc2', '-append' ); close(1);
fprintf ('\n\n==================================\n' );
fprintf ('Done.\n' );
fprintf ('==================================\n\n' );
end