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Merge pull request #250 from coderefinery/swi_reorder
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Moved "sharing" to social coding and reordered according to schedule
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bast authored Sep 13, 2023
2 parents a8defee + b3ff267 commit a4a6867
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4 changes: 1 addition & 3 deletions content/index.rst
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Expand Up @@ -22,7 +22,6 @@ reproducible environments and computational steps** for our future selves.
- if a computational studies contains several steps, be able to document them
- know about use cases for containers
- knowing the pros and cons of manual documentation vs. scripted automation vs. workflow management
- be able to create a DOI for research output like code or data


.. prereq::
Expand All @@ -37,10 +36,9 @@ reproducible environments and computational steps** for our future selves.

motivation.md
organizing-projects.md
dependencies.md
workflow-management.md
dependencies.md
environments.md
sharing.md


.. toctree::
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2 changes: 1 addition & 1 deletion content/organizing-projects.md
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Expand Up @@ -104,7 +104,7 @@ Do you want to practice your reproducibility skills and get inspired by working
- Consider using version control for manuscripts as well. It may help you when keeping track of edits + if you sync it online then you don't have to worry about losing your work.
- Collaboration can be done efficiently by
- real time collaboration tools like HackMD/HedgeDoc where conflicts are resolved on yhe fly
- real time collaboration tools like HackMD/HedgeDoc where conflicts are resolved on the fly
- version control where conflicts are detected and shown – and solved manually
```
````
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199 changes: 0 additions & 199 deletions content/sharing.md

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2 changes: 1 addition & 1 deletion content/workflow-management.md
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Expand Up @@ -239,7 +239,7 @@ We can visualize the directed acyclic graph (DAG) of our current Snakefile
using the `--dag` option, which will output the DAG in `dot` language.

**Note**: This requires the [Graphviz software](https://www.graphviz.org/),
which can be installed by `conda install graphviz`). It's not necessary to
which can be installed by `conda install graphviz`. It's not necessary to
run this step yourself.

```console
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