From 53ca829a0721a1d2e9a74043a0dcc797af548548 Mon Sep 17 00:00:00 2001
From: Pablo Velasco <pablovelasco@flywheel.io>
Date: Thu, 14 Mar 2024 18:57:55 -0400
Subject: [PATCH 1/2] UP manifest.json - Add gear categorization

GEAR-5440
---
 manifest.json | 23 ++++++++++++++++++++---
 1 file changed, 20 insertions(+), 3 deletions(-)

diff --git a/manifest.json b/manifest.json
index 550d963..9d645e3 100644
--- a/manifest.json
+++ b/manifest.json
@@ -4,14 +4,31 @@
   "description": "CNI-DCM-CONVERT uses SciTran's data library (https://github.com/vistalab/scitran-data) to convert raw DICOM data (within a zip archive) to NIfTI, Montage, and PNG (screenshot acquisitions) formats. DCM-CONVERT supports Siemens and GE DICOM data. This gear will also use dcm2niix to generate bids-sidecar metadata. Those metadata will be added to the output NIfTI file's info object in Flywheel.",
   "maintainer": "Michael Perry <lmperry@stanford.edu>",
   "author": "Scientific Transparency (RF Dougherty, K Hahn, R Bowen, G Schaefer, LM Perry, H Wu)",
-  "url": "https://github.com/vistalab/scitran-data",
-  "source": "https://github.com/cni/cni-dcm-convert",
+  "url": "https://github.com/cni/cni-dcm-convert",
+  "source": "https://github.com/vistalab/scitran-data",
   "license": "Apache-2.0",
   "flywheel": "0",
   "version": "2.6.0",
   "custom": {
     "flywheel": {
-      "suite": "Stanford CNI"
+      "suite": "",
+      "classification": {
+        "species": [
+          ""
+        ],
+        "organ": [
+          ""
+        ],
+        "therapeutic_area": [
+          ""
+        ],
+        "modality": [
+          ""
+        ],
+        "function": [
+          ""
+        ]
+      }
     },
     "gear-builder": {
       "category": "converter",

From 5751dc1c982c643f8961f504b045e009c8268512 Mon Sep 17 00:00:00 2001
From: Pablo Velasco <pablovelasco@flywheel.io>
Date: Mon, 1 Jul 2024 13:10:05 -0400
Subject: [PATCH 2/2] Update gear categorization

---
 manifest.json | 36 ++++++++++++++++++++----------------
 1 file changed, 20 insertions(+), 16 deletions(-)

diff --git a/manifest.json b/manifest.json
index 9d645e3..26a1e60 100644
--- a/manifest.json
+++ b/manifest.json
@@ -11,23 +11,27 @@
   "version": "2.6.0",
   "custom": {
     "flywheel": {
-      "suite": "",
+      "suite": "Conversion",
       "classification": {
-        "species": [
-          ""
-        ],
-        "organ": [
-          ""
-        ],
-        "therapeutic_area": [
-          ""
-        ],
-        "modality": [
-          ""
-        ],
-        "function": [
-          ""
-        ]
+          "function": [
+            "Conversion"
+          ],
+          "modality": [
+            "Any"
+          ],
+          "organ": [
+            "Any"
+          ],
+          "species": [
+            "Phantom",
+            "Human",
+            "Animal",
+            "Other"
+          ],
+          "therapeutic_area": [
+            "Any"
+          ]
+        }
       }
     },
     "gear-builder": {